Wall clock time and date at job start Tue Mar 31 2020 20:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.53002 * 109.47088 * 269.99330 * 4 3 2 6 6 N 1.46902 * 109.47307 * 180.02562 * 5 4 3 7 7 C 1.46897 * 110.99930 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47025 * 179.97438 * 7 6 5 9 9 O 1.21290 * 120.00136 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99998 * 179.97438 * 8 7 6 11 11 C 1.37092 * 119.99828 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00176 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99724 * 180.02562 * 11 10 8 14 14 N 1.31405 * 120.00147 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99822 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47102 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.46860 * 119.99809 * 15 13 11 18 18 H 1.48498 * 109.47240 * 239.99941 * 15 13 11 19 19 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 20 20 O 1.21283 * 119.99750 * 180.02562 * 19 3 2 21 21 C 1.50702 * 119.99928 * 0.28128 * 19 3 2 22 22 N 1.46491 * 109.46957 * 179.72354 * 21 19 3 23 23 C 1.36891 * 126.39629 * 265.01913 * 22 21 19 24 24 C 1.34668 * 106.81653 * 180.02562 * 23 22 21 25 25 N 1.34132 * 108.02185 * 0.02562 * 24 23 22 26 26 C 1.30493 * 109.25643 * 359.72322 * 25 24 23 27 27 C 1.50703 * 125.65400 * 180.29457 * 26 25 24 28 28 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 30 30 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 31 31 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 32 32 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 33 33 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 34 34 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 35 35 H 1.08999 * 109.47707 * 300.00330 * 5 4 3 36 36 H 1.09005 * 109.46685 * 60.00344 * 5 4 3 37 37 H 1.00894 * 110.99712 * 56.04829 * 6 5 4 38 38 H 1.09001 * 109.47054 * 300.00083 * 7 6 5 39 39 H 1.09007 * 109.47252 * 60.00123 * 7 6 5 40 40 H 0.96997 * 119.99520 * 0.02562 * 10 8 7 41 41 H 0.96997 * 120.00222 * 180.02562 * 14 13 11 42 42 H 1.09004 * 109.46965 * 299.72211 * 21 19 3 43 43 H 1.08994 * 109.46990 * 59.72065 * 21 19 3 44 44 H 1.07997 * 126.59166 * 0.04169 * 23 22 21 45 45 H 1.07996 * 125.99052 * 179.97438 * 24 23 22 46 46 H 1.09001 * 109.46773 * 270.17549 * 27 26 25 47 47 H 1.08998 * 109.46646 * 30.16986 * 27 26 25 48 48 H 1.08992 * 109.47415 * 150.17244 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7076 1.8314 -1.7104 6 7 3.9526 2.5243 -2.9823 7 6 5.3332 2.3148 -3.4384 8 6 5.5464 3.0383 -4.7431 9 8 4.6379 3.6669 -5.2436 10 7 6.7471 2.9876 -5.3534 11 6 6.9412 3.6462 -6.5401 12 1 6.1319 4.2052 -6.9860 13 6 8.1788 3.5935 -7.1695 14 7 9.1634 2.9128 -6.6271 15 14 8.4431 4.4902 -8.7867 16 1 7.1873 5.1767 -9.1830 17 1 9.5264 5.4931 -8.6253 18 1 8.8255 3.5133 -9.8377 19 6 2.2429 2.0167 1.1672 20 8 2.6468 3.1603 1.1671 21 6 1.9977 1.3042 2.4723 22 7 2.3200 2.2001 3.5857 23 6 3.5096 2.2623 4.2600 24 6 3.3745 3.2157 5.2013 25 7 2.1360 3.7216 5.1049 26 6 1.5005 3.1219 4.1357 27 6 0.0854 3.4082 3.7037 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0285 34 1 2.0956 3.1410 -1.1385 35 1 4.3884 2.2155 -0.9508 36 1 3.8745 0.7621 -1.8406 37 1 3.7425 3.5080 -2.9045 38 1 6.0255 2.7017 -2.6906 39 1 5.5110 1.2488 -3.5812 40 1 7.4738 2.4851 -4.9530 41 1 10.0274 2.8763 -7.0663 42 1 0.9499 1.0100 2.5343 43 1 2.6281 0.4167 2.5258 44 1 4.3879 1.6622 4.0728 45 1 4.1306 3.5193 5.9103 46 1 -0.6011 2.7740 4.2646 47 1 -0.1482 4.4554 3.8959 48 1 -0.0180 3.2024 2.6384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754082225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:21 Heat of formation + Delta-G solvation = -28.375810 kcal Electronic energy + Delta-G solvation = -28578.420524 eV Core-core repulsion = 24475.717595 eV Total energy + Delta-G solvation = -4102.702929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.13513 -41.06532 -40.18389 -37.72736 -36.58719 -35.85494 -35.03137 -33.31798 -32.66306 -32.18798 -30.54893 -29.05110 -27.79872 -27.28363 -25.60273 -24.36120 -23.43022 -22.37988 -21.35257 -21.03329 -20.07422 -19.88644 -18.60479 -18.24808 -17.90407 -17.13408 -17.06682 -16.62972 -16.52223 -16.15795 -15.85339 -15.44173 -15.32357 -15.01157 -14.91572 -14.84453 -14.65484 -14.36660 -14.05115 -13.91406 -13.69339 -13.54625 -13.49733 -13.39406 -13.28525 -13.25510 -12.96731 -12.76473 -12.67133 -12.43168 -12.12810 -12.11397 -11.98832 -11.54348 -11.43119 -11.00000 -10.50943 -10.42781 -10.04986 -9.85945 -9.47970 -9.29303 -8.49505 -5.98490 0.93329 1.35024 1.36649 1.40625 1.54948 1.61812 1.99241 2.00761 2.16798 2.27864 2.92341 3.17299 3.28458 3.50980 3.58011 3.67372 3.84540 3.94747 3.96269 4.06491 4.14807 4.25776 4.37115 4.40142 4.43861 4.44719 4.52973 4.54046 4.61244 4.66281 4.74365 4.81409 4.85088 4.95513 4.98645 5.00237 5.26914 5.38540 5.41090 5.43223 5.79517 5.81017 6.02624 6.12556 6.22014 6.30175 6.56310 6.96697 7.09337 7.12509 7.51932 8.06996 8.68110 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.001872 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.528564 B =14955.788742 C =15773.315034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.091 3.909 3 N -0.597 5.597 4 C 0.125 3.875 5 C 0.056 3.944 6 N -0.676 5.676 7 C 0.067 3.933 8 C 0.437 3.563 9 O -0.623 6.623 10 N -0.572 5.572 11 C -0.334 4.334 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.994 3.006 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.269 1.269 19 C 0.492 3.508 20 O -0.574 6.574 21 C 0.088 3.912 22 N -0.446 5.446 23 C -0.049 4.049 24 C -0.057 4.057 25 N -0.536 5.536 26 C 0.202 3.798 27 C -0.066 4.066 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.016 0.984 36 H 0.092 0.908 37 H 0.342 0.658 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.155 0.845 43 H 0.160 0.840 44 H 0.201 0.799 45 H 0.181 0.819 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.375 -13.980 21.873 30.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.030 4.030 3 N -0.330 5.330 4 C 0.001 3.999 5 C -0.074 4.074 6 N -0.308 5.308 7 C -0.065 4.065 8 C 0.224 3.776 9 O -0.509 6.509 10 N -0.209 5.209 11 C -0.464 4.464 12 H 0.097 0.903 13 C -0.214 4.214 14 N -0.561 5.561 15 Si 0.818 3.182 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.194 1.194 19 C 0.279 3.721 20 O -0.453 6.453 21 C -0.038 4.038 22 N -0.129 5.129 23 C -0.181 4.181 24 C -0.203 4.203 25 N -0.257 5.257 26 C -0.061 4.061 27 C -0.124 4.124 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.110 0.890 37 H 0.160 0.840 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.172 0.828 43 H 0.177 0.823 44 H 0.218 0.782 45 H 0.198 0.802 46 H 0.125 0.875 47 H 0.101 0.899 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.176 -13.011 21.481 30.425 hybrid contribution 1.880 0.560 -0.651 2.067 sum -15.296 -12.451 20.830 28.686 Atomic orbital electron populations 1.22225 0.94585 1.03837 1.02377 1.22073 0.95457 0.79646 1.05865 1.48031 1.64716 1.15835 1.04406 1.21223 0.95820 0.97788 0.85081 1.22265 0.96613 1.00139 0.88406 1.60047 1.22642 1.18085 1.30021 1.21521 0.90444 1.01622 0.92954 1.20826 0.82764 0.85354 0.88641 1.90491 1.43467 1.48158 1.68815 1.41932 1.11455 1.46343 1.21201 1.19709 0.98080 1.29193 0.99383 0.90299 1.26072 0.94432 0.97969 1.02892 1.69672 1.03514 1.41650 1.41219 0.84851 0.78193 0.78023 0.77140 1.19801 1.19638 1.19406 1.21352 0.77370 0.86636 0.86745 1.90816 1.46788 1.20049 1.87647 1.22103 1.07927 0.92734 0.80991 1.45051 1.11980 1.29843 1.25995 1.23118 0.91162 1.05670 0.98200 1.22632 0.95363 0.99084 1.03219 1.70186 1.07587 1.27708 1.20171 1.23803 0.97133 0.91111 0.94022 1.20272 0.86135 1.04378 1.01643 0.89112 0.91988 0.93282 0.88641 0.87173 0.87881 0.92331 0.96523 0.88968 0.84039 0.92340 0.87119 0.76941 0.91234 0.82794 0.82283 0.78203 0.80234 0.87536 0.89901 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.52 10.24 71.98 0.74 0.22 16 2 C 0.09 0.36 5.94 86.38 0.51 0.88 16 3 N -0.60 -7.80 2.47 -821.80 -2.03 -9.83 16 4 C 0.12 2.43 5.67 86.38 0.49 2.92 16 5 C 0.06 1.28 6.01 86.30 0.52 1.80 16 6 N -0.68 -21.47 6.12 -517.91 -3.17 -24.64 16 7 C 0.07 2.33 6.17 85.56 0.53 2.86 16 8 C 0.44 21.12 7.82 87.66 0.69 21.80 16 9 O -0.62 -35.06 15.78 -3.06 -0.05 -35.11 16 10 N -0.57 -29.73 5.29 -306.98 -1.62 -31.35 16 11 C -0.33 -19.19 9.68 84.04 0.81 -18.37 16 12 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 13 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 14 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 15 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 19 C 0.49 8.41 7.74 87.66 0.68 9.09 16 20 O -0.57 -16.95 16.00 -3.04 -0.05 -17.00 16 21 C 0.09 0.77 4.71 85.64 0.40 1.17 16 22 N -0.45 -7.73 2.24 -518.36 -1.16 -8.90 16 23 C -0.05 -0.90 11.58 83.08 0.96 0.06 16 24 C -0.06 -1.30 11.87 83.52 0.99 -0.30 16 25 N -0.54 -14.52 11.25 -188.13 -2.12 -16.63 16 26 C 0.20 4.38 7.89 138.13 1.09 5.47 16 27 C -0.07 -0.94 10.04 71.24 0.72 -0.22 16 28 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.06 0.12 7.24 -2.39 -0.02 0.10 16 30 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.10 0.37 8.07 -2.39 -0.02 0.35 16 32 H 0.11 -0.22 6.43 -2.39 -0.02 -0.24 16 33 H 0.10 1.77 8.07 -2.39 -0.02 1.76 16 34 H 0.06 1.48 7.42 -2.38 -0.02 1.46 16 35 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.34 12.01 8.43 -89.70 -0.76 11.26 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 40 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 41 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 42 H 0.15 0.32 7.01 -2.38 -0.02 0.30 16 43 H 0.16 0.22 7.39 -2.39 -0.02 0.21 16 44 H 0.20 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.18 3.29 8.06 -2.91 -0.02 3.26 16 46 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.08 0.95 7.84 -2.39 -0.02 0.93 16 Total: -1.00 -85.95 406.44 1.19 -84.76 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: -0.50 Total: 35.93 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 9.59 Total: 27.09 kcal Atomic # 7 Polarization: -131.07 SS G_CDS: -9.82 Total: -140.89 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -0.10 Total: -52.11 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -85.95 1.19 -84.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754082225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.382 kcal (2) G-P(sol) polarization free energy of solvation -85.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds