Wall clock time and date at job start Tue Mar 31 2020 20:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99990 * 2 1 4 4 C 1.52997 * 109.46828 * 66.04555 * 3 2 1 5 5 C 1.53011 * 109.46953 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47162 * 180.02562 * 5 4 3 7 7 C 1.46506 * 119.99556 * 270.00041 * 6 5 4 8 8 C 1.34773 * 120.00428 * 89.99490 * 6 5 4 9 9 O 1.21569 * 119.99509 * 354.51057 * 8 6 5 10 10 C 1.47703 * 120.00450 * 174.22569 * 8 6 5 11 11 C 1.41502 * 126.52198 * 174.29915 * 10 8 6 12 12 C 1.35366 * 105.50204 * 179.84434 * 11 10 8 13 13 N 1.35038 * 107.23114 * 0.41056 * 12 11 10 14 14 C 1.46499 * 124.88378 * 179.70611 * 13 12 11 15 15 N 1.28468 * 110.22481 * 359.72844 * 13 12 11 16 16 C 1.46903 * 111.00367 * 236.04727 * 2 1 3 17 17 C 1.50700 * 109.46888 * 293.95349 * 16 2 1 18 18 O 1.21292 * 120.00202 * 359.97438 * 17 16 2 19 19 N 1.34774 * 120.00130 * 179.97438 * 17 16 2 20 20 C 1.37094 * 120.00330 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99747 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00135 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99911 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99901 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47569 * 89.99451 * 24 22 20 26 26 H 1.48506 * 109.46794 * 209.99560 * 24 22 20 27 27 H 1.48506 * 109.47079 * 329.99399 * 24 22 20 28 28 H 1.08996 * 109.47213 * 60.00189 * 1 2 3 29 29 H 1.09005 * 109.46672 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47055 * 299.99571 * 1 2 3 31 31 H 1.09000 * 109.46805 * 306.04863 * 3 2 1 32 32 H 1.08998 * 109.47273 * 186.04892 * 3 2 1 33 33 H 1.08998 * 109.47690 * 60.00452 * 4 3 2 34 34 H 1.09002 * 109.47132 * 299.99844 * 4 3 2 35 35 H 1.09000 * 109.46982 * 60.00123 * 5 4 3 36 36 H 1.08998 * 109.46971 * 300.00229 * 5 4 3 37 37 H 1.09000 * 109.46969 * 265.23731 * 7 6 5 38 38 H 1.08992 * 109.47320 * 25.24228 * 7 6 5 39 39 H 1.09001 * 109.46477 * 145.24662 * 7 6 5 40 40 H 1.08001 * 127.24732 * 359.97438 * 11 10 8 41 41 H 1.08002 * 126.38179 * 180.13960 * 12 11 10 42 42 H 1.09003 * 109.46876 * 270.00065 * 14 13 12 43 43 H 1.08996 * 109.46933 * 29.99504 * 14 13 12 44 44 H 1.08997 * 109.46918 * 149.99989 * 14 13 12 45 45 H 1.09003 * 109.47027 * 53.94632 * 16 2 1 46 46 H 1.08992 * 109.47197 * 173.95041 * 16 2 1 47 47 H 0.97004 * 119.99403 * 359.97438 * 19 17 16 48 48 H 0.96996 * 119.99680 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1792 3.4861 1.3180 6 7 1.8312 4.1427 2.5805 7 6 0.5742 4.8862 2.6972 8 6 2.6672 4.0629 3.6346 9 8 3.6605 3.3647 3.5710 10 6 2.3802 4.8284 4.8647 11 6 3.0947 4.7615 6.0842 12 6 2.4763 5.6339 6.9142 13 7 1.4486 6.1787 6.2282 14 6 0.5161 7.1727 6.7654 15 7 1.4061 5.6995 5.0370 16 6 1.9956 -0.7660 -1.1376 17 6 1.6371 -2.2204 -0.9729 18 8 1.0055 -2.5833 -0.0030 19 7 2.0182 -3.1180 -1.9032 20 6 1.6916 -4.4410 -1.7536 21 1 1.1293 -4.7641 -0.8900 22 6 2.0850 -5.3664 -2.7126 23 7 2.7697 -4.9734 -3.7631 24 14 1.6394 -7.1691 -2.5091 25 1 0.3274 -7.4305 -3.1535 26 1 2.6817 -8.0118 -3.1485 27 1 1.5551 -7.4980 -1.0634 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9273 -0.8309 32 1 3.0797 1.3445 -0.1083 33 1 2.0658 1.5016 2.1492 34 1 0.5472 2.0844 1.4265 35 1 1.7445 4.0417 0.4872 36 1 3.2635 3.4595 1.2095 37 1 0.7562 5.9417 2.4950 38 1 -0.1461 4.4972 1.9777 39 1 0.1775 4.7728 3.7061 40 1 3.9540 4.1458 6.3054 41 1 2.7507 5.8502 7.9361 42 1 -0.3323 6.6645 7.2237 43 1 1.0241 7.7798 7.5147 44 1 0.1627 7.8133 5.9574 45 1 1.5611 -0.3873 -2.0628 46 1 3.0798 -0.6610 -1.1756 47 1 2.5229 -2.8276 -2.6790 48 1 3.0439 -5.6194 -4.4326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755045400.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:39 Heat of formation + Delta-G solvation = 5.812626 kcal Electronic energy + Delta-G solvation = -28269.228297 eV Core-core repulsion = 24168.007890 eV Total energy + Delta-G solvation = -4101.220407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.59889 -40.72530 -40.33474 -38.23235 -36.78749 -35.87334 -34.47131 -33.31286 -33.03981 -31.64038 -29.49173 -28.63841 -28.04152 -27.19540 -26.46965 -24.65496 -22.98215 -22.33644 -21.81792 -20.98212 -20.29086 -19.83911 -18.40448 -17.89784 -17.65018 -17.29639 -17.02486 -16.65619 -16.59031 -16.44001 -15.97708 -15.79473 -15.35350 -15.08571 -14.86866 -14.72160 -14.53363 -14.11876 -13.97657 -13.73437 -13.57635 -13.47721 -13.36928 -13.32242 -13.07557 -12.91562 -12.84929 -12.69477 -12.50821 -12.39086 -12.33508 -12.11719 -11.74073 -11.52268 -11.44952 -11.20721 -10.28253 -10.20359 -10.07512 -9.99202 -9.66856 -9.15668 -8.45643 -5.94307 0.51879 1.19626 1.38065 1.41308 1.54506 1.59787 2.03495 2.06467 2.29478 2.33198 2.81958 3.21012 3.30376 3.44064 3.82609 3.97407 4.02559 4.11112 4.17323 4.32746 4.38996 4.41313 4.44204 4.46148 4.49948 4.54712 4.60614 4.61549 4.70402 4.71710 4.73944 4.76257 4.79500 4.83574 4.98611 5.11501 5.16490 5.28227 5.35596 5.41820 5.58408 5.90554 5.91395 6.10093 6.26120 6.29304 6.62264 6.83952 7.12126 7.14084 7.57542 8.14086 8.71863 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027631 B = 0.001644 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.129455 B =17025.310374 C =17232.995977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.546 5.546 3 C 0.063 3.937 4 C -0.118 4.118 5 C 0.122 3.878 6 N -0.604 5.604 7 C 0.087 3.913 8 C 0.590 3.410 9 O -0.575 6.575 10 C -0.050 4.050 11 C -0.211 4.211 12 C 0.002 3.998 13 N -0.282 5.282 14 C 0.075 3.925 15 N -0.263 5.263 16 C 0.059 3.941 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.275 1.275 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.155 0.845 41 H 0.226 0.774 42 H 0.099 0.901 43 H 0.127 0.873 44 H 0.102 0.898 45 H 0.071 0.929 46 H 0.106 0.894 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.772 31.757 17.120 36.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.271 5.271 3 C -0.065 4.065 4 C -0.157 4.157 5 C -0.001 4.001 6 N -0.335 5.335 7 C -0.055 4.055 8 C 0.378 3.622 9 O -0.453 6.453 10 C -0.208 4.208 11 C -0.240 4.240 12 C -0.141 4.141 13 N -0.071 5.071 14 C -0.063 4.063 15 N -0.101 5.101 16 C -0.072 4.072 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.200 1.200 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.173 0.827 41 H 0.242 0.758 42 H 0.118 0.882 43 H 0.146 0.854 44 H 0.120 0.880 45 H 0.089 0.911 46 H 0.124 0.876 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.449 31.438 17.482 36.382 hybrid contribution 0.643 -1.175 -0.693 1.508 sum -4.806 30.263 16.788 34.940 Atomic orbital electron populations 1.22407 0.86823 1.02073 1.00585 1.61454 1.09032 1.13997 1.42626 1.22076 1.00559 0.86754 0.97115 1.21790 1.01343 0.95282 0.97250 1.21515 1.01339 0.92182 0.85026 1.47807 1.21613 1.52253 1.11807 1.22050 0.83699 0.96035 1.03749 1.17415 0.82438 0.80061 0.82308 1.90776 1.29958 1.42094 1.82486 1.21820 0.99092 1.03025 0.96849 1.22004 1.04485 1.04857 0.92620 1.23423 0.91243 0.98034 1.01389 1.46072 1.22990 1.30708 1.07319 1.22640 0.92486 0.89662 1.01512 1.73658 1.21190 1.12248 1.03004 1.21728 1.01963 0.90156 0.93392 1.20821 0.83693 0.88871 0.83862 1.90458 1.45249 1.81481 1.33016 1.41930 1.50100 1.07040 1.22133 1.19662 1.34468 0.84117 1.08088 0.90452 1.26036 0.96230 1.04332 0.94668 1.69673 1.38082 1.37197 1.11183 0.84921 0.78298 0.76757 0.78290 1.19489 1.19464 1.19997 0.94676 0.92917 0.90663 0.92279 0.90420 0.94157 0.91107 0.86918 0.91016 0.91412 0.89473 0.90490 0.82714 0.75773 0.88213 0.85440 0.87968 0.91069 0.87573 0.77008 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 8.96 127.69 1.14 2.13 16 2 N -0.55 -19.34 4.50 -927.04 -4.17 -23.51 16 3 C 0.06 1.64 4.96 86.30 0.43 2.06 16 4 C -0.12 -2.98 5.46 30.60 0.17 -2.81 16 5 C 0.12 2.56 5.35 86.38 0.46 3.02 16 6 N -0.60 -13.63 2.87 -850.34 -2.44 -16.07 16 7 C 0.09 1.35 9.32 127.77 1.19 2.54 16 8 C 0.59 16.93 7.66 86.75 0.66 17.60 16 9 O -0.57 -20.96 16.57 -3.93 -0.07 -21.02 16 10 C -0.05 -1.20 6.76 42.45 0.29 -0.91 16 11 C -0.21 -4.22 10.81 22.41 0.24 -3.97 16 12 C 0.00 0.02 11.46 83.54 0.96 0.98 16 13 N -0.28 -3.15 3.70 -369.45 -1.37 -4.51 16 14 C 0.08 0.02 11.31 127.77 1.44 1.46 16 15 N -0.26 -4.76 8.74 -48.18 -0.42 -5.18 16 16 C 0.06 2.19 5.45 85.56 0.47 2.65 16 17 C 0.44 22.15 7.47 87.66 0.66 22.81 16 18 O -0.62 -35.82 13.91 -3.07 -0.04 -35.86 16 19 N -0.57 -30.76 5.29 -306.98 -1.62 -32.38 16 20 C -0.33 -19.63 9.68 84.04 0.81 -18.82 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 23 N -0.92 -50.88 13.05 21.66 0.28 -50.59 16 24 Si 0.99 44.21 29.55 68.60 2.03 46.24 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 28 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 2.24 5.83 -2.38 -0.01 2.23 16 30 H 0.07 2.26 6.47 -2.39 -0.02 2.24 16 31 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 32 H 0.08 1.99 7.93 -2.39 -0.02 1.97 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.67 6.55 -2.39 -0.02 1.66 16 35 H 0.11 1.58 8.07 -2.39 -0.02 1.56 16 36 H 0.07 1.73 7.50 -2.39 -0.02 1.71 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 1.02 8.04 -2.39 -0.02 1.00 16 39 H 0.08 1.32 5.91 -2.39 -0.01 1.30 16 40 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 41 H 0.23 0.27 8.06 -2.91 -0.02 0.24 16 42 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.13 -0.74 8.13 -2.39 -0.02 -0.76 16 44 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16 46 H 0.11 3.57 7.93 -2.39 -0.02 3.55 16 47 H 0.40 20.07 7.90 -92.71 -0.73 19.34 16 48 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -85.36 398.44 1.81 -83.56 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.24 Total: 30.85 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 9.39 Total: 28.49 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -9.74 Total: -132.25 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -0.11 Total: -56.88 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -85.36 1.81 -83.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755045400.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.368 kcal (2) G-P(sol) polarization free energy of solvation -85.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds