Wall clock time and date at job start Tue Mar 31 2020 20:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47215 * 2 1 4 4 C 1.46503 * 119.99842 * 263.68674 * 3 2 1 5 5 C 1.52999 * 109.47052 * 269.99886 * 4 3 2 6 6 N 1.46493 * 109.47595 * 179.97438 * 5 4 3 7 7 C 1.36935 * 120.00641 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99460 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00237 * 179.97438 * 7 6 5 10 10 N 1.31619 * 119.99968 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99901 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46871 * 90.00339 * 11 9 7 13 13 H 1.48494 * 109.46695 * 210.00188 * 11 9 7 14 14 H 1.48503 * 109.46837 * 329.99968 * 11 9 7 15 15 C 1.34777 * 120.00101 * 83.68273 * 3 2 1 16 16 O 1.21600 * 119.99805 * 184.35800 * 15 3 2 17 17 C 1.47522 * 120.00199 * 4.35923 * 15 3 2 18 18 C 1.36588 * 125.77147 * 173.98231 * 17 15 3 19 19 N 1.34815 * 106.83979 * 180.17993 * 18 17 15 20 20 C 1.46498 * 126.59531 * 179.85215 * 19 18 17 21 21 C 1.53178 * 109.54274 * 274.71352 * 20 19 18 22 22 C 1.53093 * 109.16415 * 176.85020 * 21 20 19 23 23 O 1.42912 * 109.41274 * 302.38626 * 22 21 20 24 24 C 1.42899 * 114.09282 * 61.16301 * 23 22 21 25 25 C 1.53093 * 109.41690 * 298.83685 * 24 23 22 26 26 N 1.40209 * 106.80912 * 359.58890 * 19 18 17 27 27 N 1.28757 * 108.36717 * 0.26238 * 26 19 18 28 28 H 1.09002 * 109.46809 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47492 * 300.00402 * 1 2 3 30 30 H 1.09004 * 109.47059 * 60.00744 * 1 2 3 31 31 H 1.08997 * 109.47492 * 239.99598 * 2 1 3 32 32 H 1.09007 * 109.47143 * 119.99788 * 2 1 3 33 33 H 1.08998 * 109.47063 * 29.99222 * 4 3 2 34 34 H 1.08992 * 109.47135 * 150.00002 * 4 3 2 35 35 H 1.09006 * 109.47050 * 300.00349 * 5 4 3 36 36 H 1.09004 * 109.47374 * 59.99472 * 5 4 3 37 37 H 0.97002 * 119.99422 * 0.02562 * 6 5 4 38 38 H 0.96992 * 119.99802 * 179.97438 * 10 9 7 39 39 H 1.08001 * 126.58361 * 0.03402 * 18 17 15 40 40 H 1.09002 * 109.54546 * 154.53451 * 20 19 18 41 41 H 1.09001 * 109.52439 * 56.93971 * 21 20 19 42 42 H 1.09007 * 109.57724 * 296.78102 * 21 20 19 43 43 H 1.09004 * 109.48218 * 182.41073 * 22 21 20 44 44 H 1.09001 * 109.48268 * 62.37106 * 22 21 20 45 45 H 1.09000 * 109.48704 * 58.82141 * 24 23 22 46 46 H 1.09005 * 109.47744 * 178.86091 * 24 23 22 47 47 H 1.09010 * 109.52294 * 297.71116 * 25 24 23 48 48 H 1.08990 * 109.57851 * 177.54737 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3940 2.0253 -1.2611 5 6 3.8766 1.7716 -1.5414 6 7 4.2522 2.4151 -2.8027 7 6 5.5392 2.3235 -3.2615 8 1 6.2772 1.7765 -2.6936 9 6 5.8950 2.9329 -4.4569 10 7 4.9954 3.5990 -5.1493 11 14 7.6505 2.8073 -5.0830 12 1 7.7842 1.6046 -5.9437 13 1 7.9822 4.0204 -5.8726 14 1 8.5804 2.6972 -3.9304 15 6 2.1219 2.0594 1.1601 16 8 2.4512 3.2299 1.1527 17 6 1.8357 1.3817 2.4388 18 6 2.0137 1.9162 3.6831 19 7 1.6387 0.9732 4.5706 20 6 1.6578 1.0912 6.0307 21 6 3.0509 0.7309 6.5557 22 6 3.0839 0.9327 8.0729 23 8 2.7397 2.2854 8.3798 24 6 1.4291 2.6646 7.9547 25 6 1.3297 2.5324 6.4327 26 7 1.2214 -0.1400 3.8273 27 7 1.3509 0.1357 2.5763 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.7950 1.6122 -2.0726 34 1 2.2165 3.0982 -1.1881 35 1 4.4757 2.1846 -0.7298 36 1 4.0542 0.6986 -1.6143 37 1 3.5894 2.9066 -3.3126 38 1 5.2441 4.0251 -5.9843 39 1 2.3857 2.9039 3.9121 40 1 0.9197 0.4142 6.4609 41 1 3.7948 1.3747 6.0864 42 1 3.2712 -0.3108 6.3220 43 1 4.0853 0.7188 8.4465 44 1 2.3682 0.2594 8.5448 45 1 0.6918 2.0141 8.4250 46 1 1.2385 3.6985 8.2429 47 1 2.0389 3.2126 5.9608 48 1 0.3183 2.7793 6.1100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754075542.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:33 Heat of formation + Delta-G solvation = 16.028695 kcal Electronic energy + Delta-G solvation = -29274.735327 eV Core-core repulsion = 25173.957922 eV Total energy + Delta-G solvation = -4100.777405 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.43482 -40.87184 -40.27055 -37.59211 -36.65482 -36.21412 -33.68767 -32.69978 -32.27451 -31.98534 -31.50930 -29.26453 -26.78941 -25.90742 -24.95716 -24.64430 -23.95937 -23.42007 -22.94199 -21.21514 -20.71205 -19.27027 -18.73051 -17.68343 -17.51579 -17.35412 -17.03050 -16.69329 -16.48018 -16.09947 -15.92354 -15.78105 -15.41567 -15.23199 -15.10266 -14.90374 -14.78784 -14.73261 -14.60037 -13.65565 -13.49841 -13.40727 -13.07463 -12.93474 -12.84138 -12.78336 -12.75006 -12.54403 -12.49441 -12.33286 -12.24601 -12.13376 -11.88053 -11.72848 -11.48288 -11.25773 -11.09945 -10.97777 -10.74286 -10.41282 -9.73974 -9.06572 -7.97311 -5.28185 0.04970 0.56001 0.92080 1.46343 1.49268 1.57719 1.83748 2.14954 2.55829 2.87909 3.01078 3.14007 3.35636 3.43134 3.48982 3.74592 3.79496 3.84663 4.01294 4.05521 4.07354 4.14833 4.20025 4.21668 4.24726 4.41290 4.48912 4.49531 4.56159 4.56398 4.62629 4.68518 4.76488 4.88031 4.88480 4.95015 5.03789 5.04671 5.08515 5.14431 5.35163 5.42424 5.43877 5.55666 6.17780 6.23888 6.29096 6.78813 7.04366 7.30226 8.01252 8.27715 9.26026 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.002218 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.741954 B =12623.245128 C =13595.525591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.096 3.904 3 N -0.591 5.591 4 C 0.123 3.877 5 C 0.150 3.850 6 N -0.741 5.741 7 C -0.250 4.250 8 H 0.072 0.928 9 C -0.074 4.074 10 N -0.967 5.967 11 Si 0.979 3.021 12 H -0.282 1.282 13 H -0.292 1.292 14 H -0.272 1.272 15 C 0.595 3.405 16 O -0.573 6.573 17 C -0.115 4.115 18 C 0.107 3.893 19 N -0.341 5.341 20 C 0.145 3.855 21 C -0.165 4.165 22 C 0.067 3.933 23 O -0.400 6.400 24 C 0.066 3.934 25 C -0.168 4.168 26 N -0.081 5.081 27 N -0.205 5.205 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.003 0.997 36 H 0.028 0.972 37 H 0.377 0.623 38 H 0.254 0.746 39 H 0.220 0.780 40 H 0.132 0.868 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.116 0.884 47 H 0.083 0.917 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.295 -8.300 31.623 34.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 N -0.321 5.321 4 C 0.000 4.000 5 C 0.022 3.978 6 N -0.385 5.385 7 C -0.382 4.382 8 H 0.090 0.910 9 C -0.266 4.266 10 N -0.617 5.617 11 Si 0.807 3.193 12 H -0.209 1.209 13 H -0.218 1.218 14 H -0.197 1.197 15 C 0.382 3.618 16 O -0.452 6.452 17 C -0.254 4.254 18 C -0.051 4.051 19 N -0.126 5.126 20 C 0.045 3.955 21 C -0.204 4.204 22 C -0.010 4.010 23 O -0.319 6.319 24 C -0.011 4.011 25 C -0.207 4.207 26 N -0.060 5.060 27 N -0.079 5.079 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.021 0.979 36 H 0.045 0.955 37 H 0.209 0.791 38 H 0.062 0.938 39 H 0.237 0.763 40 H 0.150 0.850 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.130 0.870 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.134 0.866 47 H 0.102 0.898 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.397 -9.086 31.837 35.353 hybrid contribution 0.959 1.133 -1.181 1.896 sum -11.438 -7.953 30.657 33.674 Atomic orbital electron populations 1.21961 0.94484 1.03062 1.00999 1.22111 0.95693 0.80188 1.04641 1.47800 1.63244 1.15547 1.05547 1.21410 0.94870 0.98597 0.85124 1.20935 0.93932 0.95516 0.87405 1.42369 1.09407 1.63766 1.22953 1.19576 0.88123 1.27231 1.03269 0.90961 1.25635 1.02201 1.00648 0.98119 1.69817 1.34814 1.40385 1.16703 0.85071 0.79368 0.76871 0.78006 1.20880 1.21841 1.19688 1.17212 0.76673 0.85073 0.82849 1.90803 1.50310 1.16862 1.87205 1.21210 1.15638 0.94018 0.94559 1.23507 0.96153 0.97441 0.87961 1.50849 1.42422 1.10362 1.08953 1.22043 1.00832 1.00964 0.71682 1.22684 0.94898 1.03907 0.98879 1.22679 1.03354 0.83383 0.91578 1.87996 1.33892 1.29625 1.80338 1.22704 0.84510 1.03266 0.90605 1.22732 1.04776 0.93452 0.99714 1.81912 1.20476 1.07362 0.96261 1.74724 1.10731 1.12209 1.10196 0.89673 0.93704 0.93087 0.89699 0.87797 0.88589 0.91309 0.97923 0.95458 0.79135 0.93763 0.76325 0.85041 0.90969 0.89333 0.87047 0.90529 0.90607 0.86585 0.89847 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.73 71.98 0.70 -2.55 16 2 C 0.10 2.45 5.70 86.38 0.49 2.95 16 3 N -0.59 -18.96 2.49 -825.58 -2.05 -21.01 16 4 C 0.12 4.56 5.53 86.38 0.48 5.04 16 5 C 0.15 6.70 6.58 86.38 0.57 7.27 16 6 N -0.74 -40.33 5.60 -343.46 -1.92 -42.26 16 7 C -0.25 -14.75 9.99 84.03 0.84 -13.91 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 10 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 11 Si 0.98 47.44 29.55 68.60 2.03 49.47 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 14 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 15 C 0.59 19.94 7.62 86.69 0.66 20.60 16 16 O -0.57 -22.94 16.43 -4.03 -0.07 -23.01 16 17 C -0.12 -3.07 6.54 40.81 0.27 -2.80 16 18 C 0.11 2.13 10.40 83.85 0.87 3.00 16 19 N -0.34 -5.57 3.55 -325.97 -1.16 -6.73 16 20 C 0.14 1.26 3.32 45.11 0.15 1.41 16 21 C -0.16 -1.36 5.75 30.68 0.18 -1.18 16 22 C 0.07 0.39 6.84 72.01 0.49 0.88 16 23 O -0.40 -3.86 10.77 -148.98 -1.60 -5.47 16 24 C 0.07 0.31 6.84 72.01 0.49 0.80 16 25 C -0.17 -1.03 5.13 30.69 0.16 -0.87 16 26 N -0.08 -1.77 13.78 37.02 0.51 -1.26 16 27 N -0.21 -5.14 7.59 -50.00 -0.38 -5.52 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.04 1.08 7.10 -2.39 -0.02 1.06 16 30 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.08 2.07 8.02 -2.39 -0.02 2.05 16 32 H 0.10 2.68 5.26 -2.38 -0.01 2.66 16 33 H 0.10 3.22 8.07 -2.39 -0.02 3.20 16 34 H 0.07 2.81 7.36 -2.39 -0.02 2.79 16 35 H 0.00 0.13 8.14 -2.38 -0.02 0.12 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.38 21.33 7.67 -92.71 -0.71 20.62 16 38 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.22 3.40 7.25 -2.91 -0.02 3.38 16 40 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 47 H 0.08 0.63 7.07 -2.38 -0.02 0.62 16 48 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -77.28 391.28 2.71 -74.57 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.26 Total: 24.89 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 6.81 Total: 16.72 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -4.72 Total: -137.16 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.67 Total: -28.47 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -77.28 2.71 -74.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754075542.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.597 kcal (2) G-P(sol) polarization free energy of solvation -77.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds