Wall clock time and date at job start Tue Mar 31 2020 21:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37357 * 125.83376 * 2 1 4 4 N 1.29395 * 108.82894 * 179.77579 * 3 2 1 5 5 N 1.40175 * 108.14128 * 0.37851 * 4 3 2 6 6 C 1.46501 * 126.35232 * 179.87797 * 5 4 3 7 7 C 1.52995 * 109.47224 * 269.69454 * 6 5 4 8 8 C 1.50703 * 109.46953 * 179.97438 * 7 6 5 9 9 O 1.21277 * 120.00217 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99784 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99759 * 179.72689 * 10 8 7 12 12 C 1.53003 * 109.47052 * 175.39738 * 11 10 8 13 13 N 1.46496 * 110.01545 * 303.90222 * 12 11 10 14 14 C 1.36937 * 119.99902 * 301.46011 * 13 12 11 15 15 H 1.07999 * 120.00516 * 354.61258 * 14 13 12 16 16 C 1.38820 * 120.00054 * 174.60796 * 14 13 12 17 17 N 1.31615 * 119.99570 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 120.00036 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47422 * 59.99972 * 18 16 14 20 20 H 1.48496 * 109.47072 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47405 * 300.00002 * 18 16 14 22 22 C 1.54269 * 110.02979 * 182.45881 * 12 11 10 23 23 C 1.54893 * 104.19247 * 217.10589 * 22 12 11 24 24 C 1.54882 * 102.74816 * 37.94361 * 23 22 12 25 25 C 1.53871 * 110.02941 * 65.29371 * 12 11 10 26 26 C 1.34815 * 125.82943 * 180.02562 * 2 1 3 27 27 O 1.21812 * 126.30161 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.47305 * 269.97856 * 1 2 3 29 29 H 1.09004 * 109.46960 * 29.97694 * 1 2 3 30 30 H 1.08998 * 109.47643 * 149.97417 * 1 2 3 31 31 H 1.08001 * 125.58432 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.47057 * 149.69142 * 6 5 4 33 33 H 1.09002 * 109.47015 * 29.69362 * 6 5 4 34 34 H 1.09005 * 109.47593 * 59.99854 * 7 6 5 35 35 H 1.09002 * 109.47049 * 299.99887 * 7 6 5 36 36 H 0.96996 * 119.99541 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.46944 * 295.39776 * 11 10 8 38 38 H 1.09003 * 109.47160 * 55.39632 * 11 10 8 39 39 H 0.96999 * 119.99769 * 121.46681 * 13 12 11 40 40 H 0.97001 * 119.99973 * 179.97438 * 17 16 14 41 41 H 1.08996 * 110.48793 * 335.78148 * 22 12 11 42 42 H 1.08995 * 110.48507 * 98.43022 * 22 12 11 43 43 H 1.08998 * 110.75369 * 279.62840 * 23 22 12 44 44 H 1.08994 * 110.75321 * 156.25978 * 23 22 12 45 45 H 1.09007 * 110.48519 * 203.37540 * 24 23 22 46 46 H 1.09001 * 110.48977 * 80.73375 * 24 23 22 47 47 H 1.08998 * 110.03110 * 238.56785 * 25 12 11 48 48 H 1.09004 * 110.03905 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5065 0.7352 0.0048 5 7 3.5344 -0.6663 -0.0007 6 6 4.7313 -1.5111 -0.0005 7 6 5.1478 -1.8057 -1.4429 8 6 6.3794 -2.6742 -1.4426 9 8 6.8749 -3.0235 -0.3922 10 7 6.9297 -3.0636 -2.6098 11 6 8.1304 -3.9029 -2.6095 12 6 8.4795 -4.2941 -4.0469 13 7 7.3361 -4.9582 -4.6777 14 6 6.8155 -6.0975 -4.1245 15 1 7.2998 -6.5553 -3.2746 16 6 5.6651 -6.6642 -4.6560 17 7 5.0751 -6.1065 -5.6920 18 14 4.9545 -8.2179 -3.9010 19 1 4.6054 -7.9631 -2.4803 20 1 3.7344 -8.6175 -4.6471 21 1 5.9593 -9.3089 -3.9758 22 6 9.7066 -5.2290 -4.0569 23 6 10.4996 -4.8013 -5.3168 24 6 10.3255 -3.2623 -5.3242 25 6 8.8730 -3.0436 -4.8526 26 6 2.2542 -1.0930 -0.0005 27 8 1.8804 -2.2524 -0.0006 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.9250 2.1373 0.0004 32 1 4.5150 -2.4475 0.5137 33 1 5.5414 -0.9933 0.5130 34 1 5.3641 -0.8693 -1.9572 35 1 4.3377 -2.3235 -1.9564 36 1 6.5331 -2.7845 -3.4498 37 1 8.9608 -3.3489 -2.1718 38 1 7.9446 -4.8027 -2.0230 39 1 6.9480 -4.5909 -5.4872 40 1 4.2714 -6.5026 -6.0637 41 1 10.3069 -5.0801 -3.1595 42 1 9.3926 -6.2695 -4.1388 43 1 10.0668 -5.2434 -6.2142 44 1 11.5514 -5.0706 -5.2210 45 1 10.4633 -2.8676 -6.3309 46 1 11.0258 -2.7958 -4.6313 47 1 8.2139 -2.9314 -5.7134 48 1 8.8158 -2.1581 -4.2195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753666389.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:58 Heat of formation + Delta-G solvation = -9.579947 kcal Electronic energy + Delta-G solvation = -29703.477141 eV Core-core repulsion = 25601.589262 eV Total energy + Delta-G solvation = -4101.887879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.41413 -40.96071 -39.62034 -38.45379 -36.69847 -35.56998 -35.12871 -33.82107 -32.44939 -31.08939 -29.57051 -29.39716 -28.28627 -26.52291 -25.53758 -24.53488 -23.25622 -22.21058 -21.74293 -21.02407 -20.07743 -18.96691 -18.81496 -18.06067 -17.68332 -17.33090 -17.07830 -16.74035 -16.58153 -16.37188 -16.12184 -15.79688 -15.44216 -15.20116 -14.80689 -14.74335 -14.46115 -14.07290 -14.00246 -13.87907 -13.52060 -13.42853 -13.24760 -13.21596 -12.94364 -12.90104 -12.47327 -12.41242 -12.40382 -12.17943 -11.87405 -11.72930 -11.59626 -11.41808 -11.38288 -11.31850 -11.17601 -10.97101 -10.79405 -9.93851 -9.68249 -8.96426 -7.94159 -5.18562 0.70332 1.09398 1.40131 1.43553 1.46888 1.53484 1.61628 2.16268 2.44161 2.54639 3.37799 3.44224 3.64843 3.77160 3.82890 3.88250 3.96303 4.00412 4.11466 4.15773 4.27088 4.32736 4.46008 4.51935 4.58808 4.63673 4.67636 4.68009 4.77224 4.79984 4.87553 4.94344 4.98212 5.05718 5.08542 5.14427 5.19730 5.28038 5.40516 5.48469 5.57683 5.60784 5.67280 5.70421 6.30323 6.60013 6.62344 6.92349 7.24581 7.37880 8.12475 8.36067 9.28109 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010731 B = 0.003147 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.613699 B = 8896.501767 C =10594.532069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.558 5.558 3 C 0.281 3.719 4 N -0.312 5.312 5 N -0.457 5.457 6 C 0.185 3.815 7 C -0.143 4.143 8 C 0.516 3.484 9 O -0.588 6.588 10 N -0.695 5.695 11 C 0.126 3.874 12 C 0.183 3.817 13 N -0.714 5.714 14 C -0.213 4.213 15 H 0.062 0.938 16 C -0.063 4.063 17 N -0.959 5.959 18 Si 0.945 3.055 19 H -0.295 1.295 20 H -0.296 1.296 21 H -0.279 1.279 22 C -0.132 4.132 23 C -0.113 4.113 24 C -0.111 4.111 25 C -0.120 4.120 26 C 0.620 3.380 27 O -0.604 6.604 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.065 0.935 31 H 0.294 0.706 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.407 0.593 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.376 0.624 40 H 0.247 0.753 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.048 0.952 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.061 0.939 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 21.813 6.962 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.017 4.017 4 N -0.133 5.133 5 N -0.277 5.277 6 C 0.063 3.937 7 C -0.184 4.184 8 C 0.302 3.698 9 O -0.470 6.470 10 N -0.344 5.344 11 C 0.000 4.000 12 C 0.092 3.908 13 N -0.354 5.354 14 C -0.346 4.346 15 H 0.080 0.920 16 C -0.256 4.256 17 N -0.611 5.611 18 Si 0.777 3.223 19 H -0.222 1.222 20 H -0.222 1.222 21 H -0.205 1.205 22 C -0.172 4.172 23 C -0.151 4.151 24 C -0.149 4.149 25 C -0.158 4.158 26 C 0.319 3.681 27 O -0.481 6.481 28 H 0.105 0.895 29 H 0.154 0.846 30 H 0.084 0.916 31 H 0.309 0.691 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.242 0.758 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.209 0.791 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.080 0.920 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.828 20.857 7.797 22.282 hybrid contribution -1.894 -1.809 -0.319 2.639 sum -2.723 19.048 7.478 20.644 Atomic orbital electron populations 1.22177 0.71852 1.06030 1.04834 1.46174 1.10205 1.05919 1.66273 1.27216 0.84317 0.96066 0.94065 1.77017 1.20386 0.90047 1.25879 1.49009 1.05647 1.04373 1.68647 1.20969 0.83754 0.92974 0.96015 1.21871 0.95697 1.01540 0.99267 1.20582 0.85019 0.80556 0.83614 1.90648 1.65036 1.58963 1.32313 1.45721 1.29505 1.50788 1.08389 1.21797 0.86347 0.92984 0.98904 1.20756 0.87790 0.92296 0.89941 1.42616 1.34717 1.28336 1.29749 1.19184 1.04314 1.01428 1.09656 0.92026 1.25175 0.99077 1.01786 0.99523 1.69733 1.22036 1.42585 1.26700 0.85633 0.77814 0.81642 0.77232 1.22244 1.22196 1.20517 1.22784 0.96472 0.99332 0.98660 1.22353 0.99563 0.96296 0.96848 1.22293 0.95367 0.95470 1.01761 1.22383 0.97740 0.96308 0.99344 1.17244 0.83130 0.85571 0.82163 1.91074 1.78605 1.17767 1.60703 0.89542 0.84607 0.91570 0.69118 0.90535 0.86895 0.85721 0.89849 0.75791 0.91052 0.95091 0.79078 0.94365 0.91110 0.93608 0.93351 0.90351 0.90716 0.90038 0.92013 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 11.05 127.77 1.41 2.23 16 2 N -0.56 -9.71 3.14 -683.68 -2.15 -11.86 16 3 C 0.28 3.06 12.66 179.83 2.28 5.34 16 4 N -0.31 -6.25 12.53 -59.42 -0.74 -6.99 16 5 N -0.46 -12.60 3.63 -478.03 -1.73 -14.33 16 6 C 0.18 5.47 5.68 86.38 0.49 5.96 16 7 C -0.14 -4.23 6.02 29.85 0.18 -4.05 16 8 C 0.52 18.54 7.83 87.66 0.69 19.22 16 9 O -0.59 -24.60 15.98 -3.02 -0.05 -24.65 16 10 N -0.70 -24.62 5.10 -463.05 -2.36 -26.99 16 11 C 0.13 4.63 3.99 86.38 0.34 4.97 16 12 C 0.18 6.52 0.68 4.33 0.00 6.52 16 13 N -0.71 -32.76 4.76 -300.07 -1.43 -34.19 16 14 C -0.21 -11.46 8.39 84.04 0.70 -10.75 16 15 H 0.06 3.36 7.23 -2.91 -0.02 3.34 16 16 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 17 N -0.96 -57.29 13.06 21.65 0.28 -57.01 16 18 Si 0.95 48.11 29.55 68.60 2.03 50.14 16 19 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 20 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 21 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 22 C -0.13 -4.47 5.94 31.67 0.19 -4.28 16 23 C -0.11 -3.15 6.91 31.88 0.22 -2.93 16 24 C -0.11 -2.62 6.83 31.67 0.22 -2.40 16 25 C -0.12 -3.37 5.80 31.32 0.18 -3.19 16 26 C 0.62 18.65 8.60 178.99 1.54 20.19 16 27 O -0.60 -24.29 17.71 -4.71 -0.08 -24.37 16 28 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.14 -0.07 8.14 -2.38 -0.02 -0.09 16 30 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 31 H 0.29 -1.08 8.06 -2.91 -0.02 -1.10 16 32 H 0.08 2.65 8.07 -2.39 -0.02 2.63 16 33 H 0.11 3.04 8.10 -2.39 -0.02 3.02 16 34 H 0.12 2.97 8.14 -2.38 -0.02 2.95 16 35 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.41 13.82 7.99 -92.71 -0.74 13.07 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.03 1.36 7.49 -2.39 -0.02 1.34 16 39 H 0.38 18.49 7.28 -92.71 -0.67 17.82 16 40 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.07 2.12 7.85 -2.39 -0.02 2.10 16 42 H 0.05 1.84 7.12 -2.39 -0.02 1.82 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.06 1.85 7.44 -2.39 -0.02 1.83 16 48 H 0.08 1.96 7.55 -2.39 -0.02 1.94 16 Total: -1.00 -83.20 396.50 2.24 -80.96 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -0.43 Total: 35.57 kcal Atomic # 6 Polarization: 24.81 SS G_CDS: 8.91 Total: 33.72 kcal Atomic # 7 Polarization: -143.23 SS G_CDS: -8.13 Total: -151.36 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -0.13 Total: -49.02 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -83.20 2.24 -80.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753666389.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.381 kcal (2) G-P(sol) polarization free energy of solvation -83.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds