Wall clock time and date at job start Tue Mar 31 2020 21:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35495 * 126.98340 * 2 1 4 4 N 1.30520 * 107.30888 * 179.73983 * 3 2 1 5 5 N 1.28595 * 109.67181 * 359.97438 * 4 3 2 6 6 C 1.30528 * 109.67405 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.34540 * 179.97438 * 6 5 4 8 8 O 1.42902 * 109.47060 * 269.99891 * 7 6 5 9 9 C 1.42903 * 114.00035 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47124 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99666 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99818 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99789 * 180.02562 * 12 10 9 14 14 H 1.08997 * 110.67072 * 31.76131 * 13 12 10 15 15 C 1.54892 * 110.75539 * 268.32775 * 13 12 10 16 16 C 1.54261 * 104.19763 * 203.74433 * 15 13 12 17 17 C 1.53876 * 106.59859 * 23.60876 * 16 15 13 18 18 H 1.09000 * 110.07461 * 240.69688 * 17 16 15 19 19 C 1.52996 * 110.03336 * 119.28457 * 17 16 15 20 20 N 1.46504 * 109.46828 * 67.83371 * 19 17 16 21 21 C 1.36936 * 119.99674 * 179.97438 * 20 19 17 22 22 H 1.07995 * 120.00390 * 0.02562 * 21 20 19 23 23 C 1.38820 * 119.99856 * 180.02562 * 21 20 19 24 24 N 1.31613 * 119.99753 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00005 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47083 * 89.99913 * 25 23 21 27 27 H 1.48492 * 109.46839 * 209.99858 * 25 23 21 28 28 H 1.48504 * 109.46815 * 329.99886 * 25 23 21 29 29 C 1.54267 * 106.59678 * 0.02562 * 17 16 15 30 30 H 1.08993 * 109.47075 * 90.02317 * 1 2 3 31 31 H 1.08993 * 109.47609 * 210.03067 * 1 2 3 32 32 H 1.09008 * 109.46926 * 330.02896 * 1 2 3 33 33 H 1.07998 * 126.34230 * 359.69771 * 3 2 1 34 34 H 1.09000 * 109.47200 * 29.99750 * 7 6 5 35 35 H 1.08996 * 109.46762 * 150.00004 * 7 6 5 36 36 H 1.08996 * 109.46973 * 300.00339 * 9 8 7 37 37 H 1.09003 * 109.46456 * 59.99954 * 9 8 7 38 38 H 0.97002 * 120.00108 * 0.02562 * 12 10 9 39 39 H 1.09005 * 110.48714 * 322.42332 * 15 13 12 40 40 H 1.09001 * 110.48741 * 85.06318 * 15 13 12 41 41 H 1.09005 * 110.03145 * 264.33021 * 16 15 13 42 42 H 1.08999 * 110.07619 * 142.91701 * 16 15 13 43 43 H 1.09002 * 109.47392 * 187.83422 * 19 17 16 44 44 H 1.09002 * 109.47280 * 307.83739 * 19 17 16 45 45 H 0.96993 * 120.00407 * 0.02562 * 20 19 17 46 46 H 0.97003 * 119.99984 * 180.02562 * 24 23 21 47 47 H 1.08999 * 110.48704 * 217.70806 * 29 17 16 48 48 H 1.09001 * 110.48696 * 95.06676 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 0.0057 5 7 3.5090 -0.6430 0.0097 6 6 2.2799 -1.0824 0.0063 7 6 1.8475 -2.5261 0.0086 8 8 1.7159 -2.9860 -1.3380 9 6 1.3070 -4.3508 -1.4486 10 6 1.2017 -4.7272 -2.9041 11 8 1.4525 -3.9075 -3.7620 12 7 0.8287 -5.9746 -3.2522 13 6 0.7268 -6.3407 -4.6671 14 1 1.4564 -5.7897 -5.2605 15 6 -0.7096 -6.1001 -5.1942 16 6 -0.8326 -7.0492 -6.4041 17 6 0.1960 -8.1730 -6.1874 18 1 0.9189 -8.1810 -7.0032 19 6 -0.5149 -9.5253 -6.1044 20 7 -1.0854 -9.8581 -7.4121 21 6 -1.7727 -11.0304 -7.5809 22 1 -1.8946 -11.7094 -6.7500 23 6 -2.3128 -11.3461 -8.8201 24 7 -2.1647 -10.5184 -9.8327 25 14 -3.2511 -12.9449 -9.0502 26 1 -4.6896 -12.7212 -8.7575 27 1 -3.0978 -13.4114 -10.4516 28 1 -2.7115 -13.9731 -8.1244 29 6 0.9076 -7.8679 -4.8531 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3634 -0.8896 0.5143 32 1 -0.3633 0.8903 0.5134 33 1 1.9702 2.1169 -0.0046 34 1 2.5939 -3.1281 0.5268 35 1 0.8888 -2.6173 0.5190 36 1 2.0418 -4.9909 -0.9604 37 1 0.3370 -4.4794 -0.9685 38 1 0.6277 -6.6301 -2.5659 39 1 -1.4442 -6.3577 -4.4311 40 1 -0.8321 -5.0636 -5.5085 41 1 -0.6089 -6.5109 -7.3252 42 1 -1.8381 -7.4673 -6.4510 43 1 0.2005 -10.2946 -5.8136 44 1 -1.3123 -9.4717 -5.3632 45 1 -0.9756 -9.2485 -8.1585 46 1 -2.5424 -10.7387 -10.6985 47 1 1.9657 -8.1212 -4.9184 48 1 0.4341 -8.4111 -4.0353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755747972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:45 Heat of formation + Delta-G solvation = -19.257445 kcal Electronic energy + Delta-G solvation = -27900.687224 eV Core-core repulsion = 23798.379697 eV Total energy + Delta-G solvation = -4102.307527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.14580 -41.06177 -39.50955 -38.51790 -36.42384 -36.02226 -34.84117 -33.00601 -32.66913 -30.26065 -29.96135 -28.70315 -28.25973 -27.05211 -25.96294 -23.94604 -23.42046 -22.13977 -21.93885 -21.66341 -20.47706 -19.09532 -18.58483 -18.17751 -17.86780 -17.37986 -17.29423 -16.91905 -16.55136 -16.43325 -16.16096 -15.93616 -15.42179 -15.20350 -15.10237 -14.69075 -14.43507 -14.30904 -14.21574 -13.67012 -13.39436 -13.30091 -13.21113 -12.99817 -12.89148 -12.78943 -12.59022 -12.48583 -12.16340 -12.08940 -11.83636 -11.70774 -11.51453 -11.45298 -11.27750 -11.15981 -10.90952 -10.89801 -10.83535 -10.44536 -10.05378 -8.96856 -7.93476 -5.21915 0.62198 1.48029 1.49867 1.51338 1.58354 1.59334 1.68700 1.98676 2.57481 2.90334 3.40257 3.43663 3.58078 3.64199 3.69605 3.80669 3.84969 3.90076 3.94692 4.18192 4.22032 4.26481 4.32981 4.39209 4.39997 4.47954 4.52329 4.58449 4.61957 4.69487 4.69629 4.80109 4.87877 4.93179 5.01874 5.08883 5.15293 5.17969 5.26675 5.42030 5.49129 5.53540 5.59146 5.84627 5.93210 6.28891 6.60214 7.28324 7.35001 7.64011 8.13319 8.35193 9.30259 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.037860 B = 0.001475 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.384154 B =18980.809037 C =19103.025429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.466 5.466 3 C 0.167 3.833 4 N -0.353 5.353 5 N -0.327 5.327 6 C 0.164 3.836 7 C 0.150 3.850 8 O -0.397 6.397 9 C 0.049 3.951 10 C 0.507 3.493 11 O -0.581 6.581 12 N -0.702 5.702 13 C 0.147 3.853 14 H 0.074 0.926 15 C -0.121 4.121 16 C -0.113 4.113 17 C -0.091 4.091 18 H 0.060 0.940 19 C 0.160 3.840 20 N -0.747 5.747 21 C -0.245 4.245 22 H 0.078 0.922 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.974 3.026 26 H -0.287 1.287 27 H -0.297 1.297 28 H -0.268 1.268 29 C -0.105 4.105 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.263 0.737 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.421 0.579 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.021 0.979 44 H 0.026 0.974 45 H 0.373 0.627 46 H 0.250 0.750 47 H 0.082 0.918 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.171 19.127 29.091 34.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.156 5.156 3 C -0.122 4.122 4 N -0.192 5.192 5 N -0.169 5.169 6 C -0.105 4.105 7 C 0.072 3.928 8 O -0.315 6.315 9 C -0.030 4.030 10 C 0.294 3.706 11 O -0.460 6.460 12 N -0.356 5.356 13 C 0.042 3.958 14 H 0.092 0.908 15 C -0.159 4.159 16 C -0.151 4.151 17 C -0.110 4.110 18 H 0.079 0.921 19 C 0.034 3.966 20 N -0.389 5.389 21 C -0.376 4.376 22 H 0.096 0.904 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.803 3.197 26 H -0.214 1.214 27 H -0.224 1.224 28 H -0.193 1.193 29 C -0.143 4.143 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.279 0.721 34 H 0.120 0.880 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.145 0.855 38 H 0.260 0.740 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.044 0.956 45 H 0.204 0.796 46 H 0.059 0.941 47 H 0.100 0.900 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.791 19.646 28.412 34.750 hybrid contribution -1.850 -0.786 -0.917 2.209 sum 1.941 18.860 27.495 33.398 Atomic orbital electron populations 1.22568 0.72085 1.07781 1.05446 1.46477 1.11064 1.05703 1.52341 1.27320 0.86199 0.96767 1.01897 1.74165 1.20962 1.03279 1.20817 1.74141 1.19477 1.04108 1.19183 1.24838 0.87188 0.93261 1.05238 1.20782 1.03514 0.84314 0.84181 1.88032 1.89935 1.27251 1.26266 1.22434 1.04522 0.83760 0.92294 1.20995 0.75805 0.82018 0.91809 1.90748 1.50485 1.51105 1.53664 1.45693 1.68988 1.12554 1.08323 1.21788 0.96676 0.95629 0.81751 0.90762 1.22627 0.97108 0.98585 0.97610 1.22031 0.99295 0.95838 0.97937 1.21776 0.96811 0.94202 0.98261 0.92108 1.20918 0.94573 0.93976 0.87118 1.42621 1.65056 1.22359 1.08894 1.19679 1.25254 0.97305 0.95402 0.90444 1.25585 1.03394 1.02110 0.95914 1.69827 1.52006 1.38826 1.01545 0.85132 0.78410 0.79603 0.76577 1.21397 1.22407 1.19261 1.22500 1.01391 0.93441 0.96996 0.89652 0.87036 0.85722 0.72092 0.88036 0.86685 0.86449 0.85512 0.74050 0.89939 0.92671 0.93124 0.92671 0.96093 0.95579 0.79582 0.94123 0.89968 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.07 11.05 127.77 1.41 1.48 16 2 N -0.47 -5.50 3.15 -542.08 -1.71 -7.20 16 3 C 0.17 2.33 12.74 180.11 2.30 4.62 16 4 N -0.35 -8.77 12.21 -59.99 -0.73 -9.51 16 5 N -0.33 -8.69 12.21 -50.15 -0.61 -9.31 16 6 C 0.16 2.94 7.66 137.98 1.06 4.00 16 7 C 0.15 1.54 6.29 71.24 0.45 1.99 16 8 O -0.40 -6.90 9.86 -129.94 -1.28 -8.18 16 9 C 0.05 0.47 6.42 71.24 0.46 0.92 16 10 C 0.51 9.94 7.91 87.66 0.69 10.64 16 11 O -0.58 -18.89 16.14 16.01 0.26 -18.63 16 12 N -0.70 -10.57 5.18 -436.40 -2.26 -12.83 16 13 C 0.15 3.18 3.27 46.29 0.15 3.34 16 14 H 0.07 2.01 7.55 -2.39 -0.02 2.00 16 15 C -0.12 -2.93 6.51 31.67 0.21 -2.73 16 16 C -0.11 -3.47 6.19 31.32 0.19 -3.27 16 17 C -0.09 -2.76 2.96 -10.07 -0.03 -2.79 16 18 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 19 C 0.16 6.06 5.27 86.38 0.46 6.52 16 20 N -0.75 -37.69 5.39 -343.44 -1.85 -39.54 16 21 C -0.24 -13.59 9.99 84.04 0.84 -12.75 16 22 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 23 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 24 N -0.97 -59.91 13.06 21.65 0.28 -59.62 16 25 Si 0.97 45.92 29.55 68.60 2.03 47.94 16 26 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 29 C -0.10 -2.19 5.98 31.68 0.19 -2.00 16 30 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.11 -0.32 7.19 -2.39 -0.02 -0.34 16 32 H 0.12 -0.59 8.14 -2.38 -0.02 -0.61 16 33 H 0.26 0.77 8.06 -2.91 -0.02 0.75 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.12 0.10 7.21 -2.39 -0.02 0.09 16 36 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.42 2.87 8.57 -92.71 -0.79 2.07 16 39 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.05 1.95 7.61 -2.39 -0.02 1.94 16 43 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.37 20.27 7.55 -92.71 -0.70 19.57 16 46 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 47 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.10 1.61 7.73 -2.39 -0.02 1.59 16 Total: -1.00 -93.71 401.11 2.45 -91.27 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -0.51 Total: 19.66 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 8.83 Total: 5.95 kcal Atomic # 7 Polarization: -131.13 SS G_CDS: -6.88 Total: -138.01 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.02 Total: -26.81 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -93.71 2.45 -91.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755747972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.010 kcal (2) G-P(sol) polarization free energy of solvation -93.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds