Wall clock time and date at job start Tue Mar 31 2020 20:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47215 * 2 1 4 4 C 1.46503 * 119.99842 * 263.68674 * 3 2 1 5 5 C 1.52999 * 109.47052 * 269.99886 * 4 3 2 6 6 N 1.46493 * 109.47595 * 179.97438 * 5 4 3 7 7 C 1.36935 * 120.00641 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99460 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00237 * 179.97438 * 7 6 5 10 10 N 1.31619 * 119.99968 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99901 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46871 * 90.00339 * 11 9 7 13 13 H 1.48494 * 109.46695 * 210.00188 * 11 9 7 14 14 H 1.48503 * 109.46837 * 329.99968 * 11 9 7 15 15 C 1.34777 * 120.00101 * 83.68273 * 3 2 1 16 16 O 1.21600 * 119.99805 * 184.35800 * 15 3 2 17 17 C 1.47522 * 120.00199 * 4.35923 * 15 3 2 18 18 C 1.36588 * 125.77147 * 173.98231 * 17 15 3 19 19 N 1.34815 * 106.83979 * 180.17993 * 18 17 15 20 20 C 1.46498 * 126.59531 * 179.85215 * 19 18 17 21 21 C 1.53178 * 109.54274 * 274.71352 * 20 19 18 22 22 C 1.53093 * 109.16415 * 176.85020 * 21 20 19 23 23 O 1.42912 * 109.41274 * 302.38626 * 22 21 20 24 24 C 1.42899 * 114.09282 * 61.16301 * 23 22 21 25 25 C 1.53093 * 109.41690 * 298.83685 * 24 23 22 26 26 N 1.40209 * 106.80912 * 359.58890 * 19 18 17 27 27 N 1.28757 * 108.36717 * 0.26238 * 26 19 18 28 28 H 1.09002 * 109.46809 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47492 * 300.00402 * 1 2 3 30 30 H 1.09004 * 109.47059 * 60.00744 * 1 2 3 31 31 H 1.08997 * 109.47492 * 239.99598 * 2 1 3 32 32 H 1.09007 * 109.47143 * 119.99788 * 2 1 3 33 33 H 1.08998 * 109.47063 * 29.99222 * 4 3 2 34 34 H 1.08992 * 109.47135 * 150.00002 * 4 3 2 35 35 H 1.09006 * 109.47050 * 300.00349 * 5 4 3 36 36 H 1.09004 * 109.47374 * 59.99472 * 5 4 3 37 37 H 0.97002 * 119.99422 * 0.02562 * 6 5 4 38 38 H 0.96992 * 119.99802 * 179.97438 * 10 9 7 39 39 H 1.08001 * 126.58361 * 0.03402 * 18 17 15 40 40 H 1.09002 * 109.54546 * 154.53451 * 20 19 18 41 41 H 1.09001 * 109.52439 * 56.93971 * 21 20 19 42 42 H 1.09007 * 109.57724 * 296.78102 * 21 20 19 43 43 H 1.09004 * 109.48218 * 182.41073 * 22 21 20 44 44 H 1.09001 * 109.48268 * 62.37106 * 22 21 20 45 45 H 1.09000 * 109.48704 * 58.82141 * 24 23 22 46 46 H 1.09005 * 109.47744 * 178.86091 * 24 23 22 47 47 H 1.09010 * 109.52294 * 297.71116 * 25 24 23 48 48 H 1.08990 * 109.57851 * 177.54737 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3940 2.0253 -1.2611 5 6 3.8766 1.7716 -1.5414 6 7 4.2522 2.4151 -2.8027 7 6 5.5392 2.3235 -3.2615 8 1 6.2772 1.7765 -2.6936 9 6 5.8950 2.9329 -4.4569 10 7 4.9954 3.5990 -5.1493 11 14 7.6505 2.8073 -5.0830 12 1 7.7842 1.6046 -5.9437 13 1 7.9822 4.0204 -5.8726 14 1 8.5804 2.6972 -3.9304 15 6 2.1219 2.0594 1.1601 16 8 2.4512 3.2299 1.1527 17 6 1.8357 1.3817 2.4388 18 6 2.0137 1.9162 3.6831 19 7 1.6387 0.9732 4.5706 20 6 1.6578 1.0912 6.0307 21 6 3.0509 0.7309 6.5557 22 6 3.0839 0.9327 8.0729 23 8 2.7397 2.2854 8.3798 24 6 1.4291 2.6646 7.9547 25 6 1.3297 2.5324 6.4327 26 7 1.2214 -0.1400 3.8273 27 7 1.3509 0.1357 2.5763 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.7950 1.6122 -2.0726 34 1 2.2165 3.0982 -1.1881 35 1 4.4757 2.1846 -0.7298 36 1 4.0542 0.6986 -1.6143 37 1 3.5894 2.9066 -3.3126 38 1 5.2441 4.0251 -5.9843 39 1 2.3857 2.9039 3.9121 40 1 0.9197 0.4142 6.4609 41 1 3.7948 1.3747 6.0864 42 1 3.2712 -0.3108 6.3220 43 1 4.0853 0.7188 8.4465 44 1 2.3682 0.2594 8.5448 45 1 0.6918 2.0141 8.4250 46 1 1.2385 3.6985 8.2429 47 1 2.0389 3.2126 5.9608 48 1 0.3183 2.7793 6.1100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754075542.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:36 Heat of formation + Delta-G solvation = 41.216934 kcal Electronic energy + Delta-G solvation = -29273.643083 eV Core-core repulsion = 25173.957922 eV Total energy + Delta-G solvation = -4099.685161 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.55633 -40.07803 -39.38585 -36.18599 -35.88027 -34.49431 -32.11169 -31.97720 -31.72229 -30.88532 -30.14993 -27.66567 -26.07981 -24.60078 -24.18264 -23.49459 -22.81554 -22.54727 -21.40505 -20.70473 -19.58631 -17.92212 -17.10214 -16.86445 -16.83507 -16.40316 -16.16560 -15.76855 -15.45022 -15.21137 -15.02848 -14.53587 -14.37897 -14.21785 -13.85170 -13.78576 -13.45743 -13.20928 -13.13635 -12.87141 -12.59971 -12.38707 -12.29615 -12.17711 -11.88573 -11.84498 -11.57689 -11.20865 -11.16125 -10.94105 -10.88059 -10.74274 -10.60668 -10.48069 -10.32345 -10.07349 -9.88683 -9.66484 -9.45666 -8.81906 -8.40575 -6.87405 -5.70914 -2.99770 0.90157 1.61667 1.63144 3.07297 3.15989 3.34355 3.48072 3.52761 3.55050 3.59091 3.82692 3.99347 4.09029 4.15588 4.37047 4.40727 4.53229 4.65924 4.67487 4.76019 4.81041 4.91634 4.98407 5.04333 5.15478 5.20576 5.26239 5.34543 5.42681 5.47436 5.58580 5.62971 5.75594 5.86178 5.93032 6.05476 6.09679 6.14301 6.25082 6.39138 6.45437 6.67333 6.82070 6.99102 7.54114 7.75160 7.75836 8.29127 8.47803 9.58561 10.15257 10.50613 11.52084 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.002218 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.741954 B =12623.245128 C =13595.525591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.097 3.903 3 N -0.590 5.590 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.598 3.402 16 O -0.534 6.534 17 C -0.090 4.090 18 C 0.093 3.907 19 N -0.358 5.358 20 C 0.152 3.848 21 C -0.170 4.170 22 C 0.066 3.934 23 O -0.378 6.378 24 C 0.067 3.933 25 C -0.172 4.172 26 N -0.073 5.073 27 N -0.197 5.197 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.022 0.978 36 H 0.019 0.981 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.201 0.799 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.107 0.893 47 H 0.089 0.911 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.081 -7.143 29.817 32.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.026 4.026 3 N -0.322 5.322 4 C -0.014 4.014 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.367 4.367 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.383 3.617 16 O -0.410 6.410 17 C -0.229 4.229 18 C -0.064 4.064 19 N -0.143 5.143 20 C 0.050 3.950 21 C -0.208 4.208 22 C -0.011 4.011 23 O -0.296 6.296 24 C -0.010 4.010 25 C -0.211 4.211 26 N -0.052 5.052 27 N -0.071 5.071 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.040 0.960 36 H 0.037 0.963 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.218 0.782 40 H 0.132 0.868 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.125 0.875 47 H 0.108 0.892 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.163 -7.869 29.972 33.290 hybrid contribution 0.919 0.802 -0.774 1.445 sum -11.244 -7.067 29.199 32.077 Atomic orbital electron populations 1.22042 0.95894 1.01916 1.01568 1.21940 0.94595 0.81855 1.04252 1.47735 1.63433 1.14572 1.06427 1.21757 0.97122 0.99214 0.83348 1.20916 0.91766 0.95912 0.89970 1.42207 1.10119 1.63486 1.21666 1.19208 0.87032 1.27461 1.03019 0.91223 1.24748 0.97878 1.00675 0.97792 1.69661 1.32778 1.39406 1.16394 0.86161 0.84368 0.76976 0.78534 1.21736 1.21749 1.20786 1.16815 0.77608 0.85405 0.81878 1.90836 1.48471 1.15195 1.86516 1.21533 1.13135 0.93201 0.95061 1.23267 0.97615 0.96800 0.88679 1.50602 1.44186 1.11620 1.07851 1.21622 0.99938 0.99480 0.73937 1.22719 0.95736 1.04343 0.98048 1.22596 1.02363 0.83651 0.92540 1.88020 1.32701 1.28730 1.80135 1.22567 0.84946 1.02230 0.91287 1.22730 1.04549 0.94718 0.99115 1.81992 1.20220 1.06440 0.96511 1.74774 1.10426 1.12443 1.09424 0.91720 0.92832 0.92903 0.90292 0.88037 0.90224 0.89508 0.96009 0.96295 0.78238 0.93524 0.78182 0.86751 0.89642 0.89231 0.87609 0.92324 0.92325 0.87476 0.89246 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.73 37.16 0.36 -1.46 16 2 C 0.10 1.28 5.70 -4.04 -0.02 1.26 16 3 N -0.59 -9.43 2.49 -174.92 -0.44 -9.86 16 4 C 0.11 1.97 5.53 -4.04 -0.02 1.94 16 5 C 0.14 3.14 6.58 -4.05 -0.03 3.12 16 6 N -0.73 -19.52 5.60 -59.91 -0.34 -19.86 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 10 N -0.93 -28.98 13.06 55.49 0.72 -28.26 16 11 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 C 0.60 9.87 7.62 -12.48 -0.10 9.77 16 16 O -0.53 -10.38 16.43 5.28 0.09 -10.30 16 17 C -0.09 -1.22 6.54 -83.55 -0.55 -1.76 16 18 C 0.09 0.96 10.40 -16.84 -0.18 0.79 16 19 N -0.36 -3.19 3.55 -54.38 -0.19 -3.39 16 20 C 0.15 0.82 3.32 -67.74 -0.23 0.59 16 21 C -0.17 -0.83 5.75 -26.59 -0.15 -0.99 16 22 C 0.07 0.26 6.84 37.21 0.25 0.51 16 23 O -0.38 -2.18 10.77 -35.23 -0.38 -2.56 16 24 C 0.07 0.24 6.84 37.21 0.25 0.49 16 25 C -0.17 -0.70 5.13 -26.59 -0.14 -0.84 16 26 N -0.07 -0.84 13.78 60.35 0.83 -0.01 16 27 N -0.20 -2.55 7.59 32.84 0.25 -2.30 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.67 7.10 -51.93 -0.37 0.30 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.01 8.02 -51.93 -0.42 0.59 16 32 H 0.10 1.35 5.26 -51.93 -0.27 1.08 16 33 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.09 1.71 7.36 -51.93 -0.38 1.33 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.38 10.62 7.67 -40.82 -0.31 10.31 16 38 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.20 1.65 7.25 -52.49 -0.38 1.27 16 40 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 46 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.09 0.41 7.07 -51.92 -0.37 0.04 16 48 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 391.28 15.07 5.90 5.90 Total: -1.00 -35.85 391.28 -6.90 -42.75 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.54 Total: 4.03 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.78 Total: 5.82 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: 0.84 Total: -63.69 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.29 Total: -12.86 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.85 -6.90 -42.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754075542.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.969 kcal (2) G-P(sol) polarization free energy of solvation -35.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds