Wall clock time and date at job start Tue Mar 31 2020 21:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37362 * 125.82916 * 2 1 4 4 N 1.29397 * 108.82943 * 179.72271 * 3 2 1 5 5 N 1.40174 * 108.13918 * 0.38529 * 4 3 2 6 6 C 1.46502 * 126.34931 * 179.87051 * 5 4 3 7 7 C 1.50693 * 109.47552 * 269.68979 * 6 5 4 8 8 O 1.21284 * 120.00088 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00051 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00057 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47276 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.42889 * 64.92542 * 11 10 9 13 13 C 1.55407 * 109.70943 * 185.08153 * 11 10 9 14 14 C 1.47103 * 110.34767 * 191.29117 * 13 11 10 15 15 C 1.52564 * 114.32647 * 297.12330 * 14 13 11 16 16 C 1.50881 * 109.35499 * 85.01490 * 15 14 13 17 17 C 1.53945 * 110.09631 * 268.11553 * 16 15 14 18 18 N 1.44579 * 109.44455 * 304.99692 * 11 10 9 19 19 C 1.36931 * 118.64765 * 329.23759 * 18 11 10 20 20 H 1.08000 * 119.99894 * 328.87420 * 19 18 11 21 21 C 1.38817 * 120.00155 * 148.87156 * 19 18 11 22 22 N 1.31620 * 119.99636 * 140.01103 * 21 19 18 23 23 Si 1.86798 * 120.00152 * 320.01252 * 21 19 18 24 24 H 1.48494 * 109.47146 * 270.00014 * 23 21 19 25 25 H 1.48498 * 109.46902 * 149.99609 * 23 21 19 26 26 H 1.48505 * 109.46904 * 30.00192 * 23 21 19 27 27 C 1.34807 * 125.83630 * 179.97438 * 2 1 3 28 28 O 1.21816 * 126.30282 * 0.02782 * 27 2 1 29 29 H 1.08998 * 109.47630 * 270.02627 * 1 2 3 30 30 H 1.09005 * 109.46787 * 30.03356 * 1 2 3 31 31 H 1.09008 * 109.46347 * 150.02353 * 1 2 3 32 32 H 1.07999 * 125.58557 * 359.97347 * 3 2 1 33 33 H 1.09005 * 109.46810 * 149.68501 * 6 5 4 34 34 H 1.09005 * 109.46674 * 29.69601 * 6 5 4 35 35 H 0.96998 * 120.00392 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.47355 * 59.99636 * 10 9 7 37 37 H 1.09006 * 109.46747 * 300.00113 * 10 9 7 38 38 H 1.08998 * 109.38122 * 70.98841 * 13 11 10 39 39 H 1.09006 * 109.11962 * 311.43571 * 13 11 10 40 40 H 1.08990 * 108.51074 * 175.86463 * 14 13 11 41 41 H 1.09001 * 108.50728 * 58.37508 * 14 13 11 42 42 H 1.08997 * 109.49146 * 325.05357 * 15 14 13 43 43 H 1.08999 * 109.48584 * 204.98151 * 15 14 13 44 44 H 1.09003 * 109.36600 * 147.91621 * 16 15 14 45 45 H 1.09007 * 109.36796 * 28.30534 * 16 15 14 46 46 H 1.09005 * 108.94019 * 279.87368 * 17 16 15 47 47 H 1.08996 * 108.94607 * 161.24967 * 17 16 15 48 48 H 0.96998 * 120.00086 * 356.15978 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5065 0.7354 0.0059 5 7 3.5344 -0.6661 0.0010 6 6 4.7314 -1.5108 0.0024 7 6 5.1427 -1.8017 -1.4179 8 8 4.4995 -1.3477 -2.3405 9 7 6.2251 -2.5663 -1.6628 10 6 6.6253 -2.8486 -3.0436 11 6 7.8745 -3.7319 -3.0421 12 1 7.6327 -4.7014 -2.6064 13 6 8.3787 -3.9291 -4.4988 14 6 9.4053 -4.9816 -4.5467 15 6 10.6682 -4.6644 -3.7518 16 6 10.4640 -5.0595 -2.3100 17 6 9.9231 -3.8638 -1.5053 18 7 8.9115 -3.0977 -2.2594 19 6 8.9537 -1.7299 -2.2111 20 1 8.6188 -1.1490 -3.0578 21 6 9.4268 -1.0897 -1.0738 22 7 10.1888 -0.0226 -1.1882 23 14 8.9821 -1.7428 0.6189 24 1 7.7257 -1.1013 1.0826 25 1 10.0775 -1.4329 1.5725 26 1 8.7898 -3.2136 0.5471 27 6 2.2543 -1.0929 0.0005 28 8 1.8807 -2.2523 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5144 31 1 -0.3632 -0.8903 -0.5135 32 1 1.9249 2.1374 -0.0004 33 1 4.5149 -2.4469 0.5170 34 1 5.5411 -0.9926 0.5163 35 1 6.7393 -2.9297 -0.9250 36 1 6.8424 -1.9124 -3.5577 37 1 5.8154 -3.3661 -3.5579 38 1 8.8034 -2.9942 -4.8643 39 1 7.5387 -4.2155 -5.1317 40 1 9.6837 -5.1464 -5.5875 41 1 8.9738 -5.9038 -4.1575 42 1 10.8759 -3.5959 -3.8101 43 1 11.5083 -5.2217 -4.1662 44 1 11.4150 -5.3808 -1.8851 45 1 9.7509 -5.8823 -2.2582 46 1 10.7523 -3.2027 -1.2533 47 1 9.4733 -4.2321 -0.5833 48 1 10.4656 0.2838 -2.0658 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755365566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:20 Heat of formation + Delta-G solvation = 41.852737 kcal Electronic energy + Delta-G solvation = -30903.796869 eV Core-core repulsion = 26804.139279 eV Total energy + Delta-G solvation = -4099.657591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.35513 -39.30129 -38.16056 -37.16233 -35.26194 -34.55634 -33.51499 -32.13909 -31.60337 -31.24259 -28.58424 -27.41123 -26.46924 -25.43364 -23.37167 -22.78736 -22.11651 -21.26928 -20.21862 -19.66148 -19.41254 -17.72902 -17.35464 -16.82569 -16.13042 -16.10962 -15.75496 -15.51399 -15.27251 -14.91798 -14.52597 -14.34637 -14.11609 -13.88606 -13.70814 -13.29029 -13.05623 -12.93238 -12.88427 -12.46209 -12.43052 -12.15211 -12.12436 -11.90676 -11.78398 -11.34473 -11.23406 -10.71803 -10.46856 -10.41922 -10.20418 -10.17878 -10.11523 -10.10648 -9.95234 -9.57212 -9.40939 -9.19677 -8.47217 -8.38636 -8.18748 -6.99948 -6.38513 -3.29930 1.71733 2.02231 2.73098 3.06129 3.09908 3.34988 3.38682 3.55210 3.81736 4.40007 4.56555 4.68471 4.81656 4.92482 5.01043 5.14852 5.21850 5.28285 5.31510 5.32841 5.36558 5.46420 5.52747 5.75313 5.80706 5.82883 5.91393 5.98924 6.11470 6.21431 6.24490 6.39447 6.44284 6.50480 6.52192 6.54069 6.64690 6.67740 6.81794 6.92311 6.97872 7.03101 7.10676 7.65390 8.02267 8.11669 8.17263 8.45712 8.71096 9.00710 9.67134 10.19005 10.96431 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.003552 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.522701 B = 7881.915683 C = 8780.004082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.563 5.563 3 C 0.246 3.754 4 N -0.263 5.263 5 N -0.430 5.430 6 C 0.135 3.865 7 C 0.498 3.502 8 O -0.544 6.544 9 N -0.691 5.691 10 C 0.135 3.865 11 C 0.169 3.831 12 H 0.045 0.955 13 C -0.133 4.133 14 C -0.101 4.101 15 C -0.108 4.108 16 C -0.135 4.135 17 C 0.138 3.862 18 N -0.587 5.587 19 C -0.368 4.368 20 H 0.062 0.938 21 C 0.018 3.982 22 N -0.887 5.887 23 Si 0.991 3.009 24 H -0.294 1.294 25 H -0.293 1.293 26 H -0.268 1.268 27 C 0.652 3.348 28 O -0.557 6.557 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.230 0.770 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.401 0.599 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.043 0.957 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.064 0.936 47 H 0.026 0.974 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.508 -2.826 2.425 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.293 5.293 3 C -0.053 4.053 4 N -0.084 5.084 5 N -0.250 5.250 6 C 0.010 3.990 7 C 0.282 3.718 8 O -0.422 6.422 9 N -0.341 5.341 10 C 0.011 3.989 11 C 0.061 3.939 12 H 0.063 0.937 13 C -0.174 4.174 14 C -0.138 4.138 15 C -0.145 4.145 16 C -0.174 4.174 17 C 0.013 3.987 18 N -0.310 5.310 19 C -0.495 4.495 20 H 0.080 0.920 21 C -0.188 4.188 22 N -0.522 5.522 23 Si 0.821 3.179 24 H -0.222 1.222 25 H -0.219 1.219 26 H -0.194 1.194 27 C 0.351 3.649 28 O -0.431 6.431 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.247 0.753 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.236 0.764 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.044 0.956 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.010 -2.794 3.371 12.784 hybrid contribution -0.556 -0.476 -1.280 1.475 sum -12.567 -3.271 2.091 13.153 Atomic orbital electron populations 1.21771 0.74434 1.04630 1.03211 1.45831 1.08697 1.06703 1.68043 1.25904 0.85791 0.94649 0.98939 1.77071 1.18103 0.91665 1.21529 1.48197 1.05447 1.03079 1.68258 1.21378 0.85734 0.95134 0.96730 1.20570 0.81280 0.79042 0.90934 1.90664 1.54304 1.51563 1.45640 1.45578 1.27541 1.51058 1.09912 1.21447 0.95139 1.00249 0.82074 1.20700 0.87552 0.94141 0.91522 0.93738 1.21387 0.97778 0.99499 0.98693 1.20284 0.96185 0.98466 0.98914 1.20944 0.96074 1.02636 0.94863 1.21915 0.99880 0.99004 0.96615 1.21693 0.92027 0.92190 0.92778 1.43971 1.27487 1.03292 1.56295 1.19791 1.47967 0.81058 1.00731 0.92002 1.25977 0.95754 0.95791 1.01279 1.70859 1.26377 1.27852 1.27112 0.85041 0.77350 0.76421 0.79127 1.22228 1.21920 1.19403 1.16631 0.81939 0.85052 0.81263 1.91056 1.77738 1.15260 1.59072 0.91042 0.89447 0.89568 0.75346 0.86137 0.85361 0.76440 0.90980 0.92977 0.91684 0.93274 0.93916 0.93489 0.90516 0.93863 0.92809 0.93214 0.91801 0.95632 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 11.05 59.85 0.66 1.39 16 2 N -0.56 -6.85 3.14 -130.10 -0.41 -7.26 16 3 C 0.25 2.68 12.66 -89.12 -1.13 1.55 16 4 N -0.26 -4.16 12.53 29.87 0.37 -3.79 16 5 N -0.43 -7.55 3.11 -66.31 -0.21 -7.76 16 6 C 0.14 2.34 6.87 -5.20 -0.04 2.31 16 7 C 0.50 10.08 7.90 -10.99 -0.09 9.99 16 8 O -0.54 -12.75 16.43 5.55 0.09 -12.66 16 9 N -0.69 -13.41 4.72 -60.29 -0.28 -13.69 16 10 C 0.14 2.62 4.55 -4.04 -0.02 2.60 16 11 C 0.17 3.11 2.21 -67.68 -0.15 2.96 16 12 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 13 C -0.13 -2.24 5.09 -28.28 -0.14 -2.38 16 14 C -0.10 -1.55 5.16 -29.79 -0.15 -1.70 16 15 C -0.11 -1.76 5.51 -28.02 -0.15 -1.91 16 16 C -0.14 -2.21 5.71 -27.30 -0.16 -2.36 16 17 C 0.14 2.72 4.35 -2.94 -0.01 2.71 16 18 N -0.59 -12.28 1.44 -164.13 -0.24 -12.51 16 19 C -0.37 -9.14 7.57 -15.06 -0.11 -9.26 16 20 H 0.06 1.74 7.05 -52.49 -0.37 1.37 16 21 C 0.02 0.48 4.60 -17.43 -0.08 0.40 16 22 N -0.89 -25.62 13.70 55.49 0.76 -24.86 16 23 Si 0.99 22.54 25.97 -169.99 -4.41 18.12 16 24 H -0.29 -6.39 6.58 56.52 0.37 -6.02 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.27 -5.41 4.94 56.52 0.28 -5.13 16 27 C 0.65 11.16 8.60 -86.74 -0.75 10.42 16 28 O -0.56 -11.01 17.71 5.08 0.09 -10.92 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.72 8.08 -51.92 -0.42 0.30 16 32 H 0.23 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.76 8.11 -51.93 -0.42 1.34 16 34 H 0.13 2.16 7.61 -51.93 -0.40 1.76 16 35 H 0.40 7.51 6.46 -40.82 -0.26 7.25 16 36 H 0.07 1.60 6.90 -51.93 -0.36 1.24 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.68 7.37 -51.93 -0.38 0.29 16 42 H 0.08 1.49 7.48 -51.93 -0.39 1.10 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.76 7.32 -51.93 -0.38 0.38 16 46 H 0.06 1.41 6.81 -51.93 -0.35 1.05 16 47 H 0.03 0.51 5.82 -51.93 -0.30 0.20 16 48 H 0.27 7.84 8.73 -40.82 -0.36 7.48 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -35.19 378.17 -8.41 -43.60 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -7.56 Total: 9.32 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: -2.32 Total: 16.71 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: 0.00 Total: -69.87 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.18 Total: -23.58 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.41 Total: 18.12 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.19 -8.41 -43.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755365566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.453 kcal (2) G-P(sol) polarization free energy of solvation -35.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds