Wall clock time and date at job start Tue Mar 31 2020 21:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37362 * 125.82916 * 2 1 4 4 N 1.29397 * 108.82943 * 179.72271 * 3 2 1 5 5 N 1.40174 * 108.13918 * 0.38529 * 4 3 2 6 6 C 1.46502 * 126.34931 * 179.87051 * 5 4 3 7 7 C 1.50693 * 109.47552 * 269.68979 * 6 5 4 8 8 O 1.21284 * 120.00088 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00051 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00057 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47276 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.42889 * 64.92542 * 11 10 9 13 13 C 1.55407 * 109.70943 * 185.08153 * 11 10 9 14 14 C 1.47103 * 110.34767 * 191.29117 * 13 11 10 15 15 C 1.52564 * 114.32647 * 297.12330 * 14 13 11 16 16 C 1.50881 * 109.35499 * 85.01490 * 15 14 13 17 17 C 1.53945 * 110.09631 * 268.11553 * 16 15 14 18 18 N 1.44579 * 109.44455 * 304.99692 * 11 10 9 19 19 C 1.36931 * 118.64765 * 329.23759 * 18 11 10 20 20 H 1.08000 * 119.99894 * 328.87420 * 19 18 11 21 21 C 1.38817 * 120.00155 * 148.87156 * 19 18 11 22 22 N 1.31620 * 119.99636 * 140.01103 * 21 19 18 23 23 Si 1.86798 * 120.00152 * 320.01252 * 21 19 18 24 24 H 1.48494 * 109.47146 * 270.00014 * 23 21 19 25 25 H 1.48498 * 109.46902 * 149.99609 * 23 21 19 26 26 H 1.48505 * 109.46904 * 30.00192 * 23 21 19 27 27 C 1.34807 * 125.83630 * 179.97438 * 2 1 3 28 28 O 1.21816 * 126.30282 * 0.02782 * 27 2 1 29 29 H 1.08998 * 109.47630 * 270.02627 * 1 2 3 30 30 H 1.09005 * 109.46787 * 30.03356 * 1 2 3 31 31 H 1.09008 * 109.46347 * 150.02353 * 1 2 3 32 32 H 1.07999 * 125.58557 * 359.97347 * 3 2 1 33 33 H 1.09005 * 109.46810 * 149.68501 * 6 5 4 34 34 H 1.09005 * 109.46674 * 29.69601 * 6 5 4 35 35 H 0.96998 * 120.00392 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.47355 * 59.99636 * 10 9 7 37 37 H 1.09006 * 109.46747 * 300.00113 * 10 9 7 38 38 H 1.08998 * 109.38122 * 70.98841 * 13 11 10 39 39 H 1.09006 * 109.11962 * 311.43571 * 13 11 10 40 40 H 1.08990 * 108.51074 * 175.86463 * 14 13 11 41 41 H 1.09001 * 108.50728 * 58.37508 * 14 13 11 42 42 H 1.08997 * 109.49146 * 325.05357 * 15 14 13 43 43 H 1.08999 * 109.48584 * 204.98151 * 15 14 13 44 44 H 1.09003 * 109.36600 * 147.91621 * 16 15 14 45 45 H 1.09007 * 109.36796 * 28.30534 * 16 15 14 46 46 H 1.09005 * 108.94019 * 279.87368 * 17 16 15 47 47 H 1.08996 * 108.94607 * 161.24967 * 17 16 15 48 48 H 0.96998 * 120.00086 * 356.15978 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5065 0.7354 0.0059 5 7 3.5344 -0.6661 0.0010 6 6 4.7314 -1.5108 0.0024 7 6 5.1427 -1.8017 -1.4179 8 8 4.4995 -1.3477 -2.3405 9 7 6.2251 -2.5663 -1.6628 10 6 6.6253 -2.8486 -3.0436 11 6 7.8745 -3.7319 -3.0421 12 1 7.6327 -4.7014 -2.6064 13 6 8.3787 -3.9291 -4.4988 14 6 9.4053 -4.9816 -4.5467 15 6 10.6682 -4.6644 -3.7518 16 6 10.4640 -5.0595 -2.3100 17 6 9.9231 -3.8638 -1.5053 18 7 8.9115 -3.0977 -2.2594 19 6 8.9537 -1.7299 -2.2111 20 1 8.6188 -1.1490 -3.0578 21 6 9.4268 -1.0897 -1.0738 22 7 10.1888 -0.0226 -1.1882 23 14 8.9821 -1.7428 0.6189 24 1 7.7257 -1.1013 1.0826 25 1 10.0775 -1.4329 1.5725 26 1 8.7898 -3.2136 0.5471 27 6 2.2543 -1.0929 0.0005 28 8 1.8807 -2.2523 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5144 31 1 -0.3632 -0.8903 -0.5135 32 1 1.9249 2.1374 -0.0004 33 1 4.5149 -2.4469 0.5170 34 1 5.5411 -0.9926 0.5163 35 1 6.7393 -2.9297 -0.9250 36 1 6.8424 -1.9124 -3.5577 37 1 5.8154 -3.3661 -3.5579 38 1 8.8034 -2.9942 -4.8643 39 1 7.5387 -4.2155 -5.1317 40 1 9.6837 -5.1464 -5.5875 41 1 8.9738 -5.9038 -4.1575 42 1 10.8759 -3.5959 -3.8101 43 1 11.5083 -5.2217 -4.1662 44 1 11.4150 -5.3808 -1.8851 45 1 9.7509 -5.8823 -2.2582 46 1 10.7523 -3.2027 -1.2533 47 1 9.4733 -4.2321 -0.5833 48 1 10.4656 0.2838 -2.0658 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755365566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:18 Heat of formation + Delta-G solvation = 17.805448 kcal Electronic energy + Delta-G solvation = -30904.839638 eV Core-core repulsion = 26804.139279 eV Total energy + Delta-G solvation = -4100.700359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.44676 -40.89058 -39.69759 -38.43401 -36.39551 -36.03948 -35.28451 -33.54868 -33.12289 -32.76698 -29.86758 -28.62332 -27.70262 -26.89925 -25.08509 -24.07337 -23.42110 -22.44792 -21.76354 -21.10484 -21.03387 -19.15368 -18.64328 -18.42644 -17.41100 -17.31837 -17.17248 -16.95131 -16.60860 -16.33274 -16.03734 -15.70235 -15.52442 -15.42941 -14.95956 -14.69761 -14.45259 -14.30914 -14.18302 -13.69360 -13.60067 -13.56489 -13.49090 -13.37623 -12.91162 -12.88532 -12.82166 -12.46714 -12.11013 -11.76116 -11.64106 -11.59399 -11.46963 -11.43002 -11.36539 -11.27318 -10.92505 -10.69725 -10.22726 -10.00199 -9.69334 -8.90129 -8.42610 -5.32958 0.62503 1.07972 1.46236 1.51082 1.53186 1.54934 1.71931 2.11488 2.38332 2.65892 2.99027 3.41148 3.44431 3.67273 3.94006 3.98630 4.00783 4.06086 4.06601 4.18476 4.31611 4.36536 4.38502 4.49458 4.52096 4.53322 4.70697 4.78331 4.84669 4.87689 4.94040 4.97272 4.98966 5.13407 5.13544 5.19110 5.33728 5.40439 5.46959 5.51537 5.55984 5.65656 5.68276 6.04893 6.38567 6.48686 6.58606 6.89255 7.03684 7.14110 7.81254 8.22171 8.86058 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.003552 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.522701 B = 7881.915683 C = 8780.004082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.557 5.557 3 C 0.279 3.721 4 N -0.322 5.322 5 N -0.445 5.445 6 C 0.137 3.863 7 C 0.493 3.507 8 O -0.583 6.583 9 N -0.687 5.687 10 C 0.139 3.861 11 C 0.170 3.830 12 H 0.075 0.925 13 C -0.126 4.126 14 C -0.100 4.100 15 C -0.106 4.106 16 C -0.127 4.127 17 C 0.134 3.866 18 N -0.592 5.592 19 C -0.334 4.334 20 H 0.014 0.986 21 C -0.034 4.034 22 N -0.933 5.933 23 Si 1.028 2.972 24 H -0.279 1.279 25 H -0.310 1.310 26 H -0.222 1.222 27 C 0.634 3.366 28 O -0.596 6.596 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.070 0.930 32 H 0.292 0.708 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.406 0.594 36 H 0.032 0.968 37 H 0.067 0.933 38 H 0.029 0.971 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.033 0.967 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.033 0.967 47 H 0.039 0.961 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.443 -4.921 3.440 15.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.285 5.285 3 C -0.018 4.018 4 N -0.143 5.143 5 N -0.263 5.263 6 C 0.011 3.989 7 C 0.278 3.722 8 O -0.463 6.463 9 N -0.337 5.337 10 C 0.015 3.985 11 C 0.062 3.938 12 H 0.093 0.907 13 C -0.167 4.167 14 C -0.138 4.138 15 C -0.144 4.144 16 C -0.166 4.166 17 C 0.009 3.991 18 N -0.316 5.316 19 C -0.463 4.463 20 H 0.031 0.969 21 C -0.233 4.233 22 N -0.572 5.572 23 Si 0.854 3.146 24 H -0.206 1.206 25 H -0.238 1.238 26 H -0.146 1.146 27 C 0.334 3.666 28 O -0.473 6.473 29 H 0.111 0.889 30 H 0.148 0.852 31 H 0.089 0.911 32 H 0.307 0.693 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.242 0.758 36 H 0.050 0.950 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.989 -4.914 4.383 15.461 hybrid contribution -0.034 0.256 -1.741 1.760 sum -14.023 -4.658 2.642 15.011 Atomic orbital electron populations 1.22200 0.71415 1.05988 1.05101 1.46127 1.10282 1.05623 1.66457 1.27154 0.84218 0.96271 0.94178 1.77074 1.21020 0.90619 1.25539 1.48281 1.05467 1.04068 1.68533 1.21384 0.86393 0.96553 0.94526 1.21184 0.80808 0.78192 0.91990 1.90627 1.55543 1.53003 1.47157 1.45598 1.27345 1.50826 1.09963 1.21388 0.96287 0.98705 0.82133 1.20867 0.86164 0.94604 0.92143 0.90744 1.21324 0.99028 0.98656 0.97671 1.20273 0.95087 0.98420 0.99995 1.20919 0.97647 1.00191 0.95635 1.21854 1.01319 0.97725 0.95708 1.21757 0.90761 0.92787 0.93760 1.43972 1.28988 1.01861 1.56750 1.19388 1.45440 0.82943 0.98532 0.96855 1.26981 0.95701 0.95753 1.04880 1.71008 1.29952 1.30559 1.25688 0.84604 0.76941 0.78884 0.74182 1.20631 1.23796 1.14642 1.16984 0.82437 0.85705 0.81520 1.91002 1.78414 1.16978 1.60922 0.88925 0.85164 0.91139 0.69302 0.83718 0.85145 0.75845 0.94991 0.91506 0.95258 0.91105 0.92337 0.91043 0.94815 0.91554 0.90930 0.90721 0.94882 0.94354 0.94118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 11.05 127.77 1.41 2.46 16 2 N -0.56 -12.35 3.14 -683.68 -2.15 -14.50 16 3 C 0.28 5.28 12.66 179.82 2.28 7.56 16 4 N -0.32 -9.86 12.53 -59.42 -0.74 -10.61 16 5 N -0.45 -15.52 3.11 -481.78 -1.50 -17.02 16 6 C 0.14 4.72 6.87 85.63 0.59 5.31 16 7 C 0.49 20.21 7.90 87.66 0.69 20.90 16 8 O -0.58 -28.11 16.43 -3.04 -0.05 -28.16 16 9 N -0.69 -26.59 4.72 -463.05 -2.19 -28.78 16 10 C 0.14 5.45 4.55 86.38 0.39 5.84 16 11 C 0.17 6.01 2.21 46.18 0.10 6.12 16 12 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 13 C -0.13 -4.12 5.09 29.59 0.15 -3.97 16 14 C -0.10 -2.77 5.16 28.62 0.15 -2.62 16 15 C -0.11 -3.24 5.51 29.76 0.16 -3.08 16 16 C -0.13 -3.73 5.71 30.22 0.17 -3.55 16 17 C 0.13 5.04 4.35 86.49 0.38 5.42 16 18 N -0.59 -24.63 1.44 -673.18 -0.97 -25.59 16 19 C -0.33 -17.35 7.57 84.04 0.64 -16.71 16 20 H 0.01 0.83 7.05 -2.91 -0.02 0.81 16 21 C -0.03 -1.86 4.60 84.86 0.39 -1.47 16 22 N -0.93 -57.16 13.70 21.65 0.30 -56.87 16 23 Si 1.03 45.73 25.97 68.60 1.78 47.51 16 24 H -0.28 -11.65 6.58 99.48 0.65 -11.00 16 25 H -0.31 -14.76 7.11 99.48 0.71 -14.05 16 26 H -0.22 -8.16 4.94 99.48 0.49 -7.67 16 27 C 0.63 21.42 8.60 178.99 1.54 22.96 16 28 O -0.60 -23.64 17.71 -4.72 -0.08 -23.73 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.13 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.07 1.07 8.08 -2.38 -0.02 1.05 16 32 H 0.29 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.15 4.12 8.11 -2.38 -0.02 4.10 16 34 H 0.13 4.36 7.61 -2.38 -0.02 4.34 16 35 H 0.41 14.66 6.46 -92.71 -0.60 14.06 16 36 H 0.03 1.50 6.90 -2.39 -0.02 1.49 16 37 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 38 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 2.01 8.11 -2.38 -0.02 1.99 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.07 1.69 7.37 -2.39 -0.02 1.67 16 42 H 0.03 1.31 7.48 -2.39 -0.02 1.29 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.07 1.87 7.32 -2.38 -0.02 1.85 16 46 H 0.03 1.45 6.81 -2.38 -0.02 1.43 16 47 H 0.04 1.37 5.82 -2.39 -0.01 1.35 16 48 H 0.25 15.72 8.73 -92.71 -0.81 14.91 16 Total: -1.00 -85.40 378.17 3.51 -81.89 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.07 Total: 30.68 kcal Atomic # 6 Polarization: 36.12 SS G_CDS: 9.04 Total: 45.16 kcal Atomic # 7 Polarization: -146.11 SS G_CDS: -7.25 Total: -153.36 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -0.13 Total: -51.88 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.78 Total: 47.51 kcal Total: -85.40 3.51 -81.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755365566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.695 kcal (2) G-P(sol) polarization free energy of solvation -85.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds