Wall clock time and date at job start Tue Mar 31 2020 21:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00274 * 2 1 4 4 C 1.53004 * 109.47701 * 184.71493 * 3 2 1 5 5 N 1.46899 * 109.46757 * 69.10444 * 4 3 2 6 6 C 1.46897 * 111.00098 * 286.26663 * 5 4 3 7 7 C 1.50693 * 109.47417 * 302.60012 * 6 5 4 8 8 H 1.08004 * 119.99984 * 4.74991 * 7 6 5 9 9 C 1.37879 * 120.00368 * 184.74972 * 7 6 5 10 10 N 1.31519 * 119.99817 * 354.84489 * 9 7 6 11 11 Si 1.86805 * 120.00134 * 174.85149 * 9 7 6 12 12 H 1.48490 * 109.47270 * 4.99933 * 11 9 7 13 13 H 1.48505 * 109.47114 * 125.00104 * 11 9 7 14 14 H 1.48501 * 109.47069 * 244.99898 * 11 9 7 15 15 C 1.38578 * 110.99930 * 162.31478 * 5 4 3 16 16 N 1.31214 * 126.47243 * 0.02562 * 15 5 4 17 17 N 1.28533 * 109.86128 * 180.02562 * 16 15 5 18 18 C 1.30294 * 110.05358 * 359.97438 * 17 16 15 19 19 C 1.50697 * 126.34800 * 179.97438 * 18 17 16 20 20 H 1.09001 * 109.66844 * 179.52835 * 19 18 17 21 21 C 1.53348 * 109.67321 * 58.99732 * 19 18 17 22 22 C 1.52917 * 108.67628 * 172.73258 * 21 19 18 23 23 N 1.45752 * 110.48304 * 50.75596 * 22 21 19 24 24 C 1.33350 * 124.11186 * 340.91713 * 23 22 21 25 25 O 1.21283 * 118.24716 * 182.50977 * 24 23 22 26 26 C 1.50181 * 123.50457 * 2.23053 * 24 23 22 27 27 N 1.36454 * 126.47468 * 180.31244 * 15 5 4 28 28 C 1.46503 * 127.13593 * 359.97438 * 27 15 5 29 29 H 1.09008 * 109.46645 * 64.93766 * 1 2 3 30 30 H 1.08996 * 109.47145 * 184.93713 * 1 2 3 31 31 H 1.09001 * 109.47187 * 304.94349 * 1 2 3 32 32 H 1.09000 * 109.47312 * 64.71786 * 3 2 1 33 33 H 1.08995 * 109.47514 * 304.71577 * 3 2 1 34 34 H 1.08995 * 109.46833 * 309.11049 * 4 3 2 35 35 H 1.08991 * 109.47463 * 189.10599 * 4 3 2 36 36 H 1.08999 * 109.47352 * 62.60310 * 6 5 4 37 37 H 1.09003 * 109.47545 * 182.59947 * 6 5 4 38 38 H 0.97000 * 119.99923 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.60150 * 292.49504 * 21 19 18 40 40 H 1.09004 * 109.60067 * 52.97401 * 21 19 18 41 41 H 1.08995 * 109.30085 * 171.06104 * 22 21 19 42 42 H 1.08993 * 109.30167 * 290.44311 * 22 21 19 43 43 H 0.97010 * 117.94538 * 160.94738 * 23 22 21 44 44 H 1.09003 * 109.39749 * 102.54207 * 26 24 23 45 45 H 1.09002 * 109.39981 * 222.28129 * 26 24 23 46 46 H 1.08993 * 109.46909 * 270.15882 * 28 27 15 47 47 H 1.08997 * 109.46882 * 30.16134 * 28 27 15 48 48 H 1.09001 * 109.46793 * 150.15935 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5310 1.1867 -0.1186 5 7 3.8810 0.6997 -1.4596 6 6 3.5707 -0.7294 -1.5983 7 6 4.3057 -1.5083 -0.5381 8 1 4.8784 -0.9875 0.2150 9 6 4.2471 -2.8858 -0.5295 10 7 3.4697 -3.5162 -1.3827 11 14 5.2717 -3.8566 0.6942 12 1 5.9616 -2.9191 1.6161 13 1 4.3871 -4.7580 1.4755 14 1 6.2808 -4.6648 -0.0364 15 6 5.2138 0.9486 -1.7461 16 7 6.0843 1.5357 -0.9592 17 7 7.2269 1.6017 -1.5443 18 6 7.1538 1.0647 -2.7292 19 6 8.2769 0.9460 -3.7269 20 1 7.9181 0.4439 -4.6253 21 6 9.4307 0.1443 -3.1124 22 6 10.4765 -0.1183 -4.1967 23 7 10.8296 1.1220 -4.8759 24 6 10.0800 2.2248 -4.8565 25 8 10.4536 3.1841 -5.4978 26 6 8.7950 2.3403 -4.0879 27 7 5.8674 0.6344 -2.9020 28 6 5.3078 -0.0295 -4.0821 29 1 -0.3633 0.4354 -0.9310 30 1 -0.3633 -1.0238 0.0884 31 1 -0.3633 0.5886 0.8424 32 1 1.7571 1.8159 0.9292 33 1 1.6234 1.8754 -0.8447 34 1 3.9002 0.4859 0.6302 35 1 3.9855 2.1640 0.0432 36 1 2.4976 -0.8812 -1.4823 37 1 3.8820 -1.0748 -2.5842 38 1 3.4287 -4.4853 -1.3768 39 1 9.8811 0.7154 -2.3005 40 1 9.0540 -0.8044 -2.7302 41 1 11.3692 -0.5457 -3.7403 42 1 10.0734 -0.8244 -4.9226 43 1 11.6619 1.1468 -5.3737 44 1 8.9693 2.9095 -3.1747 45 1 8.0532 2.8555 -4.6981 46 1 5.4222 -1.1086 -3.9802 47 1 4.2498 0.2171 -4.1701 48 1 5.8353 0.3093 -4.9738 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772161349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:18 Heat of formation + Delta-G solvation = 10.815539 kcal Electronic energy + Delta-G solvation = -30784.705673 eV Core-core repulsion = 26683.702209 eV Total energy + Delta-G solvation = -4101.003464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.40177 -40.29087 -37.99259 -36.79591 -36.15231 -34.49934 -33.57973 -32.58108 -29.83154 -29.65160 -28.64574 -27.33385 -26.39975 -25.54843 -24.84471 -23.39102 -22.69065 -21.95543 -20.11400 -19.93603 -19.00975 -17.47699 -16.97723 -16.57997 -16.33319 -16.04500 -15.77207 -15.52059 -15.50933 -14.89234 -14.57658 -14.39171 -14.32987 -14.15488 -13.82265 -13.59308 -13.50727 -12.97971 -12.74857 -12.51357 -11.99158 -11.93827 -11.73234 -11.65763 -11.32602 -11.24921 -11.19536 -11.12444 -11.02468 -10.88809 -10.78205 -10.46158 -10.06475 -9.98339 -9.96102 -9.66120 -9.49590 -9.27764 -9.08343 -8.84969 -8.43650 -7.35585 -6.12406 -4.16234 2.36110 2.53614 2.84747 3.12834 3.22051 3.31085 3.38153 3.49387 4.24546 4.35558 4.37339 4.47691 4.55129 4.62422 4.67886 4.91309 4.97499 5.12926 5.13908 5.22334 5.34215 5.50055 5.52487 5.55095 5.65628 5.71809 5.73873 5.78567 5.80434 5.81373 5.84291 5.91962 5.99772 6.06933 6.13931 6.39637 6.57703 6.58846 6.70871 6.97068 7.13829 7.23865 7.50544 7.54778 7.75080 7.82487 8.05801 8.11491 8.12878 8.87254 9.42064 9.48746 10.94598 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.003659 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.655370 B = 7650.220851 C = 8930.985542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.069 3.931 4 C 0.071 3.929 5 N -0.461 5.461 6 C 0.179 3.821 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.071 3.929 10 N -0.889 5.889 11 Si 0.886 3.114 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.285 1.285 15 C 0.418 3.582 16 N -0.347 5.347 17 N -0.277 5.277 18 C 0.146 3.854 19 C 0.012 3.988 20 H 0.089 0.911 21 C -0.127 4.127 22 C 0.111 3.889 23 N -0.721 5.721 24 C 0.526 3.474 25 O -0.561 6.561 26 C -0.124 4.124 27 N -0.477 5.477 28 C 0.082 3.918 29 H 0.033 0.967 30 H 0.081 0.919 31 H 0.030 0.970 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.031 0.969 38 H 0.261 0.739 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.398 0.602 44 H 0.115 0.885 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.458 5.226 -6.334 9.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C -0.009 4.009 4 C -0.056 4.056 5 N -0.184 5.184 6 C 0.056 3.944 7 C -0.576 4.576 8 H 0.078 0.922 9 C -0.132 4.132 10 N -0.528 5.528 11 Si 0.714 3.286 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.211 1.211 15 C 0.062 3.938 16 N -0.193 5.193 17 N -0.117 5.117 18 C -0.122 4.122 19 C -0.009 4.009 20 H 0.108 0.892 21 C -0.165 4.165 22 C -0.013 4.013 23 N -0.373 5.373 24 C 0.314 3.686 25 O -0.439 6.439 26 C -0.165 4.165 27 N -0.172 5.172 28 C -0.061 4.061 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.233 0.767 44 H 0.133 0.867 45 H 0.119 0.881 46 H 0.102 0.898 47 H 0.111 0.889 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.682 6.288 -5.715 9.701 hybrid contribution 0.272 -1.804 -0.119 1.829 sum 4.955 4.483 -5.834 8.870 Atomic orbital electron populations 1.22650 0.82919 1.02186 0.98773 1.88291 1.17896 1.26491 1.94830 1.22503 0.93777 0.85464 0.99107 1.22026 0.93267 1.01198 0.89143 1.59393 1.08056 1.22747 1.28186 1.20349 1.00126 0.76744 0.97174 1.21593 1.30528 0.91825 1.13620 0.92164 1.24806 0.95090 0.97600 0.95660 1.69947 1.37506 1.08480 1.36899 0.86626 0.80292 0.80130 0.81590 1.19701 1.20933 1.21087 1.22763 0.91545 0.96059 0.83460 1.74564 0.95720 1.25762 1.23228 1.73717 1.16474 1.18028 1.03456 1.23880 0.85108 1.05368 0.97854 1.19409 0.90573 0.96184 0.94768 0.89235 1.21922 0.94333 1.02240 0.98047 1.21435 0.99345 0.85554 0.94996 1.45513 1.25267 1.12798 1.53750 1.20122 0.85851 0.81992 0.80679 1.90757 1.72414 1.36779 1.43990 1.21717 0.94457 0.97910 1.02407 1.45741 1.09417 1.47200 1.14863 1.22033 1.00662 0.98687 0.84763 0.94841 0.90078 0.95118 0.93367 0.93434 0.90285 0.89628 0.90618 0.95064 0.92968 0.89467 0.89054 0.90021 0.91313 0.76660 0.86714 0.88058 0.89758 0.88938 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -6.85 7.93 -35.23 -0.28 -7.13 16 3 C 0.07 1.15 6.21 37.16 0.23 1.38 16 4 C 0.07 1.37 4.92 -3.82 -0.02 1.36 16 5 N -0.46 -9.51 4.72 -175.89 -0.83 -10.34 16 6 C 0.18 4.20 4.57 -4.98 -0.02 4.18 16 7 C -0.54 -14.11 7.71 -34.44 -0.27 -14.37 16 8 H 0.06 1.68 6.32 -52.48 -0.33 1.35 16 9 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 10 N -0.89 -24.49 13.29 55.43 0.74 -23.75 16 11 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.42 8.65 6.45 -318.88 -2.06 6.60 16 16 N -0.35 -7.53 10.99 30.31 0.33 -7.19 16 17 N -0.28 -5.45 12.12 32.99 0.40 -5.05 16 18 C 0.15 2.41 6.58 -154.02 -1.01 1.40 16 19 C 0.01 0.14 2.62 -91.56 -0.24 -0.10 16 20 H 0.09 0.90 6.95 -51.93 -0.36 0.54 16 21 C -0.13 -1.31 5.30 -26.59 -0.14 -1.45 16 22 C 0.11 0.82 7.17 -4.49 -0.03 0.79 16 23 N -0.72 -6.52 5.45 -61.39 -0.33 -6.86 16 24 C 0.53 6.42 7.71 -11.87 -0.09 6.32 16 25 O -0.56 -8.98 17.78 5.55 0.10 -8.88 16 26 C -0.12 -1.46 5.34 -28.10 -0.15 -1.61 16 27 N -0.48 -8.47 3.21 -121.46 -0.39 -8.86 16 28 C 0.08 1.16 9.15 59.85 0.55 1.71 16 29 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.76 5.87 -51.93 -0.30 1.46 16 35 H 0.09 1.57 7.43 -51.93 -0.39 1.18 16 36 H 0.08 1.91 5.68 -51.93 -0.30 1.62 16 37 H 0.03 0.75 5.25 -51.93 -0.27 0.47 16 38 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.09 0.98 8.12 -51.93 -0.42 0.56 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.40 3.07 8.80 -40.82 -0.36 2.71 16 44 H 0.11 1.47 8.05 -51.93 -0.42 1.05 16 45 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.08 1.29 7.73 -51.93 -0.40 0.88 16 47 H 0.09 1.33 7.70 -51.93 -0.40 0.93 16 48 H 0.08 0.80 7.24 -51.93 -0.38 0.43 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -34.00 383.28 -9.01 -43.01 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.27 Total: 3.46 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -2.24 Total: 9.58 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.08 Total: -62.05 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.18 Total: -16.01 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.00 -9.01 -43.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772161349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.828 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds