Wall clock time and date at job start Tue Mar 31 2020 21:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37360 * 125.83181 * 2 1 4 4 N 1.29396 * 108.82610 * 180.02562 * 3 2 1 5 5 N 1.40167 * 108.14787 * 0.02562 * 4 3 2 6 6 C 1.46494 * 126.35742 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47233 * 270.02526 * 6 5 4 8 8 O 1.21282 * 119.99789 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00015 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99632 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.46975 * 324.99757 * 10 9 7 12 12 C 1.53001 * 109.47114 * 85.00289 * 10 9 7 13 13 C 1.52994 * 109.46782 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47381 * 299.99687 * 13 12 10 15 15 H 1.08999 * 109.46895 * 300.00432 * 14 13 12 16 16 C 1.53002 * 109.46855 * 180.02562 * 14 13 12 17 17 N 1.46499 * 109.47337 * 65.00328 * 16 14 13 18 18 C 1.36935 * 119.99938 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00083 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99632 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99535 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00484 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47326 * 270.00576 * 22 20 18 24 24 H 1.48506 * 109.46545 * 30.00326 * 22 20 18 25 25 H 1.48498 * 109.47210 * 150.00037 * 22 20 18 26 26 C 1.53001 * 109.46907 * 60.00389 * 14 13 12 27 27 C 1.53002 * 109.47221 * 300.00016 * 26 14 13 28 28 C 1.34820 * 125.83480 * 180.32869 * 2 1 3 29 29 O 1.21822 * 126.30020 * 0.02562 * 28 2 1 30 30 H 1.08997 * 109.47439 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.46924 * 119.98343 * 1 2 3 32 32 H 1.09006 * 109.47211 * 239.97729 * 1 2 3 33 33 H 1.08000 * 125.58489 * 359.97438 * 3 2 1 34 34 H 1.08995 * 109.47637 * 150.02141 * 6 5 4 35 35 H 1.09000 * 109.47100 * 30.01655 * 6 5 4 36 36 H 0.97000 * 120.00718 * 0.02562 * 9 7 6 37 37 H 1.08994 * 109.46838 * 299.99575 * 12 10 9 38 38 H 1.09000 * 109.46753 * 59.99963 * 12 10 9 39 39 H 1.09005 * 109.47003 * 180.02562 * 13 12 10 40 40 H 1.08993 * 109.47459 * 60.00224 * 13 12 10 41 41 H 1.08993 * 109.47262 * 304.99645 * 16 14 13 42 42 H 1.09005 * 109.46767 * 185.00260 * 16 14 13 43 43 H 0.96999 * 119.99984 * 0.02562 * 17 16 14 44 44 H 0.97005 * 119.99717 * 179.97438 * 21 20 18 45 45 H 1.09006 * 109.47121 * 60.00008 * 26 14 13 46 46 H 1.08999 * 109.47230 * 179.97438 * 26 14 13 47 47 H 1.08992 * 109.47248 * 180.02562 * 27 26 14 48 48 H 1.09004 * 109.46560 * 300.00113 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7352 -0.0005 5 7 3.5344 -0.6662 -0.0015 6 6 4.7313 -1.5110 -0.0019 7 6 5.1424 -1.7992 -1.4228 8 8 4.4986 -1.3441 -2.3445 9 7 6.2253 -2.5625 -1.6694 10 6 6.6246 -2.8431 -3.0508 11 1 5.7353 -2.9370 -3.6740 12 6 7.4948 -1.6980 -3.5727 13 6 7.9122 -1.9914 -5.0151 14 6 8.7075 -3.2978 -5.0603 15 1 9.5965 -3.2037 -4.4367 16 6 9.1254 -3.5907 -6.5027 17 7 10.0546 -2.5553 -6.9618 18 6 10.5669 -2.6089 -8.2306 19 1 10.2862 -3.4147 -8.8927 20 6 11.4477 -1.6281 -8.6654 21 7 11.9397 -1.6794 -9.8851 22 14 11.9337 -0.2348 -7.5200 23 1 10.9844 0.8951 -7.6844 24 1 11.8953 -0.7132 -6.1146 25 1 13.3079 0.2210 -7.8503 26 6 7.8372 -4.4428 -4.5384 27 6 7.4197 -4.1495 -3.0959 28 6 2.2543 -1.0930 -0.0063 29 8 1.8806 -2.2524 -0.0134 30 1 -0.3634 1.0276 0.0005 31 1 -0.3633 -0.5136 -0.8901 32 1 -0.3634 -0.5142 0.8898 33 1 1.9249 2.1373 -0.0004 34 1 4.5148 -2.4481 0.5109 35 1 5.5411 -0.9938 0.5128 36 1 6.7400 -2.9269 -0.9323 37 1 6.9285 -0.7674 -3.5402 38 1 8.3841 -1.6043 -2.9494 39 1 8.5326 -1.1758 -5.3868 40 1 7.0233 -2.0854 -5.6387 41 1 8.2430 -3.5967 -7.1425 42 1 9.6142 -4.5639 -6.5488 43 1 10.3075 -1.8323 -6.3668 44 1 12.5550 -0.9938 -10.1891 45 1 6.9481 -4.5369 -5.1620 46 1 8.4036 -5.3736 -4.5710 47 1 6.8002 -4.9655 -2.7239 48 1 8.3089 -4.0555 -2.4724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754954161.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:27 Heat of formation + Delta-G solvation = -14.920955 kcal Electronic energy + Delta-G solvation = -29000.348484 eV Core-core repulsion = 24898.229001 eV Total energy + Delta-G solvation = -4102.119483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.42978 -41.14107 -39.54557 -38.43694 -36.92775 -36.20290 -35.21191 -33.51015 -32.86907 -31.76624 -31.05276 -29.31381 -27.82136 -26.65329 -24.39829 -23.92540 -23.45091 -22.57000 -22.01167 -21.58144 -20.88002 -19.66048 -18.82292 -18.58076 -17.42057 -17.40289 -17.04466 -16.71646 -16.62803 -16.19250 -16.02649 -15.75914 -15.44462 -15.24632 -15.04077 -14.81578 -14.66607 -14.34378 -14.01409 -13.78804 -13.59172 -13.51308 -13.35594 -13.32654 -13.17708 -12.96434 -12.94354 -12.83522 -12.17049 -12.10165 -12.06252 -11.87618 -11.68208 -11.45921 -11.42052 -11.30212 -11.19733 -10.96856 -10.73832 -10.11242 -9.67078 -9.29711 -8.04450 -5.37343 0.65953 1.06414 1.34748 1.39211 1.46270 1.48088 1.53110 2.06450 2.32146 2.46545 3.26627 3.44412 3.55250 3.62520 3.70428 3.84600 3.94680 4.07289 4.10276 4.11472 4.14013 4.34129 4.40348 4.41518 4.46386 4.49459 4.53267 4.55800 4.76948 4.77579 4.87563 4.90253 4.98204 5.02934 5.06659 5.10688 5.17076 5.21565 5.26576 5.44613 5.45521 5.57302 5.65229 5.74259 6.20099 6.47140 6.58426 6.90103 7.06714 7.17163 7.83662 8.03351 9.17289 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019764 B = 0.002054 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.374053 B =13626.553790 C =14324.642522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.560 5.560 3 C 0.277 3.723 4 N -0.312 5.312 5 N -0.446 5.446 6 C 0.141 3.859 7 C 0.492 3.508 8 O -0.580 6.580 9 N -0.704 5.704 10 C 0.151 3.849 11 H 0.058 0.942 12 C -0.116 4.116 13 C -0.107 4.107 14 C -0.086 4.086 15 H 0.080 0.920 16 C 0.155 3.845 17 N -0.757 5.757 18 C -0.236 4.236 19 H 0.054 0.946 20 C -0.067 4.067 21 N -0.984 5.984 22 Si 0.956 3.044 23 H -0.280 1.280 24 H -0.249 1.249 25 H -0.292 1.292 26 C -0.104 4.104 27 C -0.111 4.111 28 C 0.630 3.370 29 O -0.599 6.599 30 H 0.141 0.859 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.288 0.712 34 H 0.143 0.857 35 H 0.160 0.840 36 H 0.422 0.578 37 H 0.043 0.957 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.016 0.984 42 H 0.027 0.973 43 H 0.366 0.634 44 H 0.258 0.742 45 H 0.058 0.942 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.709 3.968 32.331 39.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.287 5.287 3 C -0.021 4.021 4 N -0.133 5.133 5 N -0.265 5.265 6 C 0.016 3.984 7 C 0.277 3.723 8 O -0.459 6.459 9 N -0.357 5.357 10 C 0.046 3.954 11 H 0.076 0.924 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.105 4.105 15 H 0.098 0.902 16 C 0.029 3.971 17 N -0.403 5.403 18 C -0.367 4.367 19 H 0.072 0.928 20 C -0.258 4.258 21 N -0.635 5.635 22 Si 0.782 3.218 23 H -0.207 1.207 24 H -0.173 1.173 25 H -0.219 1.219 26 C -0.142 4.142 27 C -0.149 4.149 28 C 0.329 3.671 29 O -0.476 6.476 30 H 0.160 0.840 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.303 0.697 34 H 0.161 0.839 35 H 0.178 0.822 36 H 0.260 0.740 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.045 0.955 43 H 0.200 0.800 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.410 3.620 31.499 38.259 hybrid contribution -0.005 0.439 -0.341 0.556 sum -21.415 4.060 31.158 38.025 Atomic orbital electron populations 1.22155 0.71844 1.07207 1.03488 1.46145 1.10234 1.06023 1.66322 1.27129 0.84546 0.96119 0.94308 1.77002 1.20343 0.90415 1.25529 1.48408 1.05502 1.04116 1.68438 1.21489 0.86534 0.96700 0.93687 1.21507 0.80440 0.78004 0.92301 1.90731 1.54995 1.52513 1.47681 1.45833 1.28765 1.51732 1.09387 1.20899 0.96979 0.95299 0.82241 0.92371 1.21799 0.99802 0.97807 0.96063 1.21448 0.99270 0.97501 0.96327 1.21305 0.98760 0.95485 0.94929 0.90211 1.20872 0.91273 0.90965 0.93948 1.42736 1.54822 1.30114 1.12600 1.19067 1.19933 1.07632 0.90053 0.92809 1.25551 1.00190 1.01946 0.98141 1.69896 1.37093 1.37521 1.18981 0.85395 0.77129 0.79449 0.79780 1.20673 1.17324 1.21902 1.21433 0.99280 0.97729 0.95786 1.21719 1.00649 0.95210 0.97278 1.17075 0.82895 0.85501 0.81588 1.91028 1.78586 1.17257 1.60761 0.84036 0.91699 0.90235 0.69728 0.83937 0.82244 0.74032 0.93790 0.90046 0.93314 0.93222 0.96633 0.95488 0.80043 0.93324 0.92284 0.89800 0.89528 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 11.08 127.77 1.42 1.97 16 2 N -0.56 -8.07 3.14 -683.68 -2.15 -10.22 16 3 C 0.28 2.67 12.61 179.82 2.27 4.93 16 4 N -0.31 -5.52 12.53 -59.42 -0.74 -6.27 16 5 N -0.45 -9.43 3.11 -481.78 -1.50 -10.93 16 6 C 0.14 2.15 6.87 85.64 0.59 2.73 16 7 C 0.49 10.88 7.86 87.66 0.69 11.57 16 8 O -0.58 -19.55 16.09 -3.04 -0.05 -19.59 16 9 N -0.70 -11.22 5.08 -442.51 -2.25 -13.47 16 10 C 0.15 3.14 2.45 44.99 0.11 3.25 16 11 H 0.06 1.60 7.58 -2.39 -0.02 1.58 16 12 C -0.12 -2.83 5.49 30.59 0.17 -2.66 16 13 C -0.11 -3.20 5.08 30.59 0.16 -3.05 16 14 C -0.09 -2.45 2.22 -10.79 -0.02 -2.47 16 15 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 16 C 0.16 6.05 5.65 86.38 0.49 6.54 16 17 N -0.76 -36.56 5.13 -343.45 -1.76 -38.32 16 18 C -0.24 -13.98 10.47 84.03 0.88 -13.10 16 19 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 20 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 21 N -0.98 -64.70 13.97 21.65 0.30 -64.40 16 22 Si 0.96 46.61 27.74 68.60 1.90 48.51 16 23 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.25 -10.84 6.52 99.48 0.65 -10.19 16 25 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 26 C -0.10 -2.22 5.20 30.60 0.16 -2.06 16 27 C -0.11 -1.75 5.39 30.60 0.16 -1.59 16 28 C 0.63 15.30 8.61 178.99 1.54 16.84 16 29 O -0.60 -18.94 17.77 -4.74 -0.08 -19.03 16 30 H 0.14 -0.54 8.07 -2.39 -0.02 -0.56 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.29 -1.10 8.06 -2.91 -0.02 -1.12 16 34 H 0.14 1.58 8.11 -2.39 -0.02 1.56 16 35 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.42 3.04 8.60 -92.71 -0.80 2.24 16 37 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 1.65 7.18 -2.38 -0.02 1.63 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.37 16.77 4.71 -92.71 -0.44 16.33 16 44 H 0.26 16.09 8.31 -92.70 -0.77 15.32 16 45 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 47 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -97.25 394.31 2.42 -94.83 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -0.32 Total: 19.59 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 9.07 Total: 19.30 kcal Atomic # 7 Polarization: -135.51 SS G_CDS: -8.10 Total: -143.61 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.13 Total: -38.62 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.90 Total: 48.51 kcal Total: -97.25 2.42 -94.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754954161.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.908 kcal (2) G-P(sol) polarization free energy of solvation -97.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds