Wall clock time and date at job start Tue Mar 31 2020 21:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 120.00326 * 2 1 4 4 H 1.07990 * 120.00250 * 200.36684 * 3 2 1 5 5 C 1.38818 * 119.99576 * 20.35931 * 3 2 1 6 6 N 1.31618 * 119.99994 * 14.99864 * 5 3 2 7 7 Si 1.86798 * 119.99536 * 194.99974 * 5 3 2 8 8 H 1.48494 * 109.47316 * 85.00334 * 7 5 3 9 9 H 1.48509 * 109.46960 * 205.00487 * 7 5 3 10 10 H 1.48496 * 109.47212 * 324.99867 * 7 5 3 11 11 C 1.46496 * 120.00037 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.47697 * 270.00367 * 11 2 1 13 13 H 1.08999 * 109.46280 * 305.00203 * 12 11 2 14 14 O 1.42902 * 109.46993 * 64.99720 * 12 11 2 15 15 C 1.52994 * 109.47502 * 184.99874 * 12 11 2 16 16 N 1.46498 * 109.47353 * 179.97438 * 15 12 11 17 17 C 1.46493 * 120.00255 * 270.00223 * 16 15 12 18 18 C 1.34777 * 119.99492 * 90.00098 * 16 15 12 19 19 O 1.21286 * 120.00541 * 359.97438 * 18 16 15 20 20 C 1.50702 * 119.99864 * 180.02562 * 18 16 15 21 21 N 1.46497 * 109.47207 * 180.02562 * 20 18 16 22 22 C 1.35309 * 125.87265 * 124.99903 * 21 20 18 23 23 C 1.35350 * 106.17943 * 180.24861 * 22 21 20 24 24 C 1.50693 * 126.75351 * 179.77813 * 23 22 21 25 25 C 1.53002 * 117.50067 * 343.61782 * 24 23 22 26 26 C 1.52998 * 60.00158 * 252.50872 * 25 24 23 27 27 N 1.33773 * 106.49332 * 359.63939 * 23 22 21 28 28 N 1.28630 * 108.88934 * 0.37056 * 27 23 22 29 29 H 1.09006 * 109.46894 * 275.10839 * 1 2 3 30 30 H 1.08997 * 109.47038 * 35.10889 * 1 2 3 31 31 H 1.09001 * 109.47039 * 155.10869 * 1 2 3 32 32 H 0.97005 * 119.99391 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.47125 * 149.99827 * 11 2 1 34 34 H 1.08999 * 109.47287 * 30.00195 * 11 2 1 35 35 H 0.96699 * 114.00137 * 59.99995 * 14 12 11 36 36 H 1.09005 * 109.46760 * 59.99500 * 15 12 11 37 37 H 1.08995 * 109.46959 * 300.00123 * 15 12 11 38 38 H 1.08996 * 109.47122 * 269.99831 * 17 16 15 39 39 H 1.09003 * 109.47281 * 29.99846 * 17 16 15 40 40 H 1.09005 * 109.46889 * 149.99641 * 17 16 15 41 41 H 1.08998 * 109.46953 * 59.99787 * 20 18 16 42 42 H 1.08994 * 109.46718 * 299.99514 * 20 18 16 43 43 H 1.07998 * 126.91102 * 359.97438 * 22 21 20 44 44 H 1.08999 * 115.55336 * 129.32398 * 24 23 22 45 45 H 1.09005 * 117.49432 * 0.02562 * 25 24 23 46 46 H 1.08993 * 117.50094 * 145.02128 * 25 24 23 47 47 H 1.08991 * 117.50291 * 252.50687 * 26 25 24 48 48 H 1.09000 * 117.51986 * 107.47445 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1791 1.2151 -0.3255 5 6 1.5207 2.3505 0.4183 6 7 0.3877 2.2836 1.0846 7 14 2.2824 4.0126 0.0353 8 1 1.8681 4.4458 -1.3233 9 1 1.8224 5.0100 1.0348 10 1 3.7624 3.9034 0.0902 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7099 1.4433 13 1 2.9642 -0.9123 1.9819 14 8 1.2060 -1.9928 2.0822 15 6 3.3238 -2.9675 1.4456 16 7 3.5684 -3.3896 2.8270 17 6 4.7331 -2.8784 3.5538 18 6 2.7219 -4.2482 3.4291 19 8 1.7573 -4.6711 2.8276 20 6 2.9731 -4.6820 4.8503 21 7 1.9202 -5.6095 5.2712 22 6 2.1113 -6.8541 5.7665 23 6 0.8786 -7.3542 6.0161 24 6 0.5539 -8.7160 6.5737 25 6 1.6578 -9.7748 6.5400 26 6 0.4664 -9.8813 5.5861 27 7 0.0054 -6.4005 5.6734 28 7 0.6540 -5.3807 5.2330 29 1 -0.3633 0.0915 1.0237 30 1 -0.3633 0.8407 -0.5910 31 1 -0.3633 -0.9322 -0.4325 32 1 -0.0520 3.0975 1.3765 33 1 3.1500 -1.1386 -0.5134 34 1 1.6085 -2.0286 -0.5129 35 1 0.6955 -2.6943 1.6553 36 1 4.2746 -2.7517 0.9581 37 1 2.8121 -3.7650 0.9069 38 1 5.5820 -3.5429 3.3931 39 1 4.9789 -1.8806 3.1904 40 1 4.5049 -2.8313 4.6186 41 1 2.9706 -3.8087 5.5026 42 1 3.9410 -5.1793 4.9126 43 1 3.0571 -7.3505 5.9260 44 1 -0.1271 -8.7254 7.4247 45 1 2.6191 -9.4862 6.1149 46 1 1.7034 -10.4809 7.3690 47 1 -0.2719 -10.6574 5.7875 48 1 0.6433 -9.6627 4.5329 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755801717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:43 Heat of formation + Delta-G solvation = 55.212181 kcal Electronic energy + Delta-G solvation = -29557.722867 eV Core-core repulsion = 25458.644585 eV Total energy + Delta-G solvation = -4099.078282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.27701 -41.05684 -38.82785 -38.14247 -36.84022 -36.13222 -35.42584 -33.30064 -31.69679 -31.55387 -29.69262 -28.12647 -27.80524 -26.62257 -25.02504 -24.11329 -23.40950 -22.64896 -22.20754 -21.55609 -20.32944 -18.84205 -18.70338 -18.31913 -17.60541 -17.38459 -16.80917 -16.51205 -16.48214 -16.16738 -16.05402 -15.57207 -15.52778 -15.34504 -15.06351 -14.76418 -14.33596 -14.08531 -13.67379 -13.60044 -13.32526 -13.26527 -13.10110 -12.80779 -12.64343 -12.53001 -12.50666 -12.28219 -12.17591 -12.16197 -12.02217 -11.99188 -11.80965 -11.69806 -11.36038 -11.24068 -11.18203 -10.74711 -10.58399 -9.97678 -9.63750 -8.73143 -7.80754 -5.27622 0.59523 1.25300 1.44741 1.46871 1.48971 1.51142 1.55634 2.04490 2.51068 2.88656 3.18367 3.31000 3.39526 3.59708 3.69969 3.73531 3.89532 3.93269 4.00329 4.06841 4.10977 4.22740 4.27602 4.28686 4.41615 4.47275 4.57057 4.66141 4.77732 4.80986 4.82161 4.86558 4.94790 4.97104 4.99131 5.21046 5.23731 5.26061 5.29725 5.31358 5.40948 5.57993 5.62725 5.75294 6.30024 6.31051 6.92131 7.07105 7.13535 7.54977 7.87173 8.32678 9.22731 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.002255 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.933620 B =12414.800678 C =12784.207331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.610 5.610 3 C -0.260 4.260 4 H 0.081 0.919 5 C -0.062 4.062 6 N -0.940 5.940 7 Si 0.971 3.029 8 H -0.287 1.287 9 H -0.300 1.300 10 H -0.262 1.262 11 C 0.121 3.879 12 C 0.079 3.921 13 H 0.068 0.932 14 O -0.565 6.565 15 C 0.096 3.904 16 N -0.602 5.602 17 C 0.062 3.938 18 C 0.497 3.503 19 O -0.561 6.561 20 C 0.096 3.904 21 N -0.279 5.279 22 C -0.031 4.031 23 C -0.010 4.010 24 C -0.093 4.093 25 C -0.138 4.138 26 C -0.176 4.176 27 N -0.314 5.314 28 N -0.104 5.104 29 H -0.001 1.001 30 H 0.011 0.989 31 H 0.021 0.979 32 H 0.244 0.756 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.365 0.635 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.145 0.855 42 H 0.191 0.809 43 H 0.241 0.759 44 H 0.119 0.881 45 H 0.111 0.889 46 H 0.124 0.876 47 H 0.111 0.889 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.061 -24.322 11.179 31.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.332 5.332 3 C -0.390 4.390 4 H 0.098 0.902 5 C -0.257 4.257 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.214 1.214 9 H -0.227 1.227 10 H -0.186 1.186 11 C -0.006 4.006 12 C 0.016 3.984 13 H 0.086 0.914 14 O -0.370 6.370 15 C -0.028 4.028 16 N -0.334 5.334 17 C -0.080 4.080 18 C 0.284 3.716 19 O -0.438 6.438 20 C -0.027 4.027 21 N -0.072 5.072 22 C -0.182 4.182 23 C -0.149 4.149 24 C -0.113 4.113 25 C -0.175 4.175 26 C -0.214 4.214 27 N -0.180 5.180 28 N -0.083 5.083 29 H 0.017 0.983 30 H 0.030 0.970 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.211 0.789 36 H 0.134 0.866 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.162 0.838 42 H 0.208 0.792 43 H 0.257 0.743 44 H 0.137 0.863 45 H 0.130 0.870 46 H 0.142 0.858 47 H 0.130 0.870 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.600 -22.847 10.916 29.228 hybrid contribution 0.131 0.587 -0.389 0.716 sum 14.731 -22.260 10.527 28.694 Atomic orbital electron populations 1.20408 0.83223 0.94994 0.97205 1.44096 1.01883 1.01718 1.85540 1.19601 0.97438 0.85906 1.36069 0.90168 1.25871 0.98706 1.02095 0.99019 1.70334 1.20496 1.26904 1.40927 0.85215 0.78585 0.79454 0.76775 1.21416 1.22740 1.18591 1.21661 0.96985 0.87424 0.94563 1.23014 0.84253 0.95354 0.95751 0.91370 1.86611 1.33616 1.59670 1.57080 1.22180 1.01655 0.96296 0.82667 1.47740 1.26864 1.44442 1.14376 1.22256 0.86975 1.01136 0.97607 1.20714 0.82541 0.79530 0.88830 1.90771 1.29458 1.57240 1.66369 1.22355 0.90548 0.95918 0.93916 1.47065 1.06530 1.13151 1.40475 1.23979 1.02891 0.86111 1.05180 1.21636 0.89858 0.97681 1.05711 1.20082 1.05917 0.83485 1.01864 1.23166 0.93384 0.98965 1.01976 1.23041 1.02807 0.99360 0.96179 1.75031 1.28829 0.99207 1.14910 1.78510 0.89492 1.21195 1.19094 0.98268 0.96981 0.96068 0.94652 0.91080 0.92816 0.78869 0.86562 0.90675 0.88505 0.90834 0.89117 0.83777 0.79168 0.74322 0.86288 0.87021 0.85801 0.87050 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.09 8.62 127.77 1.10 11.19 16 2 N -0.61 -31.36 2.89 -726.92 -2.10 -33.47 16 3 C -0.26 -14.30 9.68 84.03 0.81 -13.49 16 4 H 0.08 4.12 7.86 -2.92 -0.02 4.10 16 5 C -0.06 -3.58 5.06 84.86 0.43 -3.15 16 6 N -0.94 -58.70 10.67 21.65 0.23 -58.47 16 7 Si 0.97 45.69 29.58 68.60 2.03 47.72 16 8 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 9 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 11 C 0.12 4.71 5.37 86.38 0.46 5.17 16 12 C 0.08 2.85 3.48 30.59 0.11 2.96 16 13 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 14 O -0.57 -24.65 11.70 -140.59 -1.65 -26.30 16 15 C 0.10 2.39 5.15 86.38 0.44 2.83 16 16 N -0.60 -12.49 2.83 -846.78 -2.39 -14.88 16 17 C 0.06 0.66 10.24 127.77 1.31 1.96 16 18 C 0.50 12.29 7.20 87.66 0.63 12.92 16 19 O -0.56 -20.03 14.04 5.34 0.07 -19.96 16 20 C 0.10 1.43 5.49 85.63 0.47 1.90 16 21 N -0.28 -6.50 3.20 -351.48 -1.12 -7.63 16 22 C -0.03 -0.54 10.89 83.49 0.91 0.37 16 23 C -0.01 -0.25 6.88 41.59 0.29 0.04 16 24 C -0.09 -1.55 6.33 -11.54 -0.07 -1.63 16 25 C -0.14 -1.16 10.02 30.59 0.31 -0.85 16 26 C -0.18 -2.48 10.23 30.59 0.31 -2.17 16 27 N -0.31 -10.78 12.41 -48.60 -0.60 -11.38 16 28 N -0.10 -3.65 12.13 37.02 0.45 -3.20 16 29 H 0.00 -0.06 7.40 -2.38 -0.02 -0.08 16 30 H 0.01 0.67 7.21 -2.39 -0.02 0.65 16 31 H 0.02 0.99 7.84 -2.39 -0.02 0.97 16 32 H 0.24 14.91 8.31 -92.70 -0.77 14.14 16 33 H 0.07 2.46 8.03 -2.39 -0.02 2.44 16 34 H 0.05 1.95 7.86 -2.39 -0.02 1.93 16 35 H 0.37 15.25 8.45 -74.06 -0.63 14.63 16 36 H 0.12 2.14 8.07 -2.38 -0.02 2.12 16 37 H 0.07 2.02 7.42 -2.39 -0.02 2.01 16 38 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.07 0.97 8.07 -2.39 -0.02 0.95 16 40 H 0.09 0.58 6.44 -2.38 -0.02 0.57 16 41 H 0.14 1.73 7.40 -2.39 -0.02 1.71 16 42 H 0.19 0.41 8.03 -2.39 -0.02 0.39 16 43 H 0.24 1.16 7.45 -2.91 -0.02 1.14 16 44 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.11 0.57 7.23 -2.38 -0.02 0.56 16 46 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -92.85 397.34 2.77 -90.08 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.35 Total: 19.43 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 7.51 Total: 18.06 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -5.54 Total: -129.02 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -1.57 Total: -46.26 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -92.85 2.77 -90.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755801717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.288 kcal (2) G-P(sol) polarization free energy of solvation -92.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds