Wall clock time and date at job start Tue Mar 31 2020 20:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.53002 * 109.47088 * 269.99330 * 4 3 2 6 6 N 1.46902 * 109.47307 * 180.02562 * 5 4 3 7 7 C 1.46897 * 110.99930 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47025 * 179.97438 * 7 6 5 9 9 O 1.21290 * 120.00136 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99998 * 179.97438 * 8 7 6 11 11 C 1.37092 * 119.99828 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00176 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99724 * 180.02562 * 11 10 8 14 14 N 1.31405 * 120.00147 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99822 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47102 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.46860 * 119.99809 * 15 13 11 18 18 H 1.48498 * 109.47240 * 239.99941 * 15 13 11 19 19 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 20 20 O 1.21283 * 119.99750 * 180.02562 * 19 3 2 21 21 C 1.50702 * 119.99928 * 0.28128 * 19 3 2 22 22 N 1.46491 * 109.46957 * 179.72354 * 21 19 3 23 23 C 1.36891 * 126.39629 * 265.01913 * 22 21 19 24 24 C 1.34668 * 106.81653 * 180.02562 * 23 22 21 25 25 N 1.34132 * 108.02185 * 0.02562 * 24 23 22 26 26 C 1.30493 * 109.25643 * 359.72322 * 25 24 23 27 27 C 1.50703 * 125.65400 * 180.29457 * 26 25 24 28 28 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 30 30 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 31 31 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 32 32 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 33 33 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 34 34 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 35 35 H 1.08999 * 109.47707 * 300.00330 * 5 4 3 36 36 H 1.09005 * 109.46685 * 60.00344 * 5 4 3 37 37 H 1.00894 * 110.99712 * 56.04829 * 6 5 4 38 38 H 1.09001 * 109.47054 * 300.00083 * 7 6 5 39 39 H 1.09007 * 109.47252 * 60.00123 * 7 6 5 40 40 H 0.96997 * 119.99520 * 0.02562 * 10 8 7 41 41 H 0.96997 * 120.00222 * 180.02562 * 14 13 11 42 42 H 1.09004 * 109.46965 * 299.72211 * 21 19 3 43 43 H 1.08994 * 109.46990 * 59.72065 * 21 19 3 44 44 H 1.07997 * 126.59166 * 0.04169 * 23 22 21 45 45 H 1.07996 * 125.99052 * 179.97438 * 24 23 22 46 46 H 1.09001 * 109.46773 * 270.17549 * 27 26 25 47 47 H 1.08998 * 109.46646 * 30.16986 * 27 26 25 48 48 H 1.08992 * 109.47415 * 150.17244 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7076 1.8314 -1.7104 6 7 3.9526 2.5243 -2.9823 7 6 5.3332 2.3148 -3.4384 8 6 5.5464 3.0383 -4.7431 9 8 4.6379 3.6669 -5.2436 10 7 6.7471 2.9876 -5.3534 11 6 6.9412 3.6462 -6.5401 12 1 6.1319 4.2052 -6.9860 13 6 8.1788 3.5935 -7.1695 14 7 9.1634 2.9128 -6.6271 15 14 8.4431 4.4902 -8.7867 16 1 7.1873 5.1767 -9.1830 17 1 9.5264 5.4931 -8.6253 18 1 8.8255 3.5133 -9.8377 19 6 2.2429 2.0167 1.1672 20 8 2.6468 3.1603 1.1671 21 6 1.9977 1.3042 2.4723 22 7 2.3200 2.2001 3.5857 23 6 3.5096 2.2623 4.2600 24 6 3.3745 3.2157 5.2013 25 7 2.1360 3.7216 5.1049 26 6 1.5005 3.1219 4.1357 27 6 0.0854 3.4082 3.7037 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0285 34 1 2.0956 3.1410 -1.1385 35 1 4.3884 2.2155 -0.9508 36 1 3.8745 0.7621 -1.8406 37 1 3.7425 3.5080 -2.9045 38 1 6.0255 2.7017 -2.6906 39 1 5.5110 1.2488 -3.5812 40 1 7.4738 2.4851 -4.9530 41 1 10.0274 2.8763 -7.0663 42 1 0.9499 1.0100 2.5343 43 1 2.6281 0.4167 2.5258 44 1 4.3879 1.6622 4.0728 45 1 4.1306 3.5193 5.9103 46 1 -0.6011 2.7740 4.2646 47 1 -0.1482 4.4554 3.8959 48 1 -0.0180 3.2024 2.6384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754082225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:22 Heat of formation + Delta-G solvation = -0.544078 kcal Electronic energy + Delta-G solvation = -28577.213649 eV Core-core repulsion = 24475.717595 eV Total energy + Delta-G solvation = -4101.496054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.42797 -40.34283 -38.31547 -36.83845 -35.45614 -34.33884 -33.84626 -32.01258 -31.57486 -31.19282 -29.77603 -28.10003 -27.01273 -25.88403 -24.09582 -23.88770 -22.40474 -21.64322 -20.50701 -19.50176 -19.16696 -18.02508 -17.85013 -17.58670 -16.50607 -16.25057 -15.84994 -15.62120 -15.37456 -14.74420 -14.55051 -14.47301 -14.29713 -14.10125 -13.94099 -13.89172 -13.59383 -13.34496 -13.25134 -13.11311 -12.95763 -12.81571 -12.65647 -12.44309 -12.24982 -12.10119 -11.69738 -11.57164 -11.51800 -11.19582 -11.03199 -10.65878 -10.35054 -10.23755 -10.20500 -9.75781 -9.53404 -9.20796 -8.55939 -8.49825 -8.13290 -7.97733 -6.42992 -3.83804 1.64575 2.03616 2.22560 2.63409 2.95821 3.15671 3.26288 3.33743 3.79924 3.88948 4.04943 4.11228 4.21205 4.26461 4.36879 4.43149 4.48116 4.60956 4.80285 4.85835 4.98781 5.06374 5.11820 5.14972 5.20011 5.21706 5.22325 5.25586 5.38921 5.46221 5.59842 5.62094 5.65785 5.77834 5.78605 5.93970 5.97935 6.05472 6.24288 6.51947 6.77860 6.91783 7.11360 7.54370 7.56051 7.64113 7.87883 8.05023 8.59634 9.16575 9.52636 10.03856 10.74833 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.001872 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.528564 B =14955.788742 C =15773.315034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 N -0.606 5.606 4 C 0.118 3.882 5 C 0.047 3.953 6 N -0.666 5.666 7 C 0.053 3.947 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.494 3.506 20 O -0.512 6.512 21 C 0.086 3.914 22 N -0.444 5.444 23 C -0.052 4.052 24 C -0.025 4.025 25 N -0.491 5.491 26 C 0.218 3.782 27 C -0.068 4.068 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.029 0.971 36 H 0.071 0.929 37 H 0.351 0.649 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.173 0.827 45 H 0.170 0.830 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.054 -11.276 21.568 29.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.025 4.025 3 N -0.340 5.340 4 C -0.005 4.005 5 C -0.084 4.084 6 N -0.299 5.299 7 C -0.080 4.080 8 C 0.226 3.774 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.207 1.207 19 C 0.279 3.721 20 O -0.386 6.386 21 C -0.041 4.041 22 N -0.128 5.128 23 C -0.183 4.183 24 C -0.172 4.172 25 N -0.210 5.210 26 C -0.044 4.044 27 C -0.127 4.127 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.171 0.829 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.190 0.810 45 H 0.187 0.813 46 H 0.098 0.902 47 H 0.111 0.889 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.848 -10.227 21.164 28.920 hybrid contribution 1.815 -0.239 -0.565 1.916 sum -15.033 -10.466 20.598 27.565 Atomic orbital electron populations 1.22238 0.95287 1.02820 1.02880 1.21720 0.94901 0.81946 1.03953 1.47970 1.65664 1.14578 1.05837 1.21462 0.96815 0.98762 0.83459 1.22241 0.95746 0.99720 0.90710 1.60016 1.23855 1.18408 1.27643 1.21656 0.88965 1.01213 0.96178 1.19776 0.84010 0.86296 0.87298 1.90523 1.42368 1.46553 1.67249 1.41867 1.10624 1.46098 1.21430 1.19760 0.97893 1.27515 0.97651 0.87827 1.25277 0.95183 0.97650 0.99921 1.69617 1.03159 1.41456 1.40081 0.85789 0.78517 0.78913 0.81062 1.19191 1.20746 1.20741 1.20732 0.78643 0.87302 0.85418 1.90830 1.43772 1.17249 1.86756 1.21750 1.05016 0.93071 0.84219 1.44870 1.12439 1.29854 1.25645 1.22648 0.90368 1.06228 0.99083 1.22247 0.95274 0.97918 1.01732 1.70249 1.06344 1.26120 1.18333 1.23243 0.95932 0.90972 0.94237 1.20176 0.87258 1.04335 1.00922 0.90939 0.92625 0.91536 0.89120 0.90444 0.88988 0.89645 0.95249 0.91091 0.82921 0.93831 0.89621 0.77465 0.91911 0.86150 0.85993 0.80976 0.81252 0.90194 0.88949 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 10.24 37.16 0.38 -0.18 16 2 C 0.10 0.39 5.94 -4.04 -0.02 0.36 16 3 N -0.61 -4.66 2.47 -173.68 -0.43 -5.09 16 4 C 0.12 1.20 5.67 -4.04 -0.02 1.18 16 5 C 0.05 0.57 6.01 -3.82 -0.02 0.55 16 6 N -0.67 -10.77 6.12 -115.05 -0.70 -11.47 16 7 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 8 C 0.44 10.53 7.82 -10.98 -0.09 10.45 16 9 O -0.58 -15.98 15.78 5.55 0.09 -15.89 16 10 N -0.56 -14.44 5.29 -10.96 -0.06 -14.49 16 11 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 12 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 15 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 19 C 0.49 4.68 7.74 -10.98 -0.09 4.59 16 20 O -0.51 -7.52 16.00 5.55 0.09 -7.43 16 21 C 0.09 0.53 4.71 -5.20 -0.02 0.50 16 22 N -0.44 -4.25 2.24 -115.19 -0.26 -4.50 16 23 C -0.05 -0.51 11.58 -16.56 -0.19 -0.70 16 24 C -0.02 -0.28 11.87 -17.81 -0.21 -0.49 16 25 N -0.49 -6.50 11.25 -10.82 -0.12 -6.62 16 26 C 0.22 2.42 7.89 -155.41 -1.23 1.20 16 27 C -0.07 -0.52 10.04 36.01 0.36 -0.16 16 28 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.05 0.16 7.24 -51.93 -0.38 -0.22 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.36 8.07 -51.93 -0.42 -0.06 16 32 H 0.08 0.14 6.43 -51.93 -0.33 -0.20 16 33 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.09 1.04 7.42 -51.93 -0.39 0.66 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.35 6.05 8.43 -39.29 -0.33 5.72 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 40 H 0.39 9.59 7.90 -40.82 -0.32 9.26 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.12 0.40 7.01 -51.93 -0.36 0.04 16 43 H 0.12 0.41 7.39 -51.93 -0.38 0.02 16 44 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.17 1.49 8.06 -52.49 -0.42 1.06 16 46 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.07 0.48 7.84 -51.93 -0.41 0.07 16 LS Contribution 406.44 15.07 6.13 6.13 Total: -1.00 -37.66 406.44 -8.47 -46.14 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -7.48 Total: 10.89 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -1.42 Total: 10.15 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: -0.85 Total: -66.12 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.18 Total: -23.32 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.66 -8.47 -46.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754082225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.591 kcal (2) G-P(sol) polarization free energy of solvation -37.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds