Wall clock time and date at job start Tue Mar 31 2020 20:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35311 * 125.87247 * 2 1 4 4 C 1.35348 * 106.18025 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.75594 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47396 * 124.99800 * 5 4 3 7 7 C 1.50699 * 109.47396 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99883 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00006 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99958 * 175.53632 * 9 7 6 11 11 C 1.53007 * 109.49467 * 300.72515 * 10 9 7 12 12 O 1.42903 * 109.47003 * 305.34321 * 11 10 9 13 13 C 1.53040 * 109.50269 * 60.78610 * 10 9 7 14 14 C 1.53048 * 109.53472 * 58.58647 * 13 10 9 15 15 C 1.53195 * 109.30928 * 61.36897 * 14 13 10 16 16 N 1.46928 * 108.77419 * 305.36297 * 15 14 13 17 17 C 1.36939 * 120.62755 * 233.63257 * 16 15 14 18 18 H 1.08001 * 119.99946 * 141.72186 * 17 16 15 19 19 C 1.38806 * 120.00224 * 321.71597 * 17 16 15 20 20 N 1.31627 * 120.00086 * 354.09341 * 19 17 16 21 21 Si 1.86804 * 120.00244 * 174.09052 * 19 17 16 22 22 H 1.48499 * 109.46873 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47218 * 120.00335 * 21 19 17 24 24 H 1.48496 * 109.47075 * 240.00503 * 21 19 17 25 25 C 1.46922 * 118.73999 * 53.60971 * 16 15 14 26 26 N 1.33771 * 106.49670 * 0.02562 * 4 3 2 27 27 N 1.28635 * 108.88412 * 359.97438 * 26 4 3 28 28 H 1.09000 * 109.47092 * 270.02797 * 1 2 3 29 29 H 1.08997 * 109.47078 * 30.02668 * 1 2 3 30 30 H 1.09006 * 109.47396 * 150.02261 * 1 2 3 31 31 H 1.07997 * 126.91121 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47428 * 245.00443 * 5 4 3 33 33 H 1.09002 * 109.47144 * 5.00137 * 5 4 3 34 34 H 1.08997 * 109.47358 * 300.00686 * 6 5 4 35 35 H 1.09002 * 109.46698 * 60.00064 * 6 5 4 36 36 H 0.96996 * 120.00461 * 355.52604 * 9 7 6 37 37 H 1.08995 * 109.47330 * 65.34493 * 11 10 9 38 38 H 1.09001 * 109.46845 * 185.34669 * 11 10 9 39 39 H 0.96694 * 113.99738 * 179.97438 * 12 11 10 40 40 H 1.08991 * 109.46426 * 178.60460 * 13 10 9 41 41 H 1.09002 * 109.46376 * 298.57293 * 13 10 9 42 42 H 1.08996 * 109.49774 * 181.31479 * 14 13 10 43 43 H 1.09003 * 109.49764 * 301.41896 * 14 13 10 44 44 H 1.09001 * 109.59174 * 65.15136 * 15 14 13 45 45 H 1.09005 * 109.58302 * 185.43547 * 15 14 13 46 46 H 0.96998 * 119.99634 * 179.97438 * 20 19 17 47 47 H 1.09004 * 109.58760 * 186.60331 * 25 16 15 48 48 H 1.09003 * 109.58435 * 66.17821 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5322 0.6404 -0.0006 5 6 4.7881 1.4733 -0.0003 6 6 5.6706 1.0649 1.1809 7 6 6.9263 1.8982 1.1815 8 8 7.0981 2.7366 0.3222 9 7 7.8582 1.7119 2.1371 10 6 9.1214 2.4519 2.0826 11 6 9.8455 2.1303 0.7736 12 8 10.0015 0.7152 0.6508 13 6 8.8370 3.9540 2.1532 14 6 8.0829 4.2718 3.4466 15 6 8.9527 3.8873 4.6476 16 7 9.3511 2.4797 4.5117 17 6 9.1188 1.5879 5.5247 18 1 8.8145 0.5774 5.2953 19 6 9.2745 1.9828 6.8462 20 7 9.7564 3.1757 7.1243 21 14 8.8002 0.8213 8.2302 22 1 8.2873 -0.4488 7.6566 23 1 9.9918 0.5400 9.0707 24 1 7.7439 1.4496 9.0636 25 6 10.0029 2.0468 3.2681 26 7 3.4576 -0.6953 -0.0015 27 7 2.2192 -1.0431 -0.0009 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.9382 2.1280 0.0004 32 1 5.3307 1.3129 -0.9319 33 1 4.5251 2.5272 0.0901 34 1 5.1280 1.2253 2.1125 35 1 5.9336 0.0110 1.0905 36 1 7.6926 1.0879 2.8610 37 1 9.2613 2.5057 -0.0665 38 1 10.8266 2.6053 0.7750 39 1 10.4534 0.4381 -0.1579 40 1 9.7784 4.5030 2.1376 41 1 8.2302 4.2494 1.2972 42 1 7.8602 5.3380 3.4852 43 1 7.1528 3.7040 3.4743 44 1 9.8415 4.5179 4.6720 45 1 8.3843 4.0212 5.5681 46 1 9.8649 3.4517 8.0478 47 1 10.1267 0.9639 3.2782 48 1 10.9773 2.5273 3.1800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754863530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:48 Heat of formation + Delta-G solvation = 30.509425 kcal Electronic energy + Delta-G solvation = -30265.026241 eV Core-core repulsion = 26164.876768 eV Total energy + Delta-G solvation = -4100.149474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.41136 -39.98092 -37.54994 -35.96556 -35.29247 -33.79901 -33.46683 -32.20794 -30.54102 -30.42260 -29.47219 -28.13999 -25.39005 -25.04584 -24.96660 -22.27355 -22.16395 -21.44052 -20.67551 -19.81709 -18.60770 -17.44497 -16.96253 -16.85559 -16.69505 -16.57087 -15.49311 -15.16967 -14.90057 -14.81777 -14.46107 -14.03845 -13.84516 -13.77488 -13.55190 -13.34746 -13.01792 -12.95327 -12.66530 -12.47453 -12.26991 -12.14717 -11.85103 -11.66791 -11.42245 -11.29614 -11.09202 -10.96209 -10.78196 -10.74958 -10.39238 -10.24134 -10.13691 -10.06172 -9.77731 -9.60428 -9.52011 -9.30584 -8.92574 -8.48621 -8.35492 -6.52219 -5.80679 -3.36501 1.38852 2.12480 2.38465 3.13664 3.35139 3.43412 3.45121 3.70137 4.08264 4.30957 4.45947 4.55156 4.58006 4.70234 4.83435 4.86781 5.12425 5.25349 5.28489 5.38987 5.39962 5.51014 5.61250 5.66299 5.74764 5.78574 5.85746 5.96849 6.03068 6.09346 6.10282 6.20550 6.33066 6.35580 6.48426 6.55850 6.70975 6.75804 6.88225 6.96401 7.20973 7.40924 7.68364 7.78877 7.93104 8.18126 8.34679 8.49973 8.77405 9.22251 9.79897 10.42953 11.26843 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.003155 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.150441 B = 8873.243302 C =10317.080478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.298 5.298 3 C -0.051 4.051 4 C -0.013 4.013 5 C -0.013 4.013 6 C -0.135 4.135 7 C 0.518 3.482 8 O -0.559 6.559 9 N -0.688 5.688 10 C 0.167 3.833 11 C 0.067 3.933 12 O -0.564 6.564 13 C -0.120 4.120 14 C -0.135 4.135 15 C 0.173 3.827 16 N -0.587 5.587 17 C -0.259 4.259 18 H 0.062 0.938 19 C 0.013 3.987 20 N -0.899 5.899 21 Si 0.901 3.099 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.147 3.853 26 N -0.262 5.262 27 N -0.089 5.089 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.191 0.809 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.406 0.594 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.369 0.631 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.018 0.982 45 H 0.078 0.922 46 H 0.254 0.746 47 H 0.066 0.934 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.420 -1.005 -15.400 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.092 5.092 3 C -0.201 4.201 4 C -0.151 4.151 5 C -0.052 4.052 6 C -0.176 4.176 7 C 0.304 3.696 8 O -0.440 6.440 9 N -0.337 5.337 10 C 0.079 3.921 11 C -0.012 4.012 12 O -0.368 6.368 13 C -0.158 4.158 14 C -0.175 4.175 15 C 0.048 3.952 16 N -0.310 5.310 17 C -0.389 4.389 18 H 0.079 0.921 19 C -0.186 4.186 20 N -0.542 5.542 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.216 1.216 24 H -0.216 1.216 25 C 0.020 3.980 26 N -0.129 5.129 27 N -0.069 5.069 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.208 0.792 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.241 0.759 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.215 0.785 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -14.560 -1.894 -15.216 21.145 hybrid contribution -0.245 0.427 0.716 0.869 sum -14.806 -1.467 -14.500 20.775 Atomic orbital electron populations 1.22244 0.72883 1.05780 1.05011 1.47228 1.09334 1.05043 1.47563 1.23423 0.90908 0.94705 1.11088 1.22131 0.95478 0.91446 1.06030 1.19580 0.89159 0.97194 0.99286 1.21566 0.94496 1.01488 1.00031 1.20412 0.84569 0.83253 0.81331 1.90569 1.79241 1.35510 1.38657 1.45786 1.16419 1.44302 1.27184 1.20946 0.84250 0.91963 0.94990 1.22631 0.98510 0.81388 0.98697 1.86523 1.81993 1.22560 1.45713 1.21760 1.00746 0.93843 0.99451 1.22097 0.99803 0.98973 0.96596 1.20745 0.95061 0.84554 0.94850 1.43931 1.67268 1.06308 1.13481 1.19108 1.40556 0.94124 0.85094 0.92053 1.25357 0.98271 0.96841 0.98176 1.69978 1.47192 1.18983 1.18032 0.86245 0.77684 0.80624 0.82341 1.20080 1.21568 1.21649 1.21131 0.92509 0.98962 0.85363 1.75070 1.09231 1.12182 1.16454 1.78315 0.96550 1.12148 1.19862 0.89075 0.88361 0.88133 0.79224 0.89432 0.89453 0.89277 0.88353 0.75864 0.92140 0.93687 0.78543 0.92354 0.90862 0.93486 0.92858 0.96394 0.90404 0.93621 0.91526 0.95260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 11.39 59.84 0.68 0.98 16 2 N -0.30 -2.75 3.74 -68.06 -0.25 -3.00 16 3 C -0.05 -0.46 11.54 -17.05 -0.20 -0.66 16 4 C -0.01 -0.15 6.50 -82.78 -0.54 -0.69 16 5 C -0.01 -0.15 5.08 -27.88 -0.14 -0.29 16 6 C -0.14 -1.80 5.68 -27.88 -0.16 -1.95 16 7 C 0.52 8.30 7.24 -10.99 -0.08 8.22 16 8 O -0.56 -9.88 12.29 5.55 0.07 -9.81 16 9 N -0.69 -11.83 3.94 -47.49 -0.19 -12.02 16 10 C 0.17 2.99 0.45 -131.70 -0.06 2.93 16 11 C 0.07 1.06 5.63 37.16 0.21 1.27 16 12 O -0.56 -8.59 13.08 -35.23 -0.46 -9.05 16 13 C -0.12 -2.16 4.48 -26.69 -0.12 -2.28 16 14 C -0.14 -2.65 5.93 -26.61 -0.16 -2.80 16 15 C 0.17 4.07 5.20 -3.71 -0.02 4.05 16 16 N -0.59 -14.15 2.84 -172.32 -0.49 -14.64 16 17 C -0.26 -6.83 9.51 -15.06 -0.14 -6.98 16 18 H 0.06 1.60 7.84 -52.49 -0.41 1.18 16 19 C 0.01 0.37 5.12 -17.43 -0.09 0.28 16 20 N -0.90 -25.65 11.33 55.49 0.63 -25.02 16 21 Si 0.90 21.33 29.56 -169.99 -5.02 16.30 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.15 3.09 5.07 -3.71 -0.02 3.07 16 26 N -0.26 -3.80 12.40 33.29 0.41 -3.39 16 27 N -0.09 -1.17 13.17 60.35 0.79 -0.37 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 33 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.41 7.27 8.45 -40.82 -0.34 6.92 16 37 H 0.06 0.99 6.43 -51.93 -0.33 0.66 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.37 3.87 9.12 45.56 0.42 4.29 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.34 6.12 -51.93 -0.32 1.02 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.05 1.07 7.53 -51.93 -0.39 0.68 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.08 2.04 6.51 -51.93 -0.34 1.70 16 46 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.07 1.44 7.79 -51.93 -0.40 1.03 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 386.24 15.07 5.82 5.82 Total: -1.00 -34.36 386.24 -6.27 -40.64 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.75 Total: 9.40 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -0.83 Total: 5.13 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.90 Total: -58.44 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.39 Total: -18.86 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.36 -6.27 -40.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754863530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.147 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds