Wall clock time and date at job start Tue Mar 31 2020 20:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00279 * 2 1 4 4 C 1.52996 * 109.47336 * 66.03908 * 3 2 1 5 5 N 1.46501 * 109.47160 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99980 * 269.99831 * 5 4 3 7 7 C 1.34779 * 119.99825 * 90.00901 * 5 4 3 8 8 O 1.21277 * 120.00298 * 359.97438 * 7 5 4 9 9 C 1.50699 * 120.00041 * 180.02562 * 7 5 4 10 10 C 1.50696 * 109.47490 * 179.97438 * 9 7 5 11 11 C 1.39866 * 125.89915 * 125.01392 * 10 9 7 12 12 C 1.35320 * 107.91898 * 179.97438 * 11 10 9 13 13 N 1.34951 * 107.74569 * 359.97438 * 12 11 10 14 14 C 1.46504 * 126.03463 * 180.02562 * 13 12 11 15 15 N 1.30844 * 125.89476 * 304.97479 * 10 9 7 16 16 C 1.46901 * 111.00375 * 236.04288 * 2 1 3 17 17 C 1.50701 * 109.46936 * 293.95451 * 16 2 1 18 18 O 1.21293 * 120.00217 * 0.02562 * 17 16 2 19 19 N 1.34774 * 119.99821 * 180.02562 * 17 16 2 20 20 C 1.37101 * 120.00045 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99843 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00020 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99694 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00045 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47331 * 89.99975 * 24 22 20 26 26 H 1.48498 * 109.46796 * 209.99915 * 24 22 20 27 27 H 1.48492 * 109.47114 * 329.99637 * 24 22 20 28 28 H 1.09000 * 109.46902 * 60.00259 * 1 2 3 29 29 H 1.09000 * 109.46774 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47345 * 300.00636 * 1 2 3 31 31 H 1.09003 * 109.46795 * 306.04527 * 3 2 1 32 32 H 1.08996 * 109.47518 * 186.04585 * 3 2 1 33 33 H 1.08998 * 109.47132 * 60.00550 * 4 3 2 34 34 H 1.09001 * 109.47632 * 300.00402 * 4 3 2 35 35 H 1.08994 * 109.47442 * 269.99863 * 6 5 4 36 36 H 1.08999 * 109.46828 * 30.00602 * 6 5 4 37 37 H 1.09006 * 109.46463 * 150.00093 * 6 5 4 38 38 H 1.09002 * 109.46974 * 59.99026 * 9 7 5 39 39 H 1.09000 * 109.47028 * 299.99901 * 9 7 5 40 40 H 1.07993 * 126.04141 * 359.97438 * 11 10 9 41 41 H 1.07996 * 126.12765 * 180.02562 * 12 11 10 42 42 H 1.09005 * 109.46927 * 270.02579 * 14 13 12 43 43 H 1.08994 * 109.47314 * 30.02415 * 14 13 12 44 44 H 1.08998 * 109.46715 * 150.02896 * 14 13 12 45 45 H 1.08994 * 109.46993 * 53.95551 * 16 2 1 46 46 H 1.08995 * 109.47300 * 173.95501 * 16 2 1 47 47 H 0.97004 * 120.00082 * 359.97438 * 19 17 16 48 48 H 0.97003 * 119.99804 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 1.3181 5 7 2.1560 3.4254 1.3178 6 6 3.5009 3.6943 1.8328 7 6 1.4011 4.4365 0.8440 8 8 0.2879 4.2139 0.4174 9 6 1.9409 5.8435 0.8431 10 6 0.9085 6.7773 0.2660 11 6 0.3996 7.9222 0.8875 12 6 -0.5013 8.4854 0.0494 13 7 -0.5598 7.7240 -1.0633 14 6 -1.4084 7.9697 -2.2320 15 7 0.3341 6.6574 -0.9035 16 6 1.9955 -0.7660 -1.1375 17 6 1.6370 -2.2205 -0.9727 18 8 1.0046 -2.5831 -0.0033 19 7 2.0190 -3.1182 -1.9025 20 6 1.6924 -4.4413 -1.7528 21 1 1.1294 -4.7642 -0.8896 22 6 2.0858 -5.3668 -2.7117 23 7 1.7732 -6.6350 -2.5680 24 14 3.0591 -4.8081 -4.2050 25 1 4.5114 -4.8754 -3.9029 26 1 2.7514 -5.6943 -5.3562 27 1 2.6880 -3.4106 -4.5432 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3444 -0.1082 33 1 2.0657 1.5017 2.1491 34 1 0.5471 2.0846 1.4264 35 1 3.4450 3.9105 2.8996 36 1 4.1329 2.8210 1.6717 37 1 3.9253 4.5514 1.3100 38 1 2.8466 5.8848 0.2380 39 1 2.1727 6.1443 1.8648 40 1 0.6765 8.2916 1.8638 41 1 -1.0707 9.3836 0.2369 42 1 -2.3667 7.4679 -2.0971 43 1 -1.5720 9.0415 -2.3434 44 1 -0.9179 7.5822 -3.1250 45 1 1.5612 -0.3873 -2.0627 46 1 3.0797 -0.6611 -1.1755 47 1 2.5244 -2.8281 -2.6780 48 1 2.0475 -7.2810 -3.2375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753852998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:23 Heat of formation + Delta-G solvation = 36.475359 kcal Electronic energy + Delta-G solvation = -28555.844146 eV Core-core repulsion = 24455.953375 eV Total energy + Delta-G solvation = -4099.890771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48138 -39.94609 -38.68912 -36.78442 -35.40718 -34.17264 -33.84478 -31.64102 -31.24581 -30.27750 -29.35833 -27.77158 -26.91544 -26.19849 -25.06025 -23.68650 -21.48441 -21.30598 -20.34967 -19.31424 -19.01653 -18.18927 -17.37015 -17.15949 -16.48106 -16.08076 -15.75911 -15.58681 -15.20136 -14.92495 -14.64167 -14.27329 -14.15394 -13.96979 -13.79378 -13.45375 -13.32439 -13.05557 -13.01998 -12.90702 -12.78124 -12.65886 -12.47258 -12.41445 -12.31567 -11.99120 -11.81342 -11.39948 -11.23961 -10.97083 -10.81609 -10.73827 -10.56316 -9.96222 -9.93712 -9.49613 -9.47727 -8.90549 -8.82554 -8.47273 -8.13622 -7.89620 -6.27254 -3.78252 1.64797 2.23562 2.41322 2.50619 2.89881 3.06007 3.09761 3.17683 3.79307 4.08729 4.11270 4.14460 4.35678 4.46179 4.60718 4.80913 4.81441 4.84203 4.86676 5.01220 5.04612 5.07435 5.11150 5.24671 5.30176 5.35016 5.40900 5.50346 5.54372 5.60233 5.71216 5.74958 5.81489 5.92013 5.95847 6.01609 6.06844 6.31562 6.36783 6.61587 6.73348 7.18401 7.23654 7.37443 7.49514 7.63120 8.06095 8.19126 8.64906 8.99654 9.46978 9.88734 10.85969 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.001948 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.514081 B =14369.602559 C =15052.450138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.516 5.516 3 C 0.042 3.958 4 C 0.120 3.880 5 N -0.619 5.619 6 C 0.075 3.925 7 C 0.513 3.487 8 O -0.518 6.518 9 C -0.056 4.056 10 C 0.080 3.920 11 C -0.267 4.267 12 C 0.049 3.951 13 N -0.376 5.376 14 C 0.102 3.898 15 N -0.262 5.262 16 C 0.044 3.956 17 C 0.455 3.545 18 O -0.558 6.558 19 N -0.593 5.593 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.040 3.960 23 N -0.883 5.883 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.016 0.984 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.147 0.853 41 H 0.173 0.827 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 34.321 4.719 34.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.240 5.240 3 C -0.088 4.088 4 C -0.003 4.003 5 N -0.354 5.354 6 C -0.068 4.068 7 C 0.300 3.700 8 O -0.392 6.392 9 C -0.098 4.098 10 C -0.088 4.088 11 C -0.296 4.296 12 C -0.096 4.096 13 N -0.159 5.159 14 C -0.040 4.040 15 N -0.084 5.084 16 C -0.087 4.087 17 C 0.240 3.760 18 O -0.439 6.439 19 N -0.232 5.232 20 C -0.431 4.431 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.035 0.965 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.165 0.835 41 H 0.190 0.810 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.202 0.798 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.407 32.845 4.294 33.155 hybrid contribution 0.634 1.218 -1.339 1.918 sum 2.041 34.063 2.955 34.252 Atomic orbital electron populations 1.22584 0.86420 1.04290 0.99428 1.61528 1.09022 1.11045 1.42443 1.22436 1.00003 0.89043 0.97282 1.21446 1.00925 0.79956 0.97950 1.47852 1.16647 1.07707 1.63176 1.21864 0.83088 1.02680 0.99179 1.20410 0.85584 0.86420 0.77601 1.90762 1.19513 1.84294 1.44664 1.20056 0.96740 0.90110 1.02879 1.21540 0.98322 0.95837 0.93081 1.21323 1.05359 0.99874 1.03063 1.22495 1.00673 0.98383 0.88084 1.48555 1.32914 1.19638 1.14757 1.21854 0.93675 1.02245 0.86196 1.77457 1.05684 1.05911 1.19361 1.21886 1.00660 0.93942 0.92258 1.19640 0.84974 0.86414 0.84944 1.90524 1.42486 1.79952 1.30987 1.42217 1.51160 1.08370 1.21489 1.19429 1.33679 0.80311 1.09720 0.86262 1.25031 0.97956 0.95149 0.98099 1.69623 1.45824 1.01127 1.35707 0.86674 0.80888 0.78711 0.83140 1.19624 1.20237 1.19547 0.96543 0.88598 0.91884 0.94698 0.91017 0.89390 0.89601 0.92254 0.90514 0.91036 0.87348 0.86997 0.83509 0.81012 0.90663 0.89525 0.89273 0.93395 0.89359 0.79753 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.96 60.06 0.54 0.90 16 2 N -0.52 -8.88 4.50 -244.38 -1.10 -9.98 16 3 C 0.04 0.58 5.28 -3.83 -0.02 0.56 16 4 C 0.12 1.48 5.33 -4.04 -0.02 1.46 16 5 N -0.62 -6.25 2.87 -181.57 -0.52 -6.78 16 6 C 0.08 0.43 10.24 59.85 0.61 1.04 16 7 C 0.51 6.15 7.66 -10.98 -0.08 6.07 16 8 O -0.52 -8.70 15.14 5.56 0.08 -8.62 16 9 C -0.06 -0.47 4.83 -29.04 -0.14 -0.61 16 10 C 0.08 0.88 6.01 -82.41 -0.50 0.39 16 11 C -0.27 -2.36 10.72 -40.01 -0.43 -2.79 16 12 C 0.05 0.39 11.49 -17.22 -0.20 0.20 16 13 N -0.38 -3.77 4.01 -68.16 -0.27 -4.04 16 14 C 0.10 0.60 11.47 59.85 0.69 1.29 16 15 N -0.26 -3.49 11.92 33.67 0.40 -3.09 16 16 C 0.04 0.79 5.45 -4.98 -0.03 0.76 16 17 C 0.45 10.65 7.48 -10.99 -0.08 10.57 16 18 O -0.56 -15.17 13.91 5.55 0.08 -15.10 16 19 N -0.59 -14.48 5.09 -10.96 -0.06 -14.54 16 20 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 21 H 0.12 3.90 7.39 -52.48 -0.39 3.52 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -26.13 13.96 55.50 0.77 -25.35 16 24 Si 0.88 19.74 27.74 -169.99 -4.71 15.03 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -5.57 6.52 56.52 0.37 -5.20 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.10 2.00 5.82 -51.93 -0.30 1.69 16 30 H 0.06 1.02 6.47 -51.93 -0.34 0.68 16 31 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 33 H 0.09 1.00 8.07 -51.93 -0.42 0.59 16 34 H 0.09 1.24 5.83 -51.93 -0.30 0.93 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 37 H 0.07 0.26 6.44 -51.93 -0.33 -0.07 16 38 H 0.11 0.69 7.40 -51.93 -0.38 0.31 16 39 H 0.11 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 46 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 47 H 0.37 7.98 5.76 -40.82 -0.24 7.74 16 48 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 397.05 15.07 5.98 5.98 Total: -1.00 -39.57 397.05 -6.59 -46.15 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.34 Total: 8.32 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 0.09 Total: 12.01 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -0.77 Total: -63.78 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.16 Total: -23.71 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.71 Total: 15.03 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.57 -6.59 -46.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753852998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.630 kcal (2) G-P(sol) polarization free energy of solvation -39.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds