Wall clock time and date at job start Tue Mar 31 2020 21:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37357 * 125.83376 * 2 1 4 4 N 1.29395 * 108.82894 * 179.77579 * 3 2 1 5 5 N 1.40175 * 108.14128 * 0.37851 * 4 3 2 6 6 C 1.46501 * 126.35232 * 179.87797 * 5 4 3 7 7 C 1.52995 * 109.47224 * 269.69454 * 6 5 4 8 8 C 1.50703 * 109.46953 * 179.97438 * 7 6 5 9 9 O 1.21277 * 120.00217 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99784 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99759 * 179.72689 * 10 8 7 12 12 C 1.53003 * 109.47052 * 175.39738 * 11 10 8 13 13 N 1.46496 * 110.01545 * 303.90222 * 12 11 10 14 14 C 1.36937 * 119.99902 * 301.46011 * 13 12 11 15 15 H 1.07999 * 120.00516 * 354.61258 * 14 13 12 16 16 C 1.38820 * 120.00054 * 174.60796 * 14 13 12 17 17 N 1.31615 * 119.99570 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 120.00036 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47422 * 59.99972 * 18 16 14 20 20 H 1.48496 * 109.47072 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47405 * 300.00002 * 18 16 14 22 22 C 1.54269 * 110.02979 * 182.45881 * 12 11 10 23 23 C 1.54893 * 104.19247 * 217.10589 * 22 12 11 24 24 C 1.54882 * 102.74816 * 37.94361 * 23 22 12 25 25 C 1.53871 * 110.02941 * 65.29371 * 12 11 10 26 26 C 1.34815 * 125.82943 * 180.02562 * 2 1 3 27 27 O 1.21812 * 126.30161 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.47305 * 269.97856 * 1 2 3 29 29 H 1.09004 * 109.46960 * 29.97694 * 1 2 3 30 30 H 1.08998 * 109.47643 * 149.97417 * 1 2 3 31 31 H 1.08001 * 125.58432 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.47057 * 149.69142 * 6 5 4 33 33 H 1.09002 * 109.47015 * 29.69362 * 6 5 4 34 34 H 1.09005 * 109.47593 * 59.99854 * 7 6 5 35 35 H 1.09002 * 109.47049 * 299.99887 * 7 6 5 36 36 H 0.96996 * 119.99541 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.46944 * 295.39776 * 11 10 8 38 38 H 1.09003 * 109.47160 * 55.39632 * 11 10 8 39 39 H 0.96999 * 119.99769 * 121.46681 * 13 12 11 40 40 H 0.97001 * 119.99973 * 179.97438 * 17 16 14 41 41 H 1.08996 * 110.48793 * 335.78148 * 22 12 11 42 42 H 1.08995 * 110.48507 * 98.43022 * 22 12 11 43 43 H 1.08998 * 110.75369 * 279.62840 * 23 22 12 44 44 H 1.08994 * 110.75321 * 156.25978 * 23 22 12 45 45 H 1.09007 * 110.48519 * 203.37540 * 24 23 22 46 46 H 1.09001 * 110.48977 * 80.73375 * 24 23 22 47 47 H 1.08998 * 110.03110 * 238.56785 * 25 12 11 48 48 H 1.09004 * 110.03905 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5065 0.7352 0.0048 5 7 3.5344 -0.6663 -0.0007 6 6 4.7313 -1.5111 -0.0005 7 6 5.1478 -1.8057 -1.4429 8 6 6.3794 -2.6742 -1.4426 9 8 6.8749 -3.0235 -0.3922 10 7 6.9297 -3.0636 -2.6098 11 6 8.1304 -3.9029 -2.6095 12 6 8.4795 -4.2941 -4.0469 13 7 7.3361 -4.9582 -4.6777 14 6 6.8155 -6.0975 -4.1245 15 1 7.2998 -6.5553 -3.2746 16 6 5.6651 -6.6642 -4.6560 17 7 5.0751 -6.1065 -5.6920 18 14 4.9545 -8.2179 -3.9010 19 1 4.6054 -7.9631 -2.4803 20 1 3.7344 -8.6175 -4.6471 21 1 5.9593 -9.3089 -3.9758 22 6 9.7066 -5.2290 -4.0569 23 6 10.4996 -4.8013 -5.3168 24 6 10.3255 -3.2623 -5.3242 25 6 8.8730 -3.0436 -4.8526 26 6 2.2542 -1.0930 -0.0005 27 8 1.8804 -2.2524 -0.0006 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.9250 2.1373 0.0004 32 1 4.5150 -2.4475 0.5137 33 1 5.5414 -0.9933 0.5130 34 1 5.3641 -0.8693 -1.9572 35 1 4.3377 -2.3235 -1.9564 36 1 6.5331 -2.7845 -3.4498 37 1 8.9608 -3.3489 -2.1718 38 1 7.9446 -4.8027 -2.0230 39 1 6.9480 -4.5909 -5.4872 40 1 4.2714 -6.5026 -6.0637 41 1 10.3069 -5.0801 -3.1595 42 1 9.3926 -6.2695 -4.1388 43 1 10.0668 -5.2434 -6.2142 44 1 11.5514 -5.0706 -5.2210 45 1 10.4633 -2.8676 -6.3309 46 1 11.0258 -2.7958 -4.6313 47 1 8.2139 -2.9314 -5.7134 48 1 8.8158 -2.1581 -4.2195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753666389.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:59 Heat of formation + Delta-G solvation = 15.047589 kcal Electronic energy + Delta-G solvation = -29702.409211 eV Core-core repulsion = 25601.589262 eV Total energy + Delta-G solvation = -4100.819949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.52327 -39.48842 -38.18402 -37.31586 -35.75529 -34.06635 -33.28151 -32.82293 -30.72043 -29.93044 -28.27137 -27.97815 -27.44107 -25.19399 -23.95793 -23.08400 -22.35389 -21.19659 -20.44847 -19.63563 -18.56771 -17.82684 -17.06125 -16.92007 -16.55453 -16.21743 -15.74645 -15.62209 -15.19758 -15.02889 -14.78251 -14.47165 -14.03492 -13.94717 -13.45026 -13.30448 -13.20859 -13.03636 -12.78311 -12.62884 -12.53702 -12.31547 -12.02451 -11.86180 -11.43423 -11.17995 -11.07870 -10.74041 -10.72828 -10.62538 -10.51697 -10.33181 -10.26531 -10.23238 -10.13648 -9.85414 -9.62789 -9.47280 -8.88705 -8.66920 -8.40886 -6.99629 -5.78934 -3.07819 1.62188 1.77607 2.58862 2.93577 3.07508 3.45996 3.50713 3.53312 3.77512 4.26346 4.50612 4.59640 4.79334 4.87964 4.91346 5.07818 5.11800 5.16185 5.20271 5.23052 5.28392 5.51187 5.57845 5.61261 5.69674 5.76746 5.79452 5.92005 5.94615 5.95575 6.09104 6.11523 6.18373 6.26250 6.31423 6.38886 6.44585 6.56845 6.61904 6.77790 6.83327 7.01395 7.11142 7.47905 7.72567 7.95712 8.06033 8.39784 8.69890 9.51802 10.05196 10.40408 11.43050 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010731 B = 0.003147 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.613699 B = 8896.501767 C =10594.532069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.564 5.564 3 C 0.249 3.751 4 N -0.280 5.280 5 N -0.449 5.449 6 C 0.179 3.821 7 C -0.160 4.160 8 C 0.519 3.481 9 O -0.559 6.559 10 N -0.696 5.696 11 C 0.120 3.880 12 C 0.189 3.811 13 N -0.711 5.711 14 C -0.234 4.234 15 H 0.069 0.931 16 C -0.007 4.007 17 N -0.932 5.932 18 Si 0.900 3.100 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.132 4.132 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.126 4.126 26 C 0.640 3.360 27 O -0.546 6.546 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.229 0.771 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.403 0.597 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 18.306 6.917 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.294 5.294 3 C -0.051 4.051 4 N -0.101 5.101 5 N -0.271 5.271 6 C 0.058 3.942 7 C -0.201 4.201 8 C 0.304 3.696 9 O -0.438 6.438 10 N -0.345 5.345 11 C -0.006 4.006 12 C 0.096 3.904 13 N -0.352 5.352 14 C -0.365 4.365 15 H 0.087 0.913 16 C -0.203 4.203 17 N -0.580 5.580 18 Si 0.731 3.269 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.172 4.172 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.164 4.164 26 C 0.340 3.660 27 O -0.419 6.419 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.246 0.754 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.237 0.763 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.463 17.293 7.741 19.003 hybrid contribution -1.713 -0.829 -0.386 1.942 sum -3.176 16.464 7.355 18.309 Atomic orbital electron populations 1.21809 0.74309 1.04774 1.03420 1.45961 1.08877 1.06749 1.67800 1.25894 0.85934 0.94697 0.98532 1.76971 1.18149 0.92336 1.22655 1.49081 1.06336 1.02908 1.68737 1.21205 0.82953 0.93477 0.96551 1.22006 0.98007 1.01277 0.98800 1.20093 0.84570 0.80759 0.84202 1.90667 1.64001 1.57838 1.31343 1.45697 1.29595 1.51126 1.08116 1.21893 0.85409 0.93995 0.99335 1.20464 0.89069 0.90838 0.90007 1.42536 1.33631 1.29062 1.29976 1.19034 1.05344 1.01063 1.11059 0.91320 1.24669 0.97917 0.99324 0.98404 1.69633 1.21634 1.41433 1.25280 0.86371 0.78430 0.83401 0.78656 1.21193 1.21782 1.21296 1.22826 0.96371 1.01637 0.96369 1.22383 0.98804 0.95046 0.99224 1.22301 0.96500 0.96835 1.00182 1.22433 0.96534 0.97571 0.99852 1.16849 0.82217 0.85143 0.81815 1.91138 1.77574 1.15133 1.58038 0.90979 0.89382 0.89333 0.75443 0.87800 0.87929 0.88528 0.88226 0.76261 0.93112 0.91428 0.78151 0.93550 0.92916 0.90289 0.91420 0.92735 0.92388 0.92285 0.91328 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.56 11.05 59.85 0.66 1.23 16 2 N -0.56 -5.48 3.14 -130.10 -0.41 -5.88 16 3 C 0.25 1.83 12.66 -89.13 -1.13 0.71 16 4 N -0.28 -3.11 12.53 29.87 0.37 -2.74 16 5 N -0.45 -6.21 3.63 -65.12 -0.24 -6.44 16 6 C 0.18 2.57 5.68 -4.04 -0.02 2.55 16 7 C -0.16 -2.34 6.02 -27.88 -0.17 -2.51 16 8 C 0.52 9.20 7.83 -10.98 -0.09 9.12 16 9 O -0.56 -11.45 15.98 5.56 0.09 -11.36 16 10 N -0.70 -12.34 5.10 -60.29 -0.31 -12.65 16 11 C 0.12 2.22 3.99 -4.04 -0.02 2.20 16 12 C 0.19 3.42 0.68 -130.70 -0.09 3.33 16 13 N -0.71 -16.08 4.76 -46.20 -0.22 -16.30 16 14 C -0.23 -6.13 8.39 -15.06 -0.13 -6.26 16 15 H 0.07 1.82 7.23 -52.49 -0.38 1.44 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 17 N -0.93 -27.13 13.06 55.49 0.72 -26.41 16 18 Si 0.90 22.74 29.55 -169.99 -5.02 17.72 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 C -0.13 -2.28 5.94 -25.07 -0.15 -2.43 16 23 C -0.12 -1.76 6.91 -24.74 -0.17 -1.93 16 24 C -0.12 -1.63 6.83 -25.08 -0.17 -1.80 16 25 C -0.13 -1.91 5.80 -25.61 -0.15 -2.06 16 26 C 0.64 9.49 8.60 -86.73 -0.75 8.74 16 27 O -0.55 -10.35 17.71 5.09 0.09 -10.26 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.23 0.34 8.06 -52.49 -0.42 -0.08 16 32 H 0.10 1.66 8.07 -51.93 -0.42 1.24 16 33 H 0.10 1.37 8.10 -51.93 -0.42 0.95 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 36 H 0.40 6.89 7.99 -40.82 -0.33 6.56 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.45 7.49 -51.93 -0.39 1.07 16 39 H 0.38 9.31 7.28 -40.82 -0.30 9.01 16 40 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 42 H 0.08 1.57 7.12 -51.93 -0.37 1.20 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.09 7.44 -51.93 -0.39 0.70 16 48 H 0.06 0.85 7.55 -51.93 -0.39 0.46 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -35.62 396.50 -8.97 -44.59 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -7.57 Total: 13.16 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -2.46 Total: 10.61 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -0.07 Total: -70.43 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.18 Total: -21.62 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.62 -8.97 -44.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753666389.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.634 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds