Wall clock time and date at job start Tue Mar 31 2020 20:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00279 * 2 1 4 4 C 1.52996 * 109.47336 * 66.03908 * 3 2 1 5 5 N 1.46501 * 109.47160 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99980 * 269.99831 * 5 4 3 7 7 C 1.34779 * 119.99825 * 90.00901 * 5 4 3 8 8 O 1.21277 * 120.00298 * 359.97438 * 7 5 4 9 9 C 1.50699 * 120.00041 * 180.02562 * 7 5 4 10 10 C 1.50696 * 109.47490 * 179.97438 * 9 7 5 11 11 C 1.39866 * 125.89915 * 125.01392 * 10 9 7 12 12 C 1.35320 * 107.91898 * 179.97438 * 11 10 9 13 13 N 1.34951 * 107.74569 * 359.97438 * 12 11 10 14 14 C 1.46504 * 126.03463 * 180.02562 * 13 12 11 15 15 N 1.30844 * 125.89476 * 304.97479 * 10 9 7 16 16 C 1.46901 * 111.00375 * 236.04288 * 2 1 3 17 17 C 1.50701 * 109.46936 * 293.95451 * 16 2 1 18 18 O 1.21293 * 120.00217 * 0.02562 * 17 16 2 19 19 N 1.34774 * 119.99821 * 180.02562 * 17 16 2 20 20 C 1.37101 * 120.00045 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99843 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00020 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99694 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00045 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47331 * 89.99975 * 24 22 20 26 26 H 1.48498 * 109.46796 * 209.99915 * 24 22 20 27 27 H 1.48492 * 109.47114 * 329.99637 * 24 22 20 28 28 H 1.09000 * 109.46902 * 60.00259 * 1 2 3 29 29 H 1.09000 * 109.46774 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47345 * 300.00636 * 1 2 3 31 31 H 1.09003 * 109.46795 * 306.04527 * 3 2 1 32 32 H 1.08996 * 109.47518 * 186.04585 * 3 2 1 33 33 H 1.08998 * 109.47132 * 60.00550 * 4 3 2 34 34 H 1.09001 * 109.47632 * 300.00402 * 4 3 2 35 35 H 1.08994 * 109.47442 * 269.99863 * 6 5 4 36 36 H 1.08999 * 109.46828 * 30.00602 * 6 5 4 37 37 H 1.09006 * 109.46463 * 150.00093 * 6 5 4 38 38 H 1.09002 * 109.46974 * 59.99026 * 9 7 5 39 39 H 1.09000 * 109.47028 * 299.99901 * 9 7 5 40 40 H 1.07993 * 126.04141 * 359.97438 * 11 10 9 41 41 H 1.07996 * 126.12765 * 180.02562 * 12 11 10 42 42 H 1.09005 * 109.46927 * 270.02579 * 14 13 12 43 43 H 1.08994 * 109.47314 * 30.02415 * 14 13 12 44 44 H 1.08998 * 109.46715 * 150.02896 * 14 13 12 45 45 H 1.08994 * 109.46993 * 53.95551 * 16 2 1 46 46 H 1.08995 * 109.47300 * 173.95501 * 16 2 1 47 47 H 0.97004 * 120.00082 * 359.97438 * 19 17 16 48 48 H 0.97003 * 119.99804 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 1.3181 5 7 2.1560 3.4254 1.3178 6 6 3.5009 3.6943 1.8328 7 6 1.4011 4.4365 0.8440 8 8 0.2879 4.2139 0.4174 9 6 1.9409 5.8435 0.8431 10 6 0.9085 6.7773 0.2660 11 6 0.3996 7.9222 0.8875 12 6 -0.5013 8.4854 0.0494 13 7 -0.5598 7.7240 -1.0633 14 6 -1.4084 7.9697 -2.2320 15 7 0.3341 6.6574 -0.9035 16 6 1.9955 -0.7660 -1.1375 17 6 1.6370 -2.2205 -0.9727 18 8 1.0046 -2.5831 -0.0033 19 7 2.0190 -3.1182 -1.9025 20 6 1.6924 -4.4413 -1.7528 21 1 1.1294 -4.7642 -0.8896 22 6 2.0858 -5.3668 -2.7117 23 7 1.7732 -6.6350 -2.5680 24 14 3.0591 -4.8081 -4.2050 25 1 4.5114 -4.8754 -3.9029 26 1 2.7514 -5.6943 -5.3562 27 1 2.6880 -3.4106 -4.5432 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3444 -0.1082 33 1 2.0657 1.5017 2.1491 34 1 0.5471 2.0846 1.4264 35 1 3.4450 3.9105 2.8996 36 1 4.1329 2.8210 1.6717 37 1 3.9253 4.5514 1.3100 38 1 2.8466 5.8848 0.2380 39 1 2.1727 6.1443 1.8648 40 1 0.6765 8.2916 1.8638 41 1 -1.0707 9.3836 0.2369 42 1 -2.3667 7.4679 -2.0971 43 1 -1.5720 9.0415 -2.3434 44 1 -0.9179 7.5822 -3.1250 45 1 1.5612 -0.3873 -2.0627 46 1 3.0797 -0.6611 -1.1755 47 1 2.5244 -2.8281 -2.6780 48 1 2.0475 -7.2810 -3.2375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753852998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:21 Heat of formation + Delta-G solvation = 4.490482 kcal Electronic energy + Delta-G solvation = -28557.231114 eV Core-core repulsion = 24455.953375 eV Total energy + Delta-G solvation = -4101.277740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.12325 -40.87116 -40.42144 -38.17289 -36.44131 -35.86550 -34.79735 -33.76179 -32.04608 -31.00742 -30.27892 -29.22048 -27.63997 -27.10125 -26.49232 -25.08261 -22.56768 -22.02860 -21.28565 -21.14631 -20.20254 -19.75583 -18.13776 -17.87408 -17.81434 -17.25630 -16.88780 -16.60282 -16.55537 -16.18557 -15.95720 -15.58830 -15.32418 -14.98654 -14.80650 -14.55631 -14.36565 -14.28555 -14.25878 -13.87166 -13.71787 -13.63901 -13.42091 -13.21802 -13.14736 -13.09542 -13.01949 -12.73224 -12.61285 -12.56729 -12.41542 -11.98696 -11.85122 -11.49322 -11.47985 -10.86440 -10.42719 -10.23894 -10.17914 -9.66697 -9.44149 -9.32213 -8.41369 -6.01949 1.02033 1.29793 1.34749 1.43553 1.66177 1.68796 1.76553 1.94256 2.12904 2.22552 2.69190 3.13501 3.24509 3.52232 3.74539 3.90957 3.96479 4.06964 4.12675 4.19174 4.31137 4.36385 4.38208 4.39499 4.41459 4.46891 4.54558 4.56004 4.59171 4.65705 4.78532 4.81313 4.84361 4.91789 4.94777 5.06143 5.13408 5.16374 5.49966 5.53620 5.72495 5.84193 5.96021 6.08659 6.22526 6.43699 6.59428 6.84041 6.88033 7.23550 7.39116 7.96183 8.76234 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.001948 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.514081 B =14369.602559 C =15052.450138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.530 5.530 3 C 0.052 3.948 4 C 0.124 3.876 5 N -0.614 5.614 6 C 0.067 3.933 7 C 0.507 3.493 8 O -0.577 6.577 9 C -0.049 4.049 10 C 0.062 3.938 11 C -0.283 4.283 12 C 0.052 3.948 13 N -0.389 5.389 14 C 0.094 3.906 15 N -0.324 5.324 16 C 0.054 3.946 17 C 0.453 3.547 18 O -0.603 6.603 19 N -0.592 5.592 20 C -0.326 4.326 21 H 0.056 0.944 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.254 1.254 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.018 0.982 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.020 0.980 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.131 0.869 39 H 0.148 0.852 40 H 0.172 0.828 41 H 0.212 0.788 42 H 0.073 0.927 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.127 0.873 47 H 0.389 0.611 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.296 38.171 3.873 38.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.254 5.254 3 C -0.077 4.077 4 C 0.001 3.999 5 N -0.347 5.347 6 C -0.075 4.075 7 C 0.295 3.705 8 O -0.456 6.456 9 C -0.090 4.090 10 C -0.105 4.105 11 C -0.312 4.312 12 C -0.094 4.094 13 N -0.171 5.171 14 C -0.046 4.046 15 N -0.147 5.147 16 C -0.077 4.077 17 C 0.240 3.760 18 O -0.487 6.487 19 N -0.234 5.234 20 C -0.456 4.456 21 H 0.074 0.926 22 C -0.214 4.214 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.178 1.178 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.039 0.961 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.190 0.810 41 H 0.229 0.771 42 H 0.092 0.908 43 H 0.141 0.859 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.144 0.856 47 H 0.224 0.776 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.264 36.730 3.469 37.139 hybrid contribution -0.333 0.030 -0.935 0.993 sum 3.931 36.760 2.534 37.057 Atomic orbital electron populations 1.22385 0.87415 1.01919 1.00086 1.61495 1.08350 1.13162 1.42406 1.22438 1.01110 0.86643 0.97469 1.21250 0.99566 0.81527 0.97585 1.47938 1.18071 1.06270 1.62432 1.22203 0.80623 1.04126 1.00518 1.21110 0.84928 0.87971 0.76465 1.90736 1.22204 1.85285 1.47395 1.20200 0.96543 0.87074 1.05209 1.22093 0.98667 0.96849 0.92884 1.21745 1.05624 0.99501 1.04301 1.23218 1.00164 0.98915 0.87059 1.48885 1.32844 1.19253 1.16146 1.22109 0.92892 1.04584 0.84999 1.77353 1.07882 1.08243 1.21247 1.21844 1.03000 0.89502 0.93338 1.20777 0.83019 0.88611 0.83559 1.90515 1.44011 1.81348 1.32821 1.42031 1.51846 1.06844 1.22658 1.18999 1.34774 0.82971 1.08819 0.92577 1.26104 0.98701 0.94687 1.01925 1.69804 1.47201 1.02955 1.37493 0.85368 0.79195 0.79921 0.77062 1.17812 1.20024 1.15884 0.96336 0.92222 0.90934 0.96144 0.88367 0.88282 0.92421 0.90449 0.89857 0.88437 0.85154 0.83419 0.81033 0.77093 0.90800 0.85866 0.90004 0.91341 0.85561 0.77569 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 8.96 127.69 1.14 2.24 16 2 N -0.53 -17.73 4.50 -927.08 -4.17 -21.90 16 3 C 0.05 1.34 5.28 86.30 0.46 1.80 16 4 C 0.12 2.94 5.33 86.38 0.46 3.40 16 5 N -0.61 -11.15 2.87 -846.77 -2.43 -13.58 16 6 C 0.07 0.51 10.24 127.77 1.31 1.82 16 7 C 0.51 11.62 7.66 87.66 0.67 12.29 16 8 O -0.58 -19.91 15.14 -3.02 -0.05 -19.95 16 9 C -0.05 -0.71 4.83 29.10 0.14 -0.57 16 10 C 0.06 1.31 6.01 43.10 0.26 1.57 16 11 C -0.28 -4.46 10.72 21.99 0.24 -4.22 16 12 C 0.05 0.73 11.49 83.54 0.96 1.69 16 13 N -0.39 -7.52 4.01 -369.56 -1.48 -9.00 16 14 C 0.09 1.05 11.47 127.77 1.47 2.52 16 15 N -0.32 -8.68 11.92 -47.39 -0.56 -9.24 16 16 C 0.05 1.83 5.45 85.56 0.47 2.30 16 17 C 0.45 21.34 7.48 87.66 0.66 22.00 16 18 O -0.60 -34.31 13.91 -3.07 -0.04 -34.35 16 19 N -0.59 -28.84 5.09 -306.98 -1.56 -30.40 16 20 C -0.33 -19.52 10.16 84.04 0.85 -18.67 16 21 H 0.06 3.98 7.39 -2.91 -0.02 3.96 16 22 C -0.02 -0.88 5.50 84.93 0.47 -0.42 16 23 N -0.93 -57.11 13.96 21.66 0.30 -56.81 16 24 Si 0.96 39.65 27.74 68.60 1.90 41.55 16 25 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 26 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.24 -8.29 6.52 99.48 0.65 -7.65 16 28 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 29 H 0.06 2.61 5.82 -2.39 -0.01 2.60 16 30 H 0.07 2.45 6.47 -2.39 -0.02 2.44 16 31 H 0.02 0.60 8.12 -2.39 -0.02 0.58 16 32 H 0.10 2.02 7.93 -2.39 -0.02 2.01 16 33 H 0.10 2.10 8.07 -2.39 -0.02 2.08 16 34 H 0.06 1.70 5.83 -2.39 -0.01 1.69 16 35 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.08 0.58 8.07 -2.39 -0.02 0.56 16 37 H 0.10 0.27 6.44 -2.38 -0.02 0.26 16 38 H 0.13 1.25 7.40 -2.39 -0.02 1.24 16 39 H 0.15 0.96 8.09 -2.39 -0.02 0.94 16 40 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 41 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 46 H 0.13 3.36 7.93 -2.39 -0.02 3.34 16 47 H 0.39 15.77 5.76 -92.71 -0.53 15.24 16 48 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -95.64 397.05 1.83 -93.81 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.38 Total: 32.14 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: 9.54 Total: 27.74 kcal Atomic # 7 Polarization: -131.02 SS G_CDS: -9.91 Total: -140.94 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -0.09 Total: -54.31 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 1.90 Total: 41.55 kcal Total: -95.64 1.83 -93.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753852998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.302 kcal (2) G-P(sol) polarization free energy of solvation -95.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds