Wall clock time and date at job start Tue Mar 31 2020 21:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36939 * 120.00012 * 2 1 4 4 H 1.07991 * 120.00160 * 203.04784 * 3 2 1 5 5 C 1.38820 * 119.99764 * 23.05236 * 3 2 1 6 6 N 1.31614 * 120.00139 * 12.92052 * 5 3 2 7 7 Si 1.86793 * 119.99615 * 192.92580 * 5 3 2 8 8 H 1.48496 * 109.47317 * 90.00150 * 7 5 3 9 9 H 1.48503 * 109.47152 * 209.99632 * 7 5 3 10 10 H 1.48506 * 109.47422 * 329.99736 * 7 5 3 11 11 C 1.46494 * 119.99781 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47498 * 89.99892 * 11 2 1 13 13 N 1.46503 * 109.47535 * 179.97438 * 12 11 2 14 14 C 1.46499 * 119.99817 * 270.00246 * 13 12 11 15 15 C 1.34772 * 120.00203 * 89.99516 * 13 12 11 16 16 O 1.21293 * 119.99927 * 0.02562 * 15 13 12 17 17 C 1.50699 * 120.00278 * 180.02562 * 15 13 12 18 18 N 1.46503 * 109.47276 * 179.97438 * 17 15 13 19 19 N 1.40312 * 126.32754 * 270.02843 * 18 17 15 20 20 C 1.28879 * 108.11768 * 180.35511 * 19 18 17 21 21 N 1.38112 * 108.89612 * 0.79805 * 20 19 18 22 22 C 1.34310 * 108.29603 * 358.28857 * 21 20 19 23 23 O 1.21819 * 126.32458 * 181.84620 * 22 21 20 24 24 C 1.46717 * 124.21542 * 177.65340 * 21 20 19 25 25 C 1.53284 * 108.66144 * 19.13219 * 24 21 20 26 26 C 1.53240 * 109.34974 * 308.25530 * 25 24 21 27 27 C 1.51113 * 127.45544 * 180.92229 * 20 19 18 28 28 H 1.08997 * 109.46556 * 275.11993 * 1 2 3 29 29 H 1.08993 * 109.46947 * 35.11663 * 1 2 3 30 30 H 1.08992 * 109.46750 * 155.12074 * 1 2 3 31 31 H 0.96997 * 120.00115 * 180.02562 * 6 5 3 32 32 H 1.09003 * 109.47207 * 329.99267 * 11 2 1 33 33 H 1.09007 * 109.46885 * 209.99791 * 11 2 1 34 34 H 1.09003 * 109.47401 * 59.99494 * 12 11 2 35 35 H 1.09000 * 109.47300 * 299.99634 * 12 11 2 36 36 H 1.08997 * 109.47097 * 269.99002 * 14 13 12 37 37 H 1.08995 * 109.47531 * 29.99405 * 14 13 12 38 38 H 1.09001 * 109.47030 * 149.99745 * 14 13 12 39 39 H 1.09004 * 109.46988 * 60.00230 * 17 15 13 40 40 H 1.08993 * 109.46988 * 300.00114 * 17 15 13 41 41 H 1.08998 * 109.59816 * 259.38174 * 24 21 20 42 42 H 1.08996 * 109.60776 * 138.88900 * 24 21 20 43 43 H 1.08995 * 109.49186 * 188.28337 * 25 24 21 44 44 H 1.08998 * 109.48947 * 68.21496 * 25 24 21 45 45 H 1.08996 * 109.54573 * 310.91194 * 26 25 24 46 46 H 1.09000 * 109.62437 * 190.67501 * 26 25 24 47 47 H 1.08997 * 109.75353 * 78.15845 * 27 20 19 48 48 H 1.08996 * 109.75686 * 317.46919 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5388 2.3401 0.4708 6 7 0.4119 2.2597 1.1459 7 14 2.3160 4.0073 0.1458 8 1 1.7988 4.5535 -1.1346 9 1 1.9760 4.9363 1.2534 10 1 3.7910 3.8577 0.0603 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 7 3.1855 -2.9783 -1.4437 14 6 4.6505 -2.9777 -1.4439 15 6 2.5121 -4.1457 -1.4440 16 8 1.2992 -4.1462 -1.4442 17 6 3.2661 -5.4505 -1.4440 18 7 2.3145 -6.5645 -1.4436 19 7 1.7745 -7.1960 -0.3130 20 6 0.9851 -8.1319 -0.7155 21 7 0.9924 -8.1602 -2.0963 22 6 1.7931 -7.1747 -2.5340 23 8 2.0107 -6.8846 -3.6969 24 6 0.2476 -9.1313 -2.9055 25 6 -0.8581 -9.7457 -2.0397 26 6 -0.2499 -10.2653 -0.7327 27 6 0.1621 -9.0698 0.1369 28 1 -0.3632 0.0917 1.0236 29 1 -0.3633 0.8406 -0.5911 30 1 -0.3632 -0.9322 -0.4323 31 1 -0.0152 3.0662 1.4746 32 1 1.6084 -2.0286 0.5130 33 1 3.1500 -1.1386 0.5133 34 1 3.0416 -0.9500 -1.9568 35 1 1.5001 -1.8400 -1.9571 36 1 5.0137 -2.9773 -2.4716 37 1 5.0136 -2.0878 -0.9299 38 1 5.0142 -3.8677 -0.9304 39 1 3.8926 -5.5081 -0.5538 40 1 3.8929 -5.5079 -2.3338 41 1 0.9224 -9.9158 -3.2480 42 1 -0.1972 -8.6277 -3.7637 43 1 -1.3246 -10.5711 -2.5773 44 1 -1.6081 -8.9872 -1.8155 45 1 0.6266 -10.8739 -0.9550 46 1 -0.9863 -10.8671 -0.2001 47 1 -0.7271 -8.5539 0.4991 48 1 0.7564 -9.4167 0.9822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753874379.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:42 Heat of formation + Delta-G solvation = 14.670602 kcal Electronic energy + Delta-G solvation = -29715.471381 eV Core-core repulsion = 25614.635085 eV Total energy + Delta-G solvation = -4100.836296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.63473 -41.00344 -38.83254 -38.02560 -37.67793 -36.47537 -34.54586 -33.73791 -33.35042 -30.83563 -29.80145 -28.80799 -28.04189 -27.43780 -25.77285 -24.72833 -23.65138 -22.95957 -22.36546 -20.68791 -20.42331 -18.85482 -18.61266 -18.33745 -17.76026 -17.31989 -17.16003 -16.94417 -16.39631 -16.38308 -15.61845 -15.57668 -15.30342 -15.18892 -15.10654 -14.76733 -14.35691 -14.25294 -14.08272 -13.98633 -13.95194 -13.45835 -13.18561 -13.16065 -13.04594 -12.91472 -12.82109 -12.75987 -12.49986 -12.17930 -12.08617 -11.93703 -11.88827 -11.85454 -11.68197 -11.46567 -11.35393 -10.79181 -10.69532 -9.86048 -9.66201 -8.81108 -7.84899 -5.37379 0.57630 0.93117 1.44068 1.45907 1.46829 1.49048 1.57502 1.88377 2.09488 2.50746 3.19259 3.28557 3.37459 3.57223 3.71604 3.74459 3.84134 3.90625 4.01133 4.08794 4.32281 4.33244 4.38074 4.38357 4.43650 4.54451 4.59899 4.71338 4.73784 4.77460 4.84369 4.88656 4.89185 4.93771 5.01057 5.05449 5.06321 5.17700 5.22845 5.34881 5.47201 5.55395 5.59622 5.62127 6.27820 6.31033 6.53611 6.84389 7.03430 7.09030 7.78246 8.26895 9.19277 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.002314 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.394263 B =12097.436600 C =12732.704868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.617 5.617 3 C -0.265 4.265 4 H 0.082 0.918 5 C -0.058 4.058 6 N -0.943 5.943 7 Si 0.977 3.023 8 H -0.288 1.288 9 H -0.296 1.296 10 H -0.261 1.261 11 C 0.151 3.849 12 C 0.113 3.887 13 N -0.606 5.606 14 C 0.064 3.936 15 C 0.485 3.515 16 O -0.584 6.584 17 C 0.148 3.852 18 N -0.448 5.448 19 N -0.301 5.301 20 C 0.285 3.715 21 N -0.554 5.554 22 C 0.638 3.362 23 O -0.597 6.597 24 C 0.118 3.882 25 C -0.132 4.132 26 C -0.116 4.116 27 C -0.042 4.042 28 H 0.007 0.993 29 H 0.020 0.980 30 H 0.012 0.988 31 H 0.249 0.751 32 H 0.021 0.979 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.160 0.840 40 H 0.144 0.856 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.123 0.877 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.118 0.882 47 H 0.111 0.889 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 -30.983 -3.799 31.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.341 5.341 3 C -0.395 4.395 4 H 0.099 0.901 5 C -0.253 4.253 6 N -0.589 5.589 7 Si 0.805 3.195 8 H -0.215 1.215 9 H -0.222 1.222 10 H -0.185 1.185 11 C 0.024 3.976 12 C -0.013 4.013 13 N -0.339 5.339 14 C -0.077 4.077 15 C 0.272 3.728 16 O -0.464 6.464 17 C 0.024 3.976 18 N -0.266 5.266 19 N -0.123 5.123 20 C 0.007 3.993 21 N -0.282 5.282 22 C 0.337 3.663 23 O -0.474 6.474 24 C -0.002 4.002 25 C -0.169 4.169 26 C -0.153 4.153 27 C -0.081 4.081 28 H 0.025 0.975 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.121 0.879 39 H 0.177 0.823 40 H 0.161 0.839 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.141 0.859 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.136 0.864 47 H 0.129 0.871 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.081 -30.123 -3.773 30.780 hybrid contribution -0.369 1.471 -0.897 1.762 sum 4.713 -28.651 -4.670 29.410 Atomic orbital electron populations 1.20482 0.83278 0.95137 0.97598 1.44088 1.01904 1.01778 1.86343 1.19600 0.98797 0.86173 1.34889 0.90076 1.25956 0.98653 1.02427 0.98247 1.70264 1.21061 1.27801 1.39812 0.85114 0.78695 0.79042 0.76656 1.21459 1.22236 1.18486 1.21000 0.95740 0.86460 0.94384 1.21968 0.96143 0.83935 0.99251 1.47997 1.09059 1.04782 1.72059 1.22249 0.76082 1.05474 1.03861 1.21620 0.88198 0.86938 0.76006 1.90705 1.16425 1.87822 1.51402 1.21518 0.88418 0.78820 1.08885 1.48616 1.43123 1.31778 1.03112 1.76759 1.15382 1.10171 1.09955 1.25361 0.95577 0.95620 0.82758 1.46338 1.43518 1.30437 1.07922 1.16902 0.82075 0.82021 0.85315 1.91010 1.68349 1.71423 1.16667 1.22201 0.94512 0.89619 0.93832 1.22037 0.95921 1.02130 0.96826 1.21753 1.02997 0.95909 0.94677 1.20891 0.98181 0.92573 0.96477 0.97492 0.96157 0.96947 0.94210 0.96064 0.92347 0.89661 0.93932 0.90384 0.89810 0.87879 0.82266 0.83882 0.88267 0.90510 0.85896 0.91297 0.89998 0.86377 0.87071 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.07 8.98 127.77 1.15 11.22 16 2 N -0.62 -33.45 2.92 -726.95 -2.12 -35.58 16 3 C -0.26 -14.85 9.65 84.04 0.81 -14.04 16 4 H 0.08 4.24 7.86 -2.92 -0.02 4.22 16 5 C -0.06 -3.34 5.10 84.86 0.43 -2.91 16 6 N -0.94 -58.11 10.71 21.65 0.23 -57.88 16 7 Si 0.98 45.62 29.57 68.60 2.03 47.64 16 8 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 9 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 11 C 0.15 6.79 5.97 86.38 0.52 7.31 16 12 C 0.11 4.39 5.73 86.38 0.49 4.88 16 13 N -0.61 -18.52 2.87 -846.77 -2.43 -20.95 16 14 C 0.06 1.16 10.24 127.77 1.31 2.47 16 15 C 0.49 16.62 7.74 87.66 0.68 17.30 16 16 O -0.58 -26.74 16.01 -3.07 -0.05 -26.79 16 17 C 0.15 3.67 5.43 85.63 0.46 4.14 16 18 N -0.45 -13.50 3.13 -481.54 -1.51 -15.00 16 19 N -0.30 -8.20 12.51 -49.05 -0.61 -8.81 16 20 C 0.28 5.91 7.73 137.72 1.06 6.98 16 21 N -0.55 -13.04 3.14 -643.90 -2.02 -15.06 16 22 C 0.64 20.74 8.65 179.00 1.55 22.29 16 23 O -0.60 -23.21 17.84 -4.73 -0.08 -23.30 16 24 C 0.12 1.70 6.87 86.43 0.59 2.29 16 25 C -0.13 -0.81 5.94 30.77 0.18 -0.63 16 26 C -0.12 -0.37 5.96 30.83 0.18 -0.18 16 27 C -0.04 -0.37 6.32 30.14 0.19 -0.18 16 28 H 0.01 0.41 7.34 -2.39 -0.02 0.39 16 29 H 0.02 1.17 7.34 -2.39 -0.02 1.15 16 30 H 0.01 0.63 8.03 -2.39 -0.02 0.61 16 31 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 33 H 0.06 2.45 8.04 -2.38 -0.02 2.43 16 34 H 0.09 3.15 8.07 -2.39 -0.02 3.13 16 35 H 0.04 1.94 7.42 -2.39 -0.02 1.92 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.51 8.07 -2.39 -0.02 1.49 16 38 H 0.10 1.14 6.44 -2.39 -0.02 1.13 16 39 H 0.16 2.68 7.40 -2.38 -0.02 2.66 16 40 H 0.14 2.86 8.09 -2.39 -0.02 2.84 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 43 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.07 0.60 8.10 -2.39 -0.02 0.58 16 45 H 0.08 0.20 8.11 -2.39 -0.02 0.18 16 46 H 0.12 -0.22 8.14 -2.39 -0.02 -0.23 16 47 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -92.62 394.03 4.00 -88.62 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 0.95 Total: 6.17 kcal Atomic # 6 Polarization: 51.31 SS G_CDS: 9.62 Total: 60.93 kcal Atomic # 7 Polarization: -144.81 SS G_CDS: -8.47 Total: -153.27 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -0.13 Total: -50.08 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -92.62 4.00 -88.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753874379.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.287 kcal (2) G-P(sol) polarization free energy of solvation -92.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds