Wall clock time and date at job start Tue Mar 31 2020 20:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99990 * 2 1 4 4 C 1.52997 * 109.46828 * 66.04555 * 3 2 1 5 5 C 1.53011 * 109.46953 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47162 * 180.02562 * 5 4 3 7 7 C 1.46506 * 119.99556 * 270.00041 * 6 5 4 8 8 C 1.34773 * 120.00428 * 89.99490 * 6 5 4 9 9 O 1.21569 * 119.99509 * 354.51057 * 8 6 5 10 10 C 1.47703 * 120.00450 * 174.22569 * 8 6 5 11 11 C 1.41502 * 126.52198 * 174.29915 * 10 8 6 12 12 C 1.35366 * 105.50204 * 179.84434 * 11 10 8 13 13 N 1.35038 * 107.23114 * 0.41056 * 12 11 10 14 14 C 1.46499 * 124.88378 * 179.70611 * 13 12 11 15 15 N 1.28468 * 110.22481 * 359.72844 * 13 12 11 16 16 C 1.46903 * 111.00367 * 236.04727 * 2 1 3 17 17 C 1.50700 * 109.46888 * 293.95349 * 16 2 1 18 18 O 1.21292 * 120.00202 * 359.97438 * 17 16 2 19 19 N 1.34774 * 120.00130 * 179.97438 * 17 16 2 20 20 C 1.37094 * 120.00330 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99747 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00135 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99911 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99901 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47569 * 89.99451 * 24 22 20 26 26 H 1.48506 * 109.46794 * 209.99560 * 24 22 20 27 27 H 1.48506 * 109.47079 * 329.99399 * 24 22 20 28 28 H 1.08996 * 109.47213 * 60.00189 * 1 2 3 29 29 H 1.09005 * 109.46672 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47055 * 299.99571 * 1 2 3 31 31 H 1.09000 * 109.46805 * 306.04863 * 3 2 1 32 32 H 1.08998 * 109.47273 * 186.04892 * 3 2 1 33 33 H 1.08998 * 109.47690 * 60.00452 * 4 3 2 34 34 H 1.09002 * 109.47132 * 299.99844 * 4 3 2 35 35 H 1.09000 * 109.46982 * 60.00123 * 5 4 3 36 36 H 1.08998 * 109.46971 * 300.00229 * 5 4 3 37 37 H 1.09000 * 109.46969 * 265.23731 * 7 6 5 38 38 H 1.08992 * 109.47320 * 25.24228 * 7 6 5 39 39 H 1.09001 * 109.46477 * 145.24662 * 7 6 5 40 40 H 1.08001 * 127.24732 * 359.97438 * 11 10 8 41 41 H 1.08002 * 126.38179 * 180.13960 * 12 11 10 42 42 H 1.09003 * 109.46876 * 270.00065 * 14 13 12 43 43 H 1.08996 * 109.46933 * 29.99504 * 14 13 12 44 44 H 1.08997 * 109.46918 * 149.99989 * 14 13 12 45 45 H 1.09003 * 109.47027 * 53.94632 * 16 2 1 46 46 H 1.08992 * 109.47197 * 173.95041 * 16 2 1 47 47 H 0.97004 * 119.99403 * 359.97438 * 19 17 16 48 48 H 0.96996 * 119.99680 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1792 3.4861 1.3180 6 7 1.8312 4.1427 2.5805 7 6 0.5742 4.8862 2.6972 8 6 2.6672 4.0629 3.6346 9 8 3.6605 3.3647 3.5710 10 6 2.3802 4.8284 4.8647 11 6 3.0947 4.7615 6.0842 12 6 2.4763 5.6339 6.9142 13 7 1.4486 6.1787 6.2282 14 6 0.5161 7.1727 6.7654 15 7 1.4061 5.6995 5.0370 16 6 1.9956 -0.7660 -1.1376 17 6 1.6371 -2.2204 -0.9729 18 8 1.0055 -2.5833 -0.0030 19 7 2.0182 -3.1180 -1.9032 20 6 1.6916 -4.4410 -1.7536 21 1 1.1293 -4.7641 -0.8900 22 6 2.0850 -5.3664 -2.7126 23 7 2.7697 -4.9734 -3.7631 24 14 1.6394 -7.1691 -2.5091 25 1 0.3274 -7.4305 -3.1535 26 1 2.6817 -8.0118 -3.1485 27 1 1.5551 -7.4980 -1.0634 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9273 -0.8309 32 1 3.0797 1.3445 -0.1083 33 1 2.0658 1.5016 2.1492 34 1 0.5472 2.0844 1.4265 35 1 1.7445 4.0417 0.4872 36 1 3.2635 3.4595 1.2095 37 1 0.7562 5.9417 2.4950 38 1 -0.1461 4.4972 1.9777 39 1 0.1775 4.7728 3.7061 40 1 3.9540 4.1458 6.3054 41 1 2.7507 5.8502 7.9361 42 1 -0.3323 6.6645 7.2237 43 1 1.0241 7.7798 7.5147 44 1 0.1627 7.8133 5.9574 45 1 1.5611 -0.3873 -2.0628 46 1 3.0798 -0.6610 -1.1756 47 1 2.5229 -2.8276 -2.6790 48 1 3.0439 -5.6194 -4.4326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755045400.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:41 Heat of formation + Delta-G solvation = 33.801856 kcal Electronic energy + Delta-G solvation = -28268.014593 eV Core-core repulsion = 24168.007890 eV Total energy + Delta-G solvation = -4100.006703 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.99336 -39.74958 -38.54981 -36.79450 -35.69760 -33.96103 -33.77569 -32.07829 -31.16800 -30.96942 -28.24076 -27.73751 -27.15840 -26.10303 -24.79722 -23.45041 -22.06940 -21.76810 -20.64584 -19.51767 -19.04241 -17.76539 -17.74250 -16.95697 -16.70672 -16.33542 -15.76991 -15.50635 -15.35655 -14.71636 -14.55460 -14.40455 -14.23727 -13.95947 -13.62283 -13.56437 -13.35359 -13.22254 -13.18272 -13.06698 -13.00083 -12.63429 -12.12511 -11.90887 -11.80013 -11.53642 -11.40458 -11.16929 -11.11402 -11.03421 -10.84439 -10.43698 -10.33829 -10.20192 -10.15146 -9.60135 -9.41766 -9.40981 -8.80224 -8.34469 -7.89974 -7.73310 -6.35172 -3.75579 1.28535 1.81279 2.04573 2.82626 3.22517 3.23001 3.30657 3.37188 3.90719 3.99066 4.10416 4.32099 4.35745 4.41899 4.50691 4.77825 4.81042 4.98179 5.00245 5.15555 5.16957 5.28186 5.31540 5.32909 5.41135 5.44440 5.47977 5.59644 5.63863 5.72321 5.82759 5.84059 6.02075 6.05006 6.09410 6.18885 6.27193 6.36183 6.38866 6.49667 6.66511 7.16457 7.40346 7.50987 7.53171 7.61678 8.03873 8.13862 8.69713 9.25271 9.62278 10.14817 10.82773 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027631 B = 0.001644 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.129455 B =17025.310374 C =17232.995977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.059 3.941 4 C -0.130 4.130 5 C 0.119 3.881 6 N -0.605 5.605 7 C 0.086 3.914 8 C 0.600 3.400 9 O -0.525 6.525 10 C -0.014 4.014 11 C -0.177 4.177 12 C -0.020 4.020 13 N -0.290 5.290 14 C 0.087 3.913 15 N -0.259 5.259 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.012 0.988 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.163 0.837 41 H 0.182 0.818 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 29.376 16.859 34.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.243 5.243 3 C -0.070 4.070 4 C -0.169 4.169 5 C -0.004 4.004 6 N -0.338 5.338 7 C -0.058 4.058 8 C 0.386 3.614 9 O -0.399 6.399 10 C -0.173 4.173 11 C -0.205 4.205 12 C -0.162 4.162 13 N -0.078 5.078 14 C -0.054 4.054 15 N -0.096 5.096 16 C -0.085 4.085 17 C 0.231 3.769 18 O -0.461 6.461 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.030 0.970 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.181 0.819 41 H 0.199 0.801 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.384 29.003 17.248 34.028 hybrid contribution 0.391 -0.559 -0.717 0.990 sum -3.994 28.444 16.531 33.141 Atomic orbital electron populations 1.22552 0.87005 1.04273 0.98741 1.61522 1.08547 1.11519 1.42672 1.22035 1.00329 0.88763 0.95853 1.21929 1.01271 0.94610 0.99064 1.21513 1.01913 0.92942 0.84022 1.47666 1.21128 1.52722 1.12250 1.21926 0.84755 0.95650 1.03436 1.16971 0.82796 0.80381 0.81241 1.90827 1.27884 1.39818 1.81401 1.21949 0.97174 1.01361 0.96858 1.21824 1.03615 1.02998 0.92080 1.22877 0.92707 1.00224 1.00400 1.45530 1.22871 1.31178 1.08194 1.22174 0.92436 0.90177 1.00586 1.73729 1.21888 1.12545 1.01452 1.21861 1.00720 0.94090 0.91849 1.19774 0.85292 0.86718 0.85148 1.90481 1.43853 1.80171 1.31584 1.41867 1.49598 1.07345 1.21487 1.19702 1.32784 0.82357 1.07857 0.87952 1.25247 0.96891 1.00497 0.95368 1.69614 1.38213 1.35694 1.10933 0.85863 0.77940 0.81856 0.78649 1.20505 1.20967 1.19438 0.96953 0.88762 0.92191 0.95261 0.90698 0.90269 0.91790 0.90446 0.89628 0.92556 0.91361 0.89924 0.81924 0.80083 0.89644 0.88629 0.88542 0.93578 0.89379 0.77509 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.96 60.07 0.54 0.92 16 2 N -0.52 -9.36 4.50 -244.37 -1.10 -10.46 16 3 C 0.06 0.82 4.96 -3.82 -0.02 0.80 16 4 C -0.13 -1.68 5.46 -26.73 -0.15 -1.83 16 5 C 0.12 1.30 5.35 -4.04 -0.02 1.28 16 6 N -0.61 -6.88 2.87 -182.74 -0.53 -7.41 16 7 C 0.09 0.73 9.32 59.85 0.56 1.29 16 8 C 0.60 8.18 7.66 -12.40 -0.09 8.08 16 9 O -0.53 -8.86 16.57 5.30 0.09 -8.77 16 10 C -0.01 -0.16 6.76 -82.77 -0.56 -0.72 16 11 C -0.18 -1.73 10.81 -39.36 -0.43 -2.15 16 12 C -0.02 -0.13 11.46 -17.17 -0.20 -0.32 16 13 N -0.29 -1.94 3.70 -68.13 -0.25 -2.19 16 14 C 0.09 0.16 11.31 59.85 0.68 0.83 16 15 N -0.26 -2.47 8.74 33.42 0.29 -2.18 16 16 C 0.05 0.88 5.45 -4.97 -0.03 0.85 16 17 C 0.45 10.97 7.47 -10.99 -0.08 10.89 16 18 O -0.58 -16.14 13.91 5.55 0.08 -16.06 16 19 N -0.57 -14.83 5.29 -10.96 -0.06 -14.89 16 20 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 21 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -25.10 13.05 55.50 0.72 -24.37 16 24 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 1.96 5.83 -51.93 -0.30 1.66 16 30 H 0.06 0.92 6.47 -51.93 -0.34 0.59 16 31 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.07 1.01 7.93 -51.93 -0.41 0.60 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.80 6.55 -51.93 -0.34 0.46 16 35 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 36 H 0.09 1.02 7.50 -51.93 -0.39 0.63 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 39 H 0.08 0.75 5.91 -51.93 -0.31 0.44 16 40 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.18 0.46 8.06 -52.49 -0.42 0.04 16 42 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 43 H 0.10 -0.06 8.13 -51.93 -0.42 -0.48 16 44 H 0.10 0.13 8.14 -51.93 -0.42 -0.30 16 45 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 46 H 0.09 1.54 7.93 -51.93 -0.41 1.12 16 47 H 0.39 9.81 7.90 -40.82 -0.32 9.48 16 48 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 398.44 15.07 6.00 6.00 Total: -1.00 -37.03 398.44 -7.21 -44.23 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.39 Total: 7.80 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -0.04 Total: 11.76 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -0.92 Total: -61.49 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: 0.17 Total: -24.83 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.03 -7.21 -44.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755045400.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.037 kcal (2) G-P(sol) polarization free energy of solvation -37.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds