Wall clock time and date at job start Tue Mar 31 2020 21:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00274 * 2 1 4 4 C 1.53004 * 109.47701 * 184.71493 * 3 2 1 5 5 N 1.46899 * 109.46757 * 69.10444 * 4 3 2 6 6 C 1.46897 * 111.00098 * 286.26663 * 5 4 3 7 7 C 1.50693 * 109.47417 * 302.60012 * 6 5 4 8 8 H 1.08004 * 119.99984 * 4.74991 * 7 6 5 9 9 C 1.37879 * 120.00368 * 184.74972 * 7 6 5 10 10 N 1.31519 * 119.99817 * 354.84489 * 9 7 6 11 11 Si 1.86805 * 120.00134 * 174.85149 * 9 7 6 12 12 H 1.48490 * 109.47270 * 4.99933 * 11 9 7 13 13 H 1.48505 * 109.47114 * 125.00104 * 11 9 7 14 14 H 1.48501 * 109.47069 * 244.99898 * 11 9 7 15 15 C 1.38578 * 110.99930 * 162.31478 * 5 4 3 16 16 N 1.31214 * 126.47243 * 0.02562 * 15 5 4 17 17 N 1.28533 * 109.86128 * 180.02562 * 16 15 5 18 18 C 1.30294 * 110.05358 * 359.97438 * 17 16 15 19 19 C 1.50697 * 126.34800 * 179.97438 * 18 17 16 20 20 H 1.09001 * 109.66844 * 179.52835 * 19 18 17 21 21 C 1.53348 * 109.67321 * 58.99732 * 19 18 17 22 22 C 1.52917 * 108.67628 * 172.73258 * 21 19 18 23 23 N 1.45752 * 110.48304 * 50.75596 * 22 21 19 24 24 C 1.33350 * 124.11186 * 340.91713 * 23 22 21 25 25 O 1.21283 * 118.24716 * 182.50977 * 24 23 22 26 26 C 1.50181 * 123.50457 * 2.23053 * 24 23 22 27 27 N 1.36454 * 126.47468 * 180.31244 * 15 5 4 28 28 C 1.46503 * 127.13593 * 359.97438 * 27 15 5 29 29 H 1.09008 * 109.46645 * 64.93766 * 1 2 3 30 30 H 1.08996 * 109.47145 * 184.93713 * 1 2 3 31 31 H 1.09001 * 109.47187 * 304.94349 * 1 2 3 32 32 H 1.09000 * 109.47312 * 64.71786 * 3 2 1 33 33 H 1.08995 * 109.47514 * 304.71577 * 3 2 1 34 34 H 1.08995 * 109.46833 * 309.11049 * 4 3 2 35 35 H 1.08991 * 109.47463 * 189.10599 * 4 3 2 36 36 H 1.08999 * 109.47352 * 62.60310 * 6 5 4 37 37 H 1.09003 * 109.47545 * 182.59947 * 6 5 4 38 38 H 0.97000 * 119.99923 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.60150 * 292.49504 * 21 19 18 40 40 H 1.09004 * 109.60067 * 52.97401 * 21 19 18 41 41 H 1.08995 * 109.30085 * 171.06104 * 22 21 19 42 42 H 1.08993 * 109.30167 * 290.44311 * 22 21 19 43 43 H 0.97010 * 117.94538 * 160.94738 * 23 22 21 44 44 H 1.09003 * 109.39749 * 102.54207 * 26 24 23 45 45 H 1.09002 * 109.39981 * 222.28129 * 26 24 23 46 46 H 1.08993 * 109.46909 * 270.15882 * 28 27 15 47 47 H 1.08997 * 109.46882 * 30.16134 * 28 27 15 48 48 H 1.09001 * 109.46793 * 150.15935 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5310 1.1867 -0.1186 5 7 3.8810 0.6997 -1.4596 6 6 3.5707 -0.7294 -1.5983 7 6 4.3057 -1.5083 -0.5381 8 1 4.8784 -0.9875 0.2150 9 6 4.2471 -2.8858 -0.5295 10 7 3.4697 -3.5162 -1.3827 11 14 5.2717 -3.8566 0.6942 12 1 5.9616 -2.9191 1.6161 13 1 4.3871 -4.7580 1.4755 14 1 6.2808 -4.6648 -0.0364 15 6 5.2138 0.9486 -1.7461 16 7 6.0843 1.5357 -0.9592 17 7 7.2269 1.6017 -1.5443 18 6 7.1538 1.0647 -2.7292 19 6 8.2769 0.9460 -3.7269 20 1 7.9181 0.4439 -4.6253 21 6 9.4307 0.1443 -3.1124 22 6 10.4765 -0.1183 -4.1967 23 7 10.8296 1.1220 -4.8759 24 6 10.0800 2.2248 -4.8565 25 8 10.4536 3.1841 -5.4978 26 6 8.7950 2.3403 -4.0879 27 7 5.8674 0.6344 -2.9020 28 6 5.3078 -0.0295 -4.0821 29 1 -0.3633 0.4354 -0.9310 30 1 -0.3633 -1.0238 0.0884 31 1 -0.3633 0.5886 0.8424 32 1 1.7571 1.8159 0.9292 33 1 1.6234 1.8754 -0.8447 34 1 3.9002 0.4859 0.6302 35 1 3.9855 2.1640 0.0432 36 1 2.4976 -0.8812 -1.4823 37 1 3.8820 -1.0748 -2.5842 38 1 3.4287 -4.4853 -1.3768 39 1 9.8811 0.7154 -2.3005 40 1 9.0540 -0.8044 -2.7302 41 1 11.3692 -0.5457 -3.7403 42 1 10.0734 -0.8244 -4.9226 43 1 11.6619 1.1468 -5.3737 44 1 8.9693 2.9095 -3.1747 45 1 8.0532 2.8555 -4.6981 46 1 5.4222 -1.1086 -3.9802 47 1 4.2498 0.2171 -4.1701 48 1 5.8353 0.3093 -4.9738 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772161349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:16 Heat of formation + Delta-G solvation = -12.800573 kcal Electronic energy + Delta-G solvation = -30785.729745 eV Core-core repulsion = 26683.702209 eV Total energy + Delta-G solvation = -4102.027536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.85372 -41.23749 -39.47541 -37.90215 -37.52518 -35.82378 -34.74223 -34.44265 -31.07820 -30.67307 -30.27634 -28.69926 -27.91089 -26.94872 -25.94390 -24.62745 -24.09081 -23.42311 -21.52580 -21.27767 -19.97790 -18.82940 -18.37977 -17.99260 -17.55519 -17.36274 -17.12613 -16.86316 -16.67709 -16.43513 -16.02108 -15.68546 -15.44575 -15.21380 -15.12540 -14.79917 -14.64151 -14.38656 -14.12439 -13.82171 -13.34117 -13.31045 -13.02947 -12.89067 -12.76468 -12.72963 -12.63592 -12.49907 -12.33233 -12.27620 -12.14325 -12.05238 -11.93175 -11.65160 -11.18948 -11.00345 -10.92616 -10.63415 -10.48829 -10.25162 -10.05944 -8.99955 -8.16644 -6.26001 0.94407 1.29602 1.34568 1.44926 1.49002 1.58673 1.97372 2.33168 2.37723 3.01926 3.09497 3.14639 3.25000 3.55137 3.71064 3.71819 3.86731 3.98829 4.17620 4.20702 4.25580 4.33817 4.38608 4.44743 4.49690 4.52784 4.61999 4.64846 4.67076 4.70304 4.80589 4.86459 4.93210 4.94941 4.98771 5.10877 5.11968 5.23865 5.29074 5.51099 5.76712 5.78949 5.84481 5.89995 6.14159 6.29140 6.46345 6.54892 6.83130 7.18429 7.39882 7.92783 8.88177 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.003659 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.655370 B = 7650.220851 C = 8930.985542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.398 6.398 3 C 0.074 3.926 4 C 0.074 3.926 5 N -0.453 5.453 6 C 0.198 3.802 7 C -0.537 4.537 8 H 0.037 0.963 9 C 0.032 3.968 10 N -0.911 5.911 11 Si 0.935 3.065 12 H -0.285 1.285 13 H -0.278 1.278 14 H -0.274 1.274 15 C 0.392 3.608 16 N -0.375 5.375 17 N -0.312 5.312 18 C 0.169 3.831 19 C 0.014 3.986 20 H 0.118 0.882 21 C -0.126 4.126 22 C 0.117 3.883 23 N -0.707 5.707 24 C 0.529 3.471 25 O -0.603 6.603 26 C -0.117 4.117 27 N -0.480 5.480 28 C 0.077 3.923 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.264 0.736 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.409 0.591 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.239 4.616 -7.683 10.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C -0.003 4.003 4 C -0.053 4.053 5 N -0.176 5.176 6 C 0.074 3.926 7 C -0.576 4.576 8 H 0.055 0.945 9 C -0.168 4.168 10 N -0.551 5.551 11 Si 0.762 3.238 12 H -0.210 1.210 13 H -0.204 1.204 14 H -0.199 1.199 15 C 0.035 3.965 16 N -0.220 5.220 17 N -0.150 5.150 18 C -0.100 4.100 19 C -0.007 4.007 20 H 0.136 0.864 21 C -0.165 4.165 22 C -0.007 4.007 23 N -0.358 5.358 24 C 0.317 3.683 25 O -0.486 6.486 26 C -0.158 4.158 27 N -0.174 5.174 28 C -0.064 4.064 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.111 0.889 43 H 0.245 0.755 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.092 0.908 47 H 0.107 0.893 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.478 5.647 -7.062 10.572 hybrid contribution 0.078 -1.607 0.314 1.639 sum 5.556 4.040 -6.747 9.629 Atomic orbital electron populations 1.22793 0.80766 1.02643 1.00549 1.88212 1.20419 1.27927 1.95186 1.22521 0.91616 0.85052 1.01079 1.22015 0.95449 1.00259 0.87596 1.59390 1.08487 1.20934 1.28774 1.19973 0.98590 0.78189 0.95885 1.21660 1.30186 0.92166 1.13588 0.94513 1.25353 0.96022 0.98377 0.97080 1.70005 1.38361 1.08770 1.37923 0.85866 0.79266 0.78831 0.79831 1.21018 1.20386 1.19946 1.22875 0.91647 0.97333 0.84674 1.74460 0.96588 1.26495 1.24469 1.73655 1.15988 1.20211 1.05158 1.24769 0.85544 1.02210 0.97462 1.19686 0.89547 0.96854 0.94587 0.86434 1.21898 0.94458 1.01325 0.98787 1.21572 0.99634 0.84881 0.94586 1.45452 1.24997 1.12427 1.52892 1.20039 0.85880 0.82199 0.80188 1.90747 1.73396 1.38491 1.45954 1.21591 0.94709 0.97614 1.01842 1.46045 1.09584 1.46844 1.14953 1.22258 1.01204 0.97936 0.85048 0.93514 0.90501 0.92644 0.90662 0.91970 0.93895 0.89002 0.92228 0.95485 0.92716 0.90754 0.89635 0.87340 0.88862 0.75470 0.88088 0.87759 0.90768 0.89300 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -15.30 7.93 -148.98 -1.18 -16.49 16 3 C 0.07 2.44 6.21 71.98 0.45 2.89 16 4 C 0.07 2.95 4.92 86.30 0.42 3.37 16 5 N -0.45 -19.03 4.72 -710.39 -3.35 -22.38 16 6 C 0.20 9.47 4.57 85.56 0.39 9.86 16 7 C -0.54 -28.87 7.71 25.60 0.20 -28.67 16 8 H 0.04 2.13 6.32 -2.91 -0.02 2.11 16 9 C 0.03 1.73 5.45 84.65 0.46 2.19 16 10 N -0.91 -50.22 13.29 21.45 0.29 -49.94 16 11 Si 0.94 43.85 29.54 68.60 2.03 45.87 16 12 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 15 C 0.39 16.47 6.45 260.11 1.68 18.15 16 16 N -0.38 -16.67 10.99 -58.01 -0.64 -17.30 16 17 N -0.31 -12.39 12.12 -49.54 -0.60 -12.99 16 18 C 0.17 5.45 6.58 137.64 0.91 6.36 16 19 C 0.01 0.31 2.62 -11.40 -0.03 0.28 16 20 H 0.12 1.90 6.95 -2.39 -0.02 1.89 16 21 C -0.13 -2.31 5.30 30.68 0.16 -2.15 16 22 C 0.12 1.28 7.17 86.49 0.62 1.90 16 23 N -0.71 -10.64 5.45 -467.34 -2.55 -13.18 16 24 C 0.53 11.93 7.71 87.72 0.68 12.61 16 25 O -0.60 -18.73 17.78 -3.04 -0.05 -18.78 16 26 C -0.12 -2.59 5.34 29.71 0.16 -2.43 16 27 N -0.48 -16.72 3.21 -538.19 -1.73 -18.44 16 28 C 0.08 2.07 9.15 127.77 1.17 3.24 16 29 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 2.01 5.87 -2.39 -0.01 1.99 16 35 H 0.09 3.46 7.43 -2.39 -0.02 3.44 16 36 H 0.06 3.08 5.68 -2.39 -0.01 3.07 16 37 H 0.03 1.31 5.25 -2.39 -0.01 1.30 16 38 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 39 H 0.07 1.58 8.12 -2.38 -0.02 1.56 16 40 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.41 5.03 8.80 -92.70 -0.82 4.21 16 44 H 0.10 2.56 8.05 -2.39 -0.02 2.54 16 45 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.07 2.17 7.73 -2.39 -0.02 2.15 16 47 H 0.09 2.46 7.70 -2.39 -0.02 2.45 16 48 H 0.12 2.12 7.24 -2.39 -0.02 2.10 16 Total: -1.00 -76.01 383.28 0.90 -75.11 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.17 Total: 18.88 kcal Atomic # 6 Polarization: 21.14 SS G_CDS: 8.51 Total: 29.65 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -8.57 Total: -134.24 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.24 Total: -35.27 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -76.01 0.90 -75.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772161349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.307 kcal (2) G-P(sol) polarization free energy of solvation -76.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds