Wall clock time and date at job start Tue Mar 31 2020 21:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37360 * 125.83181 * 2 1 4 4 N 1.29396 * 108.82610 * 180.02562 * 3 2 1 5 5 N 1.40167 * 108.14787 * 0.02562 * 4 3 2 6 6 C 1.46494 * 126.35742 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47233 * 270.02526 * 6 5 4 8 8 O 1.21282 * 119.99789 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00015 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99632 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.46975 * 324.99757 * 10 9 7 12 12 C 1.53001 * 109.47114 * 85.00289 * 10 9 7 13 13 C 1.52994 * 109.46782 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47381 * 299.99687 * 13 12 10 15 15 H 1.08999 * 109.46895 * 300.00432 * 14 13 12 16 16 C 1.53002 * 109.46855 * 180.02562 * 14 13 12 17 17 N 1.46499 * 109.47337 * 65.00328 * 16 14 13 18 18 C 1.36935 * 119.99938 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00083 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99632 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99535 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00484 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47326 * 270.00576 * 22 20 18 24 24 H 1.48506 * 109.46545 * 30.00326 * 22 20 18 25 25 H 1.48498 * 109.47210 * 150.00037 * 22 20 18 26 26 C 1.53001 * 109.46907 * 60.00389 * 14 13 12 27 27 C 1.53002 * 109.47221 * 300.00016 * 26 14 13 28 28 C 1.34820 * 125.83480 * 180.32869 * 2 1 3 29 29 O 1.21822 * 126.30020 * 0.02562 * 28 2 1 30 30 H 1.08997 * 109.47439 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.46924 * 119.98343 * 1 2 3 32 32 H 1.09006 * 109.47211 * 239.97729 * 1 2 3 33 33 H 1.08000 * 125.58489 * 359.97438 * 3 2 1 34 34 H 1.08995 * 109.47637 * 150.02141 * 6 5 4 35 35 H 1.09000 * 109.47100 * 30.01655 * 6 5 4 36 36 H 0.97000 * 120.00718 * 0.02562 * 9 7 6 37 37 H 1.08994 * 109.46838 * 299.99575 * 12 10 9 38 38 H 1.09000 * 109.46753 * 59.99963 * 12 10 9 39 39 H 1.09005 * 109.47003 * 180.02562 * 13 12 10 40 40 H 1.08993 * 109.47459 * 60.00224 * 13 12 10 41 41 H 1.08993 * 109.47262 * 304.99645 * 16 14 13 42 42 H 1.09005 * 109.46767 * 185.00260 * 16 14 13 43 43 H 0.96999 * 119.99984 * 0.02562 * 17 16 14 44 44 H 0.97005 * 119.99717 * 179.97438 * 21 20 18 45 45 H 1.09006 * 109.47121 * 60.00008 * 26 14 13 46 46 H 1.08999 * 109.47230 * 179.97438 * 26 14 13 47 47 H 1.08992 * 109.47248 * 180.02562 * 27 26 14 48 48 H 1.09004 * 109.46560 * 300.00113 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7352 -0.0005 5 7 3.5344 -0.6662 -0.0015 6 6 4.7313 -1.5110 -0.0019 7 6 5.1424 -1.7992 -1.4228 8 8 4.4986 -1.3441 -2.3445 9 7 6.2253 -2.5625 -1.6694 10 6 6.6246 -2.8431 -3.0508 11 1 5.7353 -2.9370 -3.6740 12 6 7.4948 -1.6980 -3.5727 13 6 7.9122 -1.9914 -5.0151 14 6 8.7075 -3.2978 -5.0603 15 1 9.5965 -3.2037 -4.4367 16 6 9.1254 -3.5907 -6.5027 17 7 10.0546 -2.5553 -6.9618 18 6 10.5669 -2.6089 -8.2306 19 1 10.2862 -3.4147 -8.8927 20 6 11.4477 -1.6281 -8.6654 21 7 11.9397 -1.6794 -9.8851 22 14 11.9337 -0.2348 -7.5200 23 1 10.9844 0.8951 -7.6844 24 1 11.8953 -0.7132 -6.1146 25 1 13.3079 0.2210 -7.8503 26 6 7.8372 -4.4428 -4.5384 27 6 7.4197 -4.1495 -3.0959 28 6 2.2543 -1.0930 -0.0063 29 8 1.8806 -2.2524 -0.0134 30 1 -0.3634 1.0276 0.0005 31 1 -0.3633 -0.5136 -0.8901 32 1 -0.3634 -0.5142 0.8898 33 1 1.9249 2.1373 -0.0004 34 1 4.5148 -2.4481 0.5109 35 1 5.5411 -0.9938 0.5128 36 1 6.7400 -2.9269 -0.9323 37 1 6.9285 -0.7674 -3.5402 38 1 8.3841 -1.6043 -2.9494 39 1 8.5326 -1.1758 -5.3868 40 1 7.0233 -2.0854 -5.6387 41 1 8.2430 -3.5967 -7.1425 42 1 9.6142 -4.5639 -6.5488 43 1 10.3075 -1.8323 -6.3668 44 1 12.5550 -0.9938 -10.1891 45 1 6.9481 -4.5369 -5.1620 46 1 8.4036 -5.3736 -4.5710 47 1 6.8002 -4.9655 -2.7239 48 1 8.3089 -4.0555 -2.4724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754954161.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:28 Heat of formation + Delta-G solvation = 15.778023 kcal Electronic energy + Delta-G solvation = -28999.017276 eV Core-core repulsion = 24898.229001 eV Total energy + Delta-G solvation = -4100.788275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.77597 -40.21657 -38.44199 -37.57328 -35.73056 -35.27397 -33.77196 -32.35230 -31.43677 -30.73655 -29.72650 -28.55019 -27.20713 -25.15775 -23.26579 -22.86410 -22.29988 -21.70292 -20.77534 -20.69434 -19.73471 -18.14057 -17.85479 -17.54066 -16.68614 -16.62784 -16.33920 -15.91983 -15.30645 -15.03632 -14.72055 -14.54580 -14.27777 -14.20694 -14.03593 -13.69509 -13.41033 -13.27576 -12.97932 -12.86544 -12.68168 -12.50530 -12.29685 -12.24337 -12.12500 -11.99023 -11.29147 -11.10609 -11.04244 -10.89832 -10.79949 -10.61660 -10.37157 -10.21073 -10.15464 -10.05281 -9.80552 -9.53671 -9.19256 -8.92004 -8.84681 -7.17180 -5.72834 -3.07370 1.26872 1.58563 2.30795 2.32521 2.65802 2.99719 3.39740 3.42665 3.47431 3.96091 4.30159 4.36537 4.47133 4.62642 4.64666 4.66264 4.73329 4.76198 4.93423 4.98084 5.02214 5.20832 5.22250 5.40696 5.43548 5.47148 5.55239 5.58433 5.60765 5.64787 5.83077 5.89911 5.97835 6.06145 6.10173 6.16093 6.21137 6.30619 6.36994 6.48762 6.58719 6.77013 6.89202 7.20020 7.21624 7.67054 7.93981 8.04553 8.46671 9.26349 9.98904 10.19357 11.45828 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019764 B = 0.002054 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.374053 B =13626.553790 C =14324.642522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.562 5.562 3 C 0.257 3.743 4 N -0.274 5.274 5 N -0.438 5.438 6 C 0.143 3.857 7 C 0.495 3.505 8 O -0.522 6.522 9 N -0.723 5.723 10 C 0.146 3.854 11 H 0.088 0.912 12 C -0.127 4.127 13 C -0.108 4.108 14 C -0.099 4.099 15 H 0.069 0.931 16 C 0.161 3.839 17 N -0.756 5.756 18 C -0.241 4.241 19 H 0.089 0.911 20 C 0.002 3.998 21 N -0.936 5.936 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.278 1.278 25 H -0.291 1.291 26 C -0.107 4.107 27 C -0.122 4.122 28 C 0.652 3.348 29 O -0.552 6.552 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.232 0.768 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.400 0.600 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.422 2.842 28.483 35.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.291 5.291 3 C -0.042 4.042 4 N -0.094 5.094 5 N -0.258 5.258 6 C 0.018 3.982 7 C 0.279 3.721 8 O -0.397 6.397 9 N -0.375 5.375 10 C 0.043 3.957 11 H 0.106 0.894 12 C -0.166 4.166 13 C -0.147 4.147 14 C -0.118 4.118 15 H 0.088 0.912 16 C 0.034 3.966 17 N -0.401 5.401 18 C -0.371 4.371 19 H 0.107 0.893 20 C -0.194 4.194 21 N -0.584 5.584 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.204 1.204 25 H -0.218 1.218 26 C -0.145 4.145 27 C -0.161 4.161 28 C 0.352 3.648 29 O -0.425 6.425 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.248 0.752 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.234 0.766 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.115 2.506 27.574 34.820 hybrid contribution 0.009 0.813 0.944 1.246 sum -21.106 3.320 28.517 35.633 Atomic orbital electron populations 1.21817 0.73985 1.04242 1.04009 1.45869 1.08927 1.06615 1.67645 1.25969 0.85743 0.94758 0.97771 1.77005 1.18305 0.91285 1.22825 1.48161 1.05385 1.03247 1.69004 1.21215 0.85975 0.95416 0.95636 1.20891 0.80793 0.78866 0.91538 1.90758 1.53077 1.50105 1.45758 1.46045 1.29275 1.52655 1.09514 1.21099 0.98214 0.94890 0.81534 0.89403 1.21925 0.99151 0.98057 0.97419 1.21508 1.00266 0.98030 0.94857 1.21411 0.97893 0.94412 0.98056 0.91213 1.20662 0.92735 0.92142 0.91069 1.42735 1.54376 1.28820 1.14195 1.19083 1.20456 1.08956 0.88613 0.89272 1.24677 0.99686 0.98717 0.96293 1.69709 1.35888 1.36193 1.16606 0.86549 0.77926 0.83388 0.80714 1.21071 1.20375 1.21765 1.21458 1.00061 0.98626 0.94395 1.21792 0.99721 0.95898 0.98646 1.16637 0.81882 0.85097 0.81198 1.91091 1.77669 1.15288 1.58461 0.88747 0.90391 0.90427 0.75171 0.85775 0.85634 0.76635 0.91806 0.91934 0.91168 0.91691 0.95526 0.95635 0.80681 0.93138 0.91542 0.91197 0.91512 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.39 11.08 59.85 0.66 1.05 16 2 N -0.56 -4.44 3.14 -130.10 -0.41 -4.85 16 3 C 0.26 1.57 12.61 -89.12 -1.12 0.45 16 4 N -0.27 -2.64 12.53 29.87 0.37 -2.27 16 5 N -0.44 -4.80 3.11 -66.31 -0.21 -5.01 16 6 C 0.14 1.20 6.87 -5.19 -0.04 1.16 16 7 C 0.50 5.68 7.86 -10.98 -0.09 5.60 16 8 O -0.52 -8.61 16.09 5.56 0.09 -8.52 16 9 N -0.72 -6.55 5.08 -53.80 -0.27 -6.82 16 10 C 0.15 1.65 2.45 -67.92 -0.17 1.48 16 11 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 12 C -0.13 -1.63 5.49 -26.73 -0.15 -1.78 16 13 C -0.11 -1.65 5.08 -26.73 -0.14 -1.78 16 14 C -0.10 -1.49 2.22 -90.62 -0.20 -1.69 16 15 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 16 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 17 N -0.76 -18.33 5.13 -59.91 -0.31 -18.64 16 18 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 19 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 20 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 21 N -0.94 -29.97 13.97 55.49 0.78 -29.19 16 22 Si 0.88 22.58 27.74 -169.99 -4.71 17.87 16 23 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 26 C -0.11 -1.27 5.20 -26.73 -0.14 -1.40 16 27 C -0.12 -1.18 5.39 -26.73 -0.14 -1.32 16 28 C 0.65 7.93 8.61 -86.73 -0.75 7.19 16 29 O -0.55 -8.46 17.77 5.08 0.09 -8.37 16 30 H 0.09 0.00 8.07 -51.93 -0.42 -0.42 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.23 0.10 8.06 -52.49 -0.42 -0.32 16 34 H 0.12 0.79 8.11 -51.93 -0.42 0.37 16 35 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.40 2.17 8.60 -40.82 -0.35 1.82 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.21 7.18 -51.93 -0.37 0.83 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.36 8.52 4.71 -40.82 -0.19 8.33 16 44 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 394.31 15.07 5.94 5.94 Total: -1.00 -41.72 394.31 -8.84 -50.56 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.66 Total: 4.42 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -2.54 Total: 4.87 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -0.05 Total: -66.78 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.18 Total: -16.89 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -41.72 -8.84 -50.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754954161.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.342 kcal (2) G-P(sol) polarization free energy of solvation -41.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds