Wall clock time and date at job start Tue Mar 31 2020 21:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 120.00326 * 2 1 4 4 H 1.07990 * 120.00250 * 200.36684 * 3 2 1 5 5 C 1.38818 * 119.99576 * 20.35931 * 3 2 1 6 6 N 1.31618 * 119.99994 * 14.99864 * 5 3 2 7 7 Si 1.86798 * 119.99536 * 194.99974 * 5 3 2 8 8 H 1.48494 * 109.47316 * 85.00334 * 7 5 3 9 9 H 1.48509 * 109.46960 * 205.00487 * 7 5 3 10 10 H 1.48496 * 109.47212 * 324.99867 * 7 5 3 11 11 C 1.46496 * 120.00037 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.47697 * 270.00367 * 11 2 1 13 13 H 1.08999 * 109.46280 * 305.00203 * 12 11 2 14 14 O 1.42902 * 109.46993 * 64.99720 * 12 11 2 15 15 C 1.52994 * 109.47502 * 184.99874 * 12 11 2 16 16 N 1.46498 * 109.47353 * 179.97438 * 15 12 11 17 17 C 1.46493 * 120.00255 * 270.00223 * 16 15 12 18 18 C 1.34777 * 119.99492 * 90.00098 * 16 15 12 19 19 O 1.21286 * 120.00541 * 359.97438 * 18 16 15 20 20 C 1.50702 * 119.99864 * 180.02562 * 18 16 15 21 21 N 1.46497 * 109.47207 * 180.02562 * 20 18 16 22 22 C 1.35309 * 125.87265 * 124.99903 * 21 20 18 23 23 C 1.35350 * 106.17943 * 180.24861 * 22 21 20 24 24 C 1.50693 * 126.75351 * 179.77813 * 23 22 21 25 25 C 1.53002 * 117.50067 * 343.61782 * 24 23 22 26 26 C 1.52998 * 60.00158 * 252.50872 * 25 24 23 27 27 N 1.33773 * 106.49332 * 359.63939 * 23 22 21 28 28 N 1.28630 * 108.88934 * 0.37056 * 27 23 22 29 29 H 1.09006 * 109.46894 * 275.10839 * 1 2 3 30 30 H 1.08997 * 109.47038 * 35.10889 * 1 2 3 31 31 H 1.09001 * 109.47039 * 155.10869 * 1 2 3 32 32 H 0.97005 * 119.99391 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.47125 * 149.99827 * 11 2 1 34 34 H 1.08999 * 109.47287 * 30.00195 * 11 2 1 35 35 H 0.96699 * 114.00137 * 59.99995 * 14 12 11 36 36 H 1.09005 * 109.46760 * 59.99500 * 15 12 11 37 37 H 1.08995 * 109.46959 * 300.00123 * 15 12 11 38 38 H 1.08996 * 109.47122 * 269.99831 * 17 16 15 39 39 H 1.09003 * 109.47281 * 29.99846 * 17 16 15 40 40 H 1.09005 * 109.46889 * 149.99641 * 17 16 15 41 41 H 1.08998 * 109.46953 * 59.99787 * 20 18 16 42 42 H 1.08994 * 109.46718 * 299.99514 * 20 18 16 43 43 H 1.07998 * 126.91102 * 359.97438 * 22 21 20 44 44 H 1.08999 * 115.55336 * 129.32398 * 24 23 22 45 45 H 1.09005 * 117.49432 * 0.02562 * 25 24 23 46 46 H 1.08993 * 117.50094 * 145.02128 * 25 24 23 47 47 H 1.08991 * 117.50291 * 252.50687 * 26 25 24 48 48 H 1.09000 * 117.51986 * 107.47445 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1791 1.2151 -0.3255 5 6 1.5207 2.3505 0.4183 6 7 0.3877 2.2836 1.0846 7 14 2.2824 4.0126 0.0353 8 1 1.8681 4.4458 -1.3233 9 1 1.8224 5.0100 1.0348 10 1 3.7624 3.9034 0.0902 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7099 1.4433 13 1 2.9642 -0.9123 1.9819 14 8 1.2060 -1.9928 2.0822 15 6 3.3238 -2.9675 1.4456 16 7 3.5684 -3.3896 2.8270 17 6 4.7331 -2.8784 3.5538 18 6 2.7219 -4.2482 3.4291 19 8 1.7573 -4.6711 2.8276 20 6 2.9731 -4.6820 4.8503 21 7 1.9202 -5.6095 5.2712 22 6 2.1113 -6.8541 5.7665 23 6 0.8786 -7.3542 6.0161 24 6 0.5539 -8.7160 6.5737 25 6 1.6578 -9.7748 6.5400 26 6 0.4664 -9.8813 5.5861 27 7 0.0054 -6.4005 5.6734 28 7 0.6540 -5.3807 5.2330 29 1 -0.3633 0.0915 1.0237 30 1 -0.3633 0.8407 -0.5910 31 1 -0.3633 -0.9322 -0.4325 32 1 -0.0520 3.0975 1.3765 33 1 3.1500 -1.1386 -0.5134 34 1 1.6085 -2.0286 -0.5129 35 1 0.6955 -2.6943 1.6553 36 1 4.2746 -2.7517 0.9581 37 1 2.8121 -3.7650 0.9069 38 1 5.5820 -3.5429 3.3931 39 1 4.9789 -1.8806 3.1904 40 1 4.5049 -2.8313 4.6186 41 1 2.9706 -3.8087 5.5026 42 1 3.9410 -5.1793 4.9126 43 1 3.0571 -7.3505 5.9260 44 1 -0.1271 -8.7254 7.4247 45 1 2.6191 -9.4862 6.1149 46 1 1.7034 -10.4809 7.3690 47 1 -0.2719 -10.6574 5.7875 48 1 0.6433 -9.6627 4.5329 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755801717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:44 Heat of formation + Delta-G solvation = 84.651071 kcal Electronic energy + Delta-G solvation = -29556.446301 eV Core-core repulsion = 25458.644585 eV Total energy + Delta-G solvation = -4097.801716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.38091 -40.05388 -37.62093 -37.22322 -35.47676 -34.66194 -34.38800 -31.34950 -30.84316 -30.20959 -28.60192 -27.12127 -25.80326 -25.28560 -24.28213 -23.03989 -22.38938 -21.58978 -20.76852 -20.49112 -19.42083 -17.91002 -17.47773 -16.81292 -16.53386 -16.15151 -15.84994 -15.55710 -15.09783 -14.90504 -14.75272 -14.61573 -14.42443 -13.95487 -13.59385 -13.42403 -13.18111 -12.85973 -12.79215 -12.57725 -12.48007 -11.88109 -11.73297 -11.65085 -11.55756 -11.34315 -11.09264 -10.99427 -10.84981 -10.68833 -10.52950 -10.50488 -10.34769 -10.25545 -9.95533 -9.92388 -9.80462 -9.58641 -9.15974 -8.64048 -8.40511 -6.68126 -5.66867 -3.11331 1.43845 1.99391 2.39522 2.42752 2.89753 3.38656 3.44412 3.46384 3.46999 3.91687 4.09609 4.24432 4.50932 4.51658 4.54551 4.55530 4.63249 4.84865 4.93949 5.02463 5.07718 5.11897 5.25224 5.28187 5.42910 5.48029 5.50943 5.52067 5.61003 5.71829 5.75979 5.85622 5.87003 6.00064 6.00946 6.09770 6.31026 6.43282 6.55962 6.80342 6.88093 7.18539 7.47634 7.79772 7.95304 7.98732 8.42324 8.49327 8.49570 9.27178 9.91735 10.40842 11.36944 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.002255 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.933620 B =12414.800678 C =12784.207331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.592 5.592 3 C -0.259 4.259 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.899 5.899 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.126 3.874 12 C 0.070 3.930 13 H 0.095 0.905 14 O -0.540 6.540 15 C 0.082 3.918 16 N -0.602 5.602 17 C 0.071 3.929 18 C 0.508 3.492 19 O -0.505 6.505 20 C 0.098 3.902 21 N -0.280 5.280 22 C -0.054 4.054 23 C 0.008 3.992 24 C -0.070 4.070 25 C -0.171 4.171 26 C -0.165 4.165 27 N -0.266 5.266 28 N -0.040 5.040 29 H 0.036 0.964 30 H 0.038 0.962 31 H -0.006 1.006 32 H 0.252 0.748 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.363 0.637 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.187 0.813 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.590 -22.341 10.515 27.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.313 5.313 3 C -0.389 4.389 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.543 5.543 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.207 1.207 11 C -0.003 4.003 12 C 0.006 3.994 13 H 0.113 0.887 14 O -0.344 6.344 15 C -0.041 4.041 16 N -0.336 5.336 17 C -0.072 4.072 18 C 0.292 3.708 19 O -0.379 6.379 20 C -0.028 4.028 21 N -0.073 5.073 22 C -0.204 4.204 23 C -0.129 4.129 24 C -0.090 4.090 25 C -0.209 4.209 26 C -0.203 4.203 27 N -0.133 5.133 28 N -0.019 5.019 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.013 0.987 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.209 0.791 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.204 0.796 44 H 0.139 0.861 45 H 0.113 0.887 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.060 -20.864 10.255 25.331 hybrid contribution 1.450 0.083 -0.171 1.462 sum 11.510 -20.781 10.084 25.807 Atomic orbital electron populations 1.20774 0.82156 0.94908 0.99799 1.43870 1.02071 1.00128 1.85252 1.19161 0.97037 0.85033 1.37662 0.91472 1.25011 0.97928 0.98326 0.98480 1.70126 1.18605 1.26659 1.38900 0.86307 0.78481 0.84260 0.77628 1.21502 1.21800 1.20684 1.21438 0.96425 0.89409 0.93069 1.23262 0.84531 0.93538 0.98056 0.88722 1.86641 1.32071 1.59370 1.56280 1.22532 1.01414 0.99338 0.80834 1.47653 1.25967 1.45068 1.14916 1.21904 0.87556 1.00872 0.96867 1.19964 0.83424 0.79970 0.87449 1.90788 1.27208 1.55122 1.64762 1.21946 0.89167 0.94808 0.96846 1.46785 1.07155 1.12026 1.41379 1.23179 1.01676 0.87437 1.08065 1.20978 0.89374 0.97002 1.05584 1.19979 1.03298 0.84271 1.01441 1.23008 0.93946 1.01238 1.02666 1.23004 1.00776 0.99584 0.96922 1.75127 1.26698 0.97845 1.13609 1.78589 0.87227 1.19983 1.16146 0.94544 0.94316 0.98749 0.93775 0.93278 0.94157 0.79101 0.89837 0.89987 0.92290 0.89908 0.91292 0.85322 0.85179 0.79612 0.86068 0.88694 0.88002 0.88073 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.38 8.62 59.85 0.52 4.90 16 2 N -0.59 -15.08 2.89 -181.11 -0.52 -15.60 16 3 C -0.26 -7.13 9.68 -15.06 -0.15 -7.28 16 4 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 5 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 6 N -0.90 -27.03 10.67 55.49 0.59 -26.44 16 7 Si 0.90 21.98 29.58 -169.99 -5.03 16.95 16 8 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 C 0.13 2.50 5.37 -4.04 -0.02 2.48 16 12 C 0.07 1.27 3.48 -26.73 -0.09 1.18 16 13 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 14 O -0.54 -11.39 11.70 -44.00 -0.51 -11.90 16 15 C 0.08 1.09 5.15 -4.05 -0.02 1.07 16 16 N -0.60 -6.98 2.83 -181.58 -0.51 -7.50 16 17 C 0.07 0.52 10.24 59.84 0.61 1.13 16 18 C 0.51 6.66 7.20 -10.98 -0.08 6.58 16 19 O -0.51 -8.89 14.04 -3.22 -0.05 -8.94 16 20 C 0.10 0.88 5.49 -5.19 -0.03 0.85 16 21 N -0.28 -3.47 3.20 -62.45 -0.20 -3.67 16 22 C -0.05 -0.54 10.89 -17.05 -0.19 -0.72 16 23 C 0.01 0.10 6.88 -82.78 -0.57 -0.47 16 24 C -0.07 -0.62 6.33 -91.77 -0.58 -1.20 16 25 C -0.17 -1.01 10.02 -26.73 -0.27 -1.28 16 26 C -0.17 -1.26 10.23 -26.73 -0.27 -1.53 16 27 N -0.27 -4.35 12.41 33.29 0.41 -3.94 16 28 N -0.04 -0.67 12.13 60.35 0.73 0.06 16 29 H 0.04 1.05 7.40 -51.93 -0.38 0.67 16 30 H 0.04 1.07 7.21 -51.93 -0.37 0.70 16 31 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 32 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 34 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 35 H 0.36 7.21 8.45 45.56 0.38 7.60 16 36 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 37 H 0.08 1.15 7.42 -51.93 -0.39 0.77 16 38 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 40 H 0.07 0.37 6.44 -51.93 -0.33 0.04 16 41 H 0.13 0.97 7.40 -51.93 -0.38 0.59 16 42 H 0.13 0.54 8.03 -51.93 -0.42 0.12 16 43 H 0.19 1.00 7.45 -52.49 -0.39 0.60 16 44 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 0.48 7.23 -51.93 -0.38 0.10 16 46 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 397.34 15.07 5.99 5.99 Total: -1.00 -38.59 397.34 -7.14 -45.73 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.82 Total: 3.59 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.23 Total: 5.67 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.50 Total: -57.09 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.56 Total: -20.84 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.59 -7.14 -45.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755801717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.380 kcal (2) G-P(sol) polarization free energy of solvation -38.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds