Wall clock time and date at job start Tue Mar 31 2020 20:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35311 * 125.87247 * 2 1 4 4 C 1.35348 * 106.18025 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.75594 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47396 * 124.99800 * 5 4 3 7 7 C 1.50699 * 109.47396 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99883 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00006 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99958 * 175.53632 * 9 7 6 11 11 C 1.53007 * 109.49467 * 300.72515 * 10 9 7 12 12 O 1.42903 * 109.47003 * 305.34321 * 11 10 9 13 13 C 1.53040 * 109.50269 * 60.78610 * 10 9 7 14 14 C 1.53048 * 109.53472 * 58.58647 * 13 10 9 15 15 C 1.53195 * 109.30928 * 61.36897 * 14 13 10 16 16 N 1.46928 * 108.77419 * 305.36297 * 15 14 13 17 17 C 1.36939 * 120.62755 * 233.63257 * 16 15 14 18 18 H 1.08001 * 119.99946 * 141.72186 * 17 16 15 19 19 C 1.38806 * 120.00224 * 321.71597 * 17 16 15 20 20 N 1.31627 * 120.00086 * 354.09341 * 19 17 16 21 21 Si 1.86804 * 120.00244 * 174.09052 * 19 17 16 22 22 H 1.48499 * 109.46873 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47218 * 120.00335 * 21 19 17 24 24 H 1.48496 * 109.47075 * 240.00503 * 21 19 17 25 25 C 1.46922 * 118.73999 * 53.60971 * 16 15 14 26 26 N 1.33771 * 106.49670 * 0.02562 * 4 3 2 27 27 N 1.28635 * 108.88412 * 359.97438 * 26 4 3 28 28 H 1.09000 * 109.47092 * 270.02797 * 1 2 3 29 29 H 1.08997 * 109.47078 * 30.02668 * 1 2 3 30 30 H 1.09006 * 109.47396 * 150.02261 * 1 2 3 31 31 H 1.07997 * 126.91121 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47428 * 245.00443 * 5 4 3 33 33 H 1.09002 * 109.47144 * 5.00137 * 5 4 3 34 34 H 1.08997 * 109.47358 * 300.00686 * 6 5 4 35 35 H 1.09002 * 109.46698 * 60.00064 * 6 5 4 36 36 H 0.96996 * 120.00461 * 355.52604 * 9 7 6 37 37 H 1.08995 * 109.47330 * 65.34493 * 11 10 9 38 38 H 1.09001 * 109.46845 * 185.34669 * 11 10 9 39 39 H 0.96694 * 113.99738 * 179.97438 * 12 11 10 40 40 H 1.08991 * 109.46426 * 178.60460 * 13 10 9 41 41 H 1.09002 * 109.46376 * 298.57293 * 13 10 9 42 42 H 1.08996 * 109.49774 * 181.31479 * 14 13 10 43 43 H 1.09003 * 109.49764 * 301.41896 * 14 13 10 44 44 H 1.09001 * 109.59174 * 65.15136 * 15 14 13 45 45 H 1.09005 * 109.58302 * 185.43547 * 15 14 13 46 46 H 0.96998 * 119.99634 * 179.97438 * 20 19 17 47 47 H 1.09004 * 109.58760 * 186.60331 * 25 16 15 48 48 H 1.09003 * 109.58435 * 66.17821 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5322 0.6404 -0.0006 5 6 4.7881 1.4733 -0.0003 6 6 5.6706 1.0649 1.1809 7 6 6.9263 1.8982 1.1815 8 8 7.0981 2.7366 0.3222 9 7 7.8582 1.7119 2.1371 10 6 9.1214 2.4519 2.0826 11 6 9.8455 2.1303 0.7736 12 8 10.0015 0.7152 0.6508 13 6 8.8370 3.9540 2.1532 14 6 8.0829 4.2718 3.4466 15 6 8.9527 3.8873 4.6476 16 7 9.3511 2.4797 4.5117 17 6 9.1188 1.5879 5.5247 18 1 8.8145 0.5774 5.2953 19 6 9.2745 1.9828 6.8462 20 7 9.7564 3.1757 7.1243 21 14 8.8002 0.8213 8.2302 22 1 8.2873 -0.4488 7.6566 23 1 9.9918 0.5400 9.0707 24 1 7.7439 1.4496 9.0636 25 6 10.0029 2.0468 3.2681 26 7 3.4576 -0.6953 -0.0015 27 7 2.2192 -1.0431 -0.0009 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.9382 2.1280 0.0004 32 1 5.3307 1.3129 -0.9319 33 1 4.5251 2.5272 0.0901 34 1 5.1280 1.2253 2.1125 35 1 5.9336 0.0110 1.0905 36 1 7.6926 1.0879 2.8610 37 1 9.2613 2.5057 -0.0665 38 1 10.8266 2.6053 0.7750 39 1 10.4534 0.4381 -0.1579 40 1 9.7784 4.5030 2.1376 41 1 8.2302 4.2494 1.2972 42 1 7.8602 5.3380 3.4852 43 1 7.1528 3.7040 3.4743 44 1 9.8415 4.5179 4.6720 45 1 8.3843 4.0212 5.5681 46 1 9.8649 3.4517 8.0478 47 1 10.1267 0.9639 3.2782 48 1 10.9773 2.5273 3.1800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754863530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:46 Heat of formation + Delta-G solvation = 4.262385 kcal Electronic energy + Delta-G solvation = -30266.164398 eV Core-core repulsion = 26164.876768 eV Total energy + Delta-G solvation = -4101.287631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.18721 -41.37059 -39.00286 -37.35022 -36.07800 -35.39822 -34.39674 -33.82166 -32.28217 -31.75943 -30.64984 -28.67271 -27.27014 -26.55049 -26.02428 -23.92099 -22.99721 -22.65092 -21.99858 -21.11563 -20.05235 -18.65317 -18.27900 -18.10580 -17.79723 -17.48527 -16.88440 -16.64813 -16.44409 -15.82307 -15.69450 -15.48485 -15.18465 -14.78573 -14.74281 -14.49492 -14.27776 -14.12118 -14.01406 -13.65969 -13.51218 -13.37722 -13.18775 -12.97553 -12.83496 -12.81215 -12.55047 -12.48015 -12.25605 -12.20086 -11.96835 -11.71611 -11.62205 -11.45710 -11.18935 -10.97533 -10.92909 -10.54966 -10.36444 -10.07264 -9.73035 -8.50712 -7.85475 -5.44271 0.67104 1.46426 1.49136 1.50177 1.58661 1.61499 1.86010 2.42293 2.50604 3.31722 3.36337 3.40273 3.68868 3.75680 3.86376 4.07216 4.10376 4.13090 4.21960 4.31183 4.32596 4.35855 4.41492 4.45651 4.58236 4.64559 4.65781 4.72498 4.80006 4.82787 4.91756 4.96157 5.05880 5.07755 5.11948 5.17829 5.23905 5.28749 5.34884 5.55356 5.68357 5.72181 5.74040 5.82969 6.45925 6.82346 6.96565 7.19341 7.45429 7.53029 7.83354 8.41897 9.19734 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.003155 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.150441 B = 8873.243302 C =10317.080478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.289 5.289 3 C -0.032 4.032 4 C -0.037 4.037 5 C -0.002 4.002 6 C -0.125 4.125 7 C 0.520 3.480 8 O -0.573 6.573 9 N -0.693 5.693 10 C 0.170 3.830 11 C 0.076 3.924 12 O -0.578 6.578 13 C -0.112 4.112 14 C -0.121 4.121 15 C 0.183 3.817 16 N -0.600 5.600 17 C -0.261 4.261 18 H 0.064 0.936 19 C -0.039 4.039 20 N -0.932 5.932 21 Si 0.964 3.036 22 H -0.265 1.265 23 H -0.293 1.293 24 H -0.291 1.291 25 C 0.152 3.848 26 N -0.305 5.305 27 N -0.125 5.125 28 H 0.105 0.895 29 H 0.132 0.868 30 H 0.105 0.895 31 H 0.233 0.767 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.402 0.598 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.391 0.609 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.048 0.952 44 H -0.003 1.003 45 H 0.045 0.955 46 H 0.250 0.750 47 H 0.057 0.943 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.300 -0.725 -16.677 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.083 5.083 3 C -0.184 4.184 4 C -0.177 4.177 5 C -0.041 4.041 6 C -0.166 4.166 7 C 0.307 3.693 8 O -0.454 6.454 9 N -0.341 5.341 10 C 0.082 3.918 11 C -0.003 4.003 12 O -0.386 6.386 13 C -0.151 4.151 14 C -0.161 4.161 15 C 0.057 3.943 16 N -0.323 5.323 17 C -0.392 4.392 18 H 0.082 0.918 19 C -0.235 4.235 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.220 1.220 24 H -0.218 1.218 25 C 0.026 3.974 26 N -0.172 5.172 27 N -0.105 5.105 28 H 0.124 0.876 29 H 0.150 0.850 30 H 0.124 0.876 31 H 0.249 0.751 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.236 0.764 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.240 0.760 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.015 0.985 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -16.462 -1.658 -16.543 23.396 hybrid contribution 0.293 0.348 1.063 1.156 sum -16.169 -1.310 -15.480 22.423 Atomic orbital electron populations 1.22734 0.69811 1.07810 1.06592 1.47672 1.11035 1.04285 1.45346 1.24022 0.89822 0.96246 1.08263 1.22259 0.96698 0.90935 1.07765 1.19460 0.88939 0.97870 0.97876 1.21499 0.93427 1.00501 1.01157 1.20783 0.84855 0.83093 0.80522 1.90556 1.79608 1.36224 1.39001 1.45824 1.16555 1.44266 1.27487 1.20801 0.84395 0.91940 0.94679 1.22455 0.98868 0.81963 0.97036 1.86470 1.82528 1.22081 1.47472 1.21695 1.00866 0.94030 0.98477 1.21905 0.98763 0.99890 0.95498 1.20525 0.94314 0.84178 0.95250 1.44083 1.67905 1.06175 1.14111 1.19396 1.39457 0.94487 0.85830 0.91849 1.26047 0.98915 0.98198 1.00369 1.70127 1.48908 1.20590 1.18019 0.85262 0.76915 0.79150 0.79440 1.18962 1.22048 1.21805 1.21118 0.92805 0.98268 0.85204 1.74993 1.10396 1.13795 1.17975 1.78221 0.96635 1.13756 1.21843 0.87639 0.84981 0.87598 0.75062 0.90533 0.88117 0.88677 0.88949 0.76399 0.92245 0.92274 0.76032 0.91767 0.90258 0.91790 0.93281 0.98514 0.93631 0.94117 0.92415 0.95787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 11.39 127.77 1.46 1.76 16 2 N -0.29 -4.71 3.74 -369.25 -1.38 -6.09 16 3 C -0.03 -0.49 11.54 83.49 0.96 0.47 16 4 C -0.04 -0.85 6.50 41.60 0.27 -0.58 16 5 C 0.00 -0.04 5.08 29.85 0.15 0.11 16 6 C -0.13 -3.22 5.68 29.85 0.17 -3.05 16 7 C 0.52 16.02 7.24 87.66 0.64 16.66 16 8 O -0.57 -19.24 12.29 -3.04 -0.04 -19.28 16 9 N -0.69 -23.27 3.94 -422.57 -1.67 -24.93 16 10 C 0.17 5.92 0.45 3.68 0.00 5.92 16 11 C 0.08 2.28 5.63 71.98 0.41 2.68 16 12 O -0.58 -16.67 13.08 -148.98 -1.95 -18.62 16 13 C -0.11 -3.90 4.48 30.62 0.14 -3.76 16 14 C -0.12 -4.65 5.93 30.68 0.18 -4.47 16 15 C 0.18 8.73 5.20 86.36 0.45 9.18 16 16 N -0.60 -29.19 2.84 -699.09 -1.98 -31.17 16 17 C -0.26 -13.91 9.51 84.03 0.80 -13.11 16 18 H 0.06 3.30 7.84 -2.91 -0.02 3.28 16 19 C -0.04 -2.13 5.12 84.86 0.43 -1.69 16 20 N -0.93 -54.39 11.33 21.65 0.25 -54.15 16 21 Si 0.96 44.33 29.56 68.60 2.03 46.35 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 25 C 0.15 6.35 5.07 86.36 0.44 6.79 16 26 N -0.31 -8.81 12.40 -48.60 -0.60 -9.41 16 27 N -0.13 -3.21 13.17 37.02 0.49 -2.73 16 28 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.13 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.23 1.33 8.06 -2.91 -0.02 1.30 16 32 H 0.08 1.86 8.10 -2.39 -0.02 1.84 16 33 H 0.10 1.95 8.08 -2.39 -0.02 1.93 16 34 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.40 14.25 8.45 -92.71 -0.78 13.46 16 37 H 0.06 1.82 6.43 -2.39 -0.02 1.81 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.39 7.41 9.12 -74.06 -0.68 6.73 16 40 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.08 2.72 6.12 -2.39 -0.01 2.71 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.05 1.92 7.53 -2.39 -0.02 1.90 16 44 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.05 2.45 6.51 -2.38 -0.02 2.44 16 46 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 47 H 0.06 2.49 7.79 -2.38 -0.02 2.47 16 48 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -75.75 386.24 1.16 -74.58 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.47 Total: 28.54 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 6.49 Total: 16.90 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -4.90 Total: -128.48 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -1.99 Total: -37.90 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -75.75 1.16 -74.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754863530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.845 kcal (2) G-P(sol) polarization free energy of solvation -75.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds