Wall clock time and date at job start Tue Mar 31 2020 21:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36939 * 120.00012 * 2 1 4 4 H 1.07991 * 120.00160 * 203.04784 * 3 2 1 5 5 C 1.38820 * 119.99764 * 23.05236 * 3 2 1 6 6 N 1.31614 * 120.00139 * 12.92052 * 5 3 2 7 7 Si 1.86793 * 119.99615 * 192.92580 * 5 3 2 8 8 H 1.48496 * 109.47317 * 90.00150 * 7 5 3 9 9 H 1.48503 * 109.47152 * 209.99632 * 7 5 3 10 10 H 1.48506 * 109.47422 * 329.99736 * 7 5 3 11 11 C 1.46494 * 119.99781 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47498 * 89.99892 * 11 2 1 13 13 N 1.46503 * 109.47535 * 179.97438 * 12 11 2 14 14 C 1.46499 * 119.99817 * 270.00246 * 13 12 11 15 15 C 1.34772 * 120.00203 * 89.99516 * 13 12 11 16 16 O 1.21293 * 119.99927 * 0.02562 * 15 13 12 17 17 C 1.50699 * 120.00278 * 180.02562 * 15 13 12 18 18 N 1.46503 * 109.47276 * 179.97438 * 17 15 13 19 19 N 1.40312 * 126.32754 * 270.02843 * 18 17 15 20 20 C 1.28879 * 108.11768 * 180.35511 * 19 18 17 21 21 N 1.38112 * 108.89612 * 0.79805 * 20 19 18 22 22 C 1.34310 * 108.29603 * 358.28857 * 21 20 19 23 23 O 1.21819 * 126.32458 * 181.84620 * 22 21 20 24 24 C 1.46717 * 124.21542 * 177.65340 * 21 20 19 25 25 C 1.53284 * 108.66144 * 19.13219 * 24 21 20 26 26 C 1.53240 * 109.34974 * 308.25530 * 25 24 21 27 27 C 1.51113 * 127.45544 * 180.92229 * 20 19 18 28 28 H 1.08997 * 109.46556 * 275.11993 * 1 2 3 29 29 H 1.08993 * 109.46947 * 35.11663 * 1 2 3 30 30 H 1.08992 * 109.46750 * 155.12074 * 1 2 3 31 31 H 0.96997 * 120.00115 * 180.02562 * 6 5 3 32 32 H 1.09003 * 109.47207 * 329.99267 * 11 2 1 33 33 H 1.09007 * 109.46885 * 209.99791 * 11 2 1 34 34 H 1.09003 * 109.47401 * 59.99494 * 12 11 2 35 35 H 1.09000 * 109.47300 * 299.99634 * 12 11 2 36 36 H 1.08997 * 109.47097 * 269.99002 * 14 13 12 37 37 H 1.08995 * 109.47531 * 29.99405 * 14 13 12 38 38 H 1.09001 * 109.47030 * 149.99745 * 14 13 12 39 39 H 1.09004 * 109.46988 * 60.00230 * 17 15 13 40 40 H 1.08993 * 109.46988 * 300.00114 * 17 15 13 41 41 H 1.08998 * 109.59816 * 259.38174 * 24 21 20 42 42 H 1.08996 * 109.60776 * 138.88900 * 24 21 20 43 43 H 1.08995 * 109.49186 * 188.28337 * 25 24 21 44 44 H 1.08998 * 109.48947 * 68.21496 * 25 24 21 45 45 H 1.08996 * 109.54573 * 310.91194 * 26 25 24 46 46 H 1.09000 * 109.62437 * 190.67501 * 26 25 24 47 47 H 1.08997 * 109.75353 * 78.15845 * 27 20 19 48 48 H 1.08996 * 109.75686 * 317.46919 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5388 2.3401 0.4708 6 7 0.4119 2.2597 1.1459 7 14 2.3160 4.0073 0.1458 8 1 1.7988 4.5535 -1.1346 9 1 1.9760 4.9363 1.2534 10 1 3.7910 3.8577 0.0603 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 7 3.1855 -2.9783 -1.4437 14 6 4.6505 -2.9777 -1.4439 15 6 2.5121 -4.1457 -1.4440 16 8 1.2992 -4.1462 -1.4442 17 6 3.2661 -5.4505 -1.4440 18 7 2.3145 -6.5645 -1.4436 19 7 1.7745 -7.1960 -0.3130 20 6 0.9851 -8.1319 -0.7155 21 7 0.9924 -8.1602 -2.0963 22 6 1.7931 -7.1747 -2.5340 23 8 2.0107 -6.8846 -3.6969 24 6 0.2476 -9.1313 -2.9055 25 6 -0.8581 -9.7457 -2.0397 26 6 -0.2499 -10.2653 -0.7327 27 6 0.1621 -9.0698 0.1369 28 1 -0.3632 0.0917 1.0236 29 1 -0.3633 0.8406 -0.5911 30 1 -0.3632 -0.9322 -0.4323 31 1 -0.0152 3.0662 1.4746 32 1 1.6084 -2.0286 0.5130 33 1 3.1500 -1.1386 0.5133 34 1 3.0416 -0.9500 -1.9568 35 1 1.5001 -1.8400 -1.9571 36 1 5.0137 -2.9773 -2.4716 37 1 5.0136 -2.0878 -0.9299 38 1 5.0142 -3.8677 -0.9304 39 1 3.8926 -5.5081 -0.5538 40 1 3.8929 -5.5079 -2.3338 41 1 0.9224 -9.9158 -3.2480 42 1 -0.1972 -8.6277 -3.7637 43 1 -1.3246 -10.5711 -2.5773 44 1 -1.6081 -8.9872 -1.8155 45 1 0.6266 -10.8739 -0.9550 46 1 -0.9863 -10.8671 -0.2001 47 1 -0.7271 -8.5539 0.4991 48 1 0.7564 -9.4167 0.9822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753874379.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:44 Heat of formation + Delta-G solvation = 41.923058 kcal Electronic energy + Delta-G solvation = -29714.289626 eV Core-core repulsion = 25614.635085 eV Total energy + Delta-G solvation = -4099.654541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.67641 -39.67556 -37.85332 -36.97771 -36.04062 -34.86925 -33.73511 -32.75824 -31.46789 -29.53004 -28.80085 -27.70704 -26.39710 -25.72798 -24.79101 -23.28751 -22.96873 -21.79929 -20.52836 -20.07304 -19.12825 -17.60007 -17.30255 -16.78217 -16.55815 -16.22229 -16.04173 -15.56844 -15.20046 -14.90325 -14.71019 -14.62677 -14.52328 -13.74868 -13.64342 -13.55503 -13.28736 -13.15566 -12.95785 -12.58759 -12.37645 -12.27797 -12.10466 -12.07821 -11.99598 -11.62072 -11.49023 -11.44621 -11.23980 -10.84194 -10.80604 -10.47145 -10.45114 -10.29408 -10.15653 -9.87502 -9.76784 -9.55956 -8.67719 -8.57383 -8.36037 -6.68160 -5.67514 -3.15708 1.52710 1.80704 2.58182 2.72586 2.79395 3.26476 3.40311 3.46065 3.47541 3.90548 4.11319 4.19557 4.29562 4.49484 4.55255 4.57751 4.79707 4.88285 4.93483 5.00330 5.12593 5.18937 5.22070 5.27118 5.34983 5.41205 5.46476 5.48602 5.63880 5.67094 5.72080 5.76571 5.77618 5.97089 6.20508 6.34060 6.36891 6.58453 6.69366 6.92642 7.00944 7.45940 7.51752 7.56900 7.79320 7.84990 7.95319 8.33033 8.44554 9.27578 9.91173 10.41603 11.36849 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.002314 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.394263 B =12097.436600 C =12732.704868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.600 5.600 3 C -0.257 4.257 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.609 5.609 14 C 0.074 3.926 15 C 0.492 3.508 16 O -0.524 6.524 17 C 0.146 3.854 18 N -0.439 5.439 19 N -0.265 5.265 20 C 0.275 3.725 21 N -0.556 5.556 22 C 0.657 3.343 23 O -0.555 6.555 24 C 0.132 3.868 25 C -0.138 4.138 26 C -0.123 4.123 27 C -0.040 4.040 28 H 0.031 0.969 29 H 0.040 0.960 30 H 0.000 1.000 31 H 0.252 0.748 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.104 0.896 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.373 -28.881 -4.062 29.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.323 5.323 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.016 3.984 12 C -0.030 4.030 13 N -0.343 5.343 14 C -0.070 4.070 15 C 0.277 3.723 16 O -0.399 6.399 17 C 0.020 3.980 18 N -0.258 5.258 19 N -0.086 5.086 20 C -0.004 4.004 21 N -0.286 5.286 22 C 0.357 3.643 23 O -0.428 6.428 24 C 0.010 3.990 25 C -0.176 4.176 26 C -0.162 4.162 27 C -0.080 4.080 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.122 0.878 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.221 -27.960 -4.044 28.434 hybrid contribution 0.211 0.925 -0.826 1.258 sum 3.432 -27.035 -4.870 27.684 Atomic orbital electron populations 1.20802 0.82422 0.95558 0.99469 1.43847 1.01984 1.00426 1.86034 1.19180 0.98249 0.85603 1.35609 0.91444 1.25051 0.97927 0.98561 0.98186 1.70085 1.19410 1.27143 1.38435 0.86241 0.78667 0.84135 0.77379 1.21515 1.21763 1.20504 1.20964 0.96184 0.88661 0.92635 1.22551 0.96736 0.81816 1.01941 1.47950 1.06921 1.06481 1.72979 1.21861 0.79790 1.03485 1.01825 1.20791 0.88613 0.85427 0.77450 1.90738 1.13655 1.86878 1.48613 1.21295 0.88919 0.81601 1.06165 1.48381 1.42946 1.31618 1.02879 1.76758 1.13195 1.08484 1.10178 1.24274 0.96941 0.96384 0.82779 1.46034 1.44510 1.31010 1.07025 1.16509 0.81289 0.80982 0.85498 1.91072 1.66689 1.69921 1.15139 1.21775 0.93365 0.90115 0.93733 1.21993 0.97462 1.01726 0.96415 1.21716 1.01957 0.96845 0.95639 1.20499 0.98528 0.92715 0.96230 0.95080 0.94131 0.98096 0.93752 0.94408 0.93603 0.90620 0.90661 0.92457 0.90104 0.91487 0.85889 0.86098 0.90075 0.89042 0.88894 0.90251 0.90765 0.89387 0.87811 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.35 8.98 59.85 0.54 4.89 16 2 N -0.60 -15.99 2.92 -181.12 -0.53 -16.52 16 3 C -0.26 -7.21 9.65 -15.06 -0.15 -7.36 16 4 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 5 C 0.00 0.03 5.10 -17.43 -0.09 -0.05 16 6 N -0.91 -27.30 10.71 55.49 0.59 -26.71 16 7 Si 0.91 22.19 29.57 -169.99 -5.03 17.17 16 8 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.14 3.21 5.97 -4.05 -0.02 3.18 16 12 C 0.09 1.82 5.73 -4.04 -0.02 1.79 16 13 N -0.61 -9.57 2.87 -181.58 -0.52 -10.09 16 14 C 0.07 0.78 10.24 59.85 0.61 1.39 16 15 C 0.49 8.41 7.74 -10.99 -0.09 8.32 16 16 O -0.52 -11.49 16.01 5.55 0.09 -11.40 16 17 C 0.15 1.89 5.43 -5.19 -0.03 1.86 16 18 N -0.44 -6.62 3.13 -66.32 -0.21 -6.82 16 19 N -0.26 -3.66 12.51 33.14 0.41 -3.24 16 20 C 0.28 2.97 7.73 -153.66 -1.19 1.79 16 21 N -0.56 -6.59 3.14 -117.44 -0.37 -6.95 16 22 C 0.66 10.45 8.65 -86.78 -0.75 9.70 16 23 O -0.55 -10.38 17.84 5.08 0.09 -10.29 16 24 C 0.13 0.99 6.87 -3.78 -0.03 0.97 16 25 C -0.14 -0.59 5.94 -26.46 -0.16 -0.75 16 26 C -0.12 -0.41 5.96 -26.36 -0.16 -0.57 16 27 C -0.04 -0.23 6.32 -27.44 -0.17 -0.40 16 28 H 0.03 0.89 7.34 -51.93 -0.38 0.51 16 29 H 0.04 1.14 7.34 -51.93 -0.38 0.76 16 30 H 0.00 0.01 8.03 -51.93 -0.42 -0.41 16 31 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 34 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 35 H 0.07 1.65 7.42 -51.93 -0.39 1.27 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 38 H 0.07 0.50 6.44 -51.93 -0.33 0.17 16 39 H 0.12 1.20 7.40 -51.93 -0.38 0.81 16 40 H 0.12 1.31 8.09 -51.93 -0.42 0.89 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 44 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 45 H 0.07 0.23 8.11 -51.93 -0.42 -0.19 16 46 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 47 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 394.03 15.07 5.94 5.94 Total: -1.00 -40.13 394.03 -8.95 -49.08 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -7.73 Total: -4.92 kcal Atomic # 6 Polarization: 26.46 SS G_CDS: -1.70 Total: 24.76 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -0.62 Total: -70.33 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.18 Total: -21.70 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -40.13 -8.95 -49.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753874379.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.007 kcal (2) G-P(sol) polarization free energy of solvation -40.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds