Wall clock time and date at job start Tue Mar 31 2020 21:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00140 * 2 1 4 4 C 1.52996 * 109.47354 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47455 * 64.23398 * 4 3 2 6 6 C 1.46896 * 111.00305 * 72.05155 * 5 4 3 7 7 C 1.50709 * 109.46886 * 62.38037 * 6 5 4 8 8 H 1.07992 * 119.99882 * 5.08769 * 7 6 5 9 9 C 1.37879 * 119.99803 * 185.09179 * 7 6 5 10 10 N 1.31517 * 120.00003 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99984 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47198 * 89.99869 * 11 9 7 13 13 H 1.48496 * 109.47422 * 209.99949 * 11 9 7 14 14 H 1.48506 * 109.47247 * 330.00208 * 11 9 7 15 15 C 1.38575 * 110.99987 * 196.00728 * 5 4 3 16 16 N 1.31225 * 126.47595 * 342.14886 * 15 5 4 17 17 N 1.28524 * 109.86031 * 179.73347 * 16 15 5 18 18 C 1.30297 * 110.05602 * 0.44243 * 17 16 15 19 19 C 1.50701 * 126.34910 * 179.82242 * 18 17 16 20 20 H 1.08991 * 109.67121 * 179.19360 * 19 18 17 21 21 C 1.53343 * 109.67488 * 299.69708 * 19 18 17 22 22 C 1.52918 * 108.67385 * 187.29696 * 21 19 18 23 23 N 1.45758 * 110.49084 * 309.24894 * 22 21 19 24 24 C 1.33354 * 124.10391 * 19.09287 * 23 22 21 25 25 O 1.21281 * 118.24381 * 177.47552 * 24 23 22 26 26 C 1.50176 * 123.50989 * 357.75493 * 24 23 22 27 27 N 1.36454 * 126.47368 * 162.14704 * 15 5 4 28 28 C 1.46498 * 127.13504 * 359.97438 * 27 15 5 29 29 H 1.09006 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47026 * 299.99795 * 1 2 3 31 31 H 1.08997 * 109.47663 * 60.00025 * 1 2 3 32 32 H 1.09004 * 109.47455 * 59.99793 * 3 2 1 33 33 H 1.09006 * 109.47078 * 300.00529 * 3 2 1 34 34 H 1.09000 * 109.47000 * 304.22965 * 4 3 2 35 35 H 1.09008 * 109.47513 * 184.23574 * 4 3 2 36 36 H 1.08993 * 109.47568 * 182.37992 * 6 5 4 37 37 H 1.09005 * 109.47056 * 302.38314 * 6 5 4 38 38 H 0.97001 * 119.99888 * 179.97438 * 10 9 7 39 39 H 1.08996 * 109.60676 * 67.53969 * 21 19 18 40 40 H 1.09002 * 109.73558 * 307.13436 * 21 19 18 41 41 H 1.08993 * 109.30193 * 188.93133 * 22 21 19 42 42 H 1.09001 * 109.13422 * 69.44815 * 22 21 19 43 43 H 0.96998 * 117.94536 * 199.07486 * 23 22 21 44 44 H 1.08997 * 109.39999 * 137.71362 * 26 24 23 45 45 H 1.09001 * 109.40041 * 257.45581 * 26 24 23 46 46 H 1.09004 * 109.47348 * 264.72074 * 28 27 15 47 47 H 1.08994 * 109.47245 * 24.71735 * 28 27 15 48 48 H 1.08998 * 109.47193 * 144.72199 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9755 0.5461 -1.2482 6 6 3.8238 1.4590 -2.3890 7 6 4.7013 2.6672 -2.1857 8 1 5.3717 2.7115 -1.3402 9 6 4.6482 3.7160 -3.0791 10 7 3.8313 3.6623 -4.1084 11 14 5.7353 5.2139 -2.8268 12 1 7.0296 5.0096 -3.5256 13 1 5.0590 6.4151 -3.3788 14 1 5.9818 5.4078 -1.3752 15 6 5.2822 0.0969 -1.1420 16 7 6.1658 0.4722 -0.2474 17 7 7.2738 -0.1499 -0.4404 18 6 7.1667 -0.9454 -1.4668 19 6 8.2448 -1.8428 -2.0176 20 1 7.8579 -2.4001 -2.8706 21 6 9.4467 -0.9972 -2.4554 22 6 10.4469 -1.9032 -3.1746 23 7 10.7351 -3.0843 -2.3707 24 6 9.9585 -3.5212 -1.3785 25 8 10.2761 -4.5437 -0.8087 26 6 8.7086 -2.8181 -0.9329 27 7 5.8930 -0.8192 -1.9480 28 6 5.3058 -1.5222 -3.0913 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8522 0.5796 0.8488 35 1 3.9786 2.1777 0.0753 36 1 4.1169 0.9471 -3.3055 37 1 2.7832 1.7745 -2.4659 38 1 3.7936 4.4003 -4.7367 39 1 9.9198 -0.5529 -1.5797 40 1 9.1154 -0.2089 -3.1315 41 1 11.3709 -1.3523 -3.3497 42 1 10.0252 -2.2126 -4.1309 43 1 11.5422 -3.5840 -2.5701 44 1 7.9256 -3.5536 -0.7486 45 1 8.9106 -2.2681 -0.0137 46 1 4.9333 -2.4942 -2.7678 47 1 4.4823 -0.9338 -3.4957 48 1 6.0649 -1.6619 -3.8608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772161352.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:22 Heat of formation + Delta-G solvation = 5.690276 kcal Electronic energy + Delta-G solvation = -30530.976418 eV Core-core repulsion = 26429.750705 eV Total energy + Delta-G solvation = -4101.225713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.41332 -40.30075 -37.97906 -36.84045 -36.30536 -34.50238 -33.63289 -32.65974 -29.85929 -29.70445 -28.61598 -27.31461 -26.47297 -25.74180 -24.87395 -23.44271 -22.92233 -21.87418 -20.17829 -19.87487 -19.02139 -17.49062 -17.03491 -16.52314 -16.28213 -16.12641 -15.91663 -15.65601 -15.49236 -14.91620 -14.68906 -14.44545 -14.39963 -14.23871 -13.85262 -13.59789 -13.52556 -13.04616 -12.82383 -12.58641 -12.20879 -12.00049 -11.83820 -11.68225 -11.45820 -11.27022 -11.22985 -11.13602 -11.03945 -10.92915 -10.64117 -10.46602 -10.27678 -10.06868 -9.97598 -9.68776 -9.51440 -9.29079 -9.24636 -8.77232 -8.61017 -7.46557 -6.22803 -4.30790 2.32775 2.53041 2.79396 3.11542 3.19935 3.27124 3.34056 3.48898 4.20862 4.22791 4.29922 4.45506 4.53512 4.56460 4.65927 4.89627 4.97898 5.09429 5.11226 5.12204 5.32661 5.39073 5.44632 5.54316 5.55951 5.69397 5.69858 5.70006 5.75926 5.80937 5.84634 5.89663 5.91001 5.98566 6.16921 6.38992 6.56804 6.57858 6.65818 6.90366 7.12683 7.19804 7.20486 7.44354 7.64488 7.73519 7.95987 8.05110 8.10074 8.79371 9.37193 9.41266 10.83347 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010291 B = 0.003849 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.099184 B = 7272.205789 C = 9140.953887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.067 3.933 4 C 0.081 3.919 5 N -0.460 5.460 6 C 0.190 3.810 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.070 3.930 10 N -0.890 5.890 11 Si 0.892 3.108 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.270 1.270 15 C 0.416 3.584 16 N -0.333 5.333 17 N -0.278 5.278 18 C 0.147 3.853 19 C 0.012 3.988 20 H 0.089 0.911 21 C -0.128 4.128 22 C 0.111 3.889 23 N -0.721 5.721 24 C 0.526 3.474 25 O -0.560 6.560 26 C -0.124 4.124 27 N -0.475 5.475 28 C 0.081 3.919 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.029 0.971 37 H 0.052 0.948 38 H 0.264 0.736 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.398 0.602 44 H 0.102 0.898 45 H 0.115 0.885 46 H 0.074 0.926 47 H 0.099 0.901 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 -9.973 -0.591 10.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.010 4.010 4 C -0.047 4.047 5 N -0.183 5.183 6 C 0.067 3.933 7 C -0.594 4.594 8 H 0.089 0.911 9 C -0.133 4.133 10 N -0.529 5.529 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.195 1.195 15 C 0.060 3.940 16 N -0.178 5.178 17 N -0.118 5.118 18 C -0.120 4.120 19 C -0.009 4.009 20 H 0.107 0.893 21 C -0.167 4.167 22 C -0.013 4.013 23 N -0.374 5.374 24 C 0.314 3.686 25 O -0.439 6.439 26 C -0.165 4.165 27 N -0.170 5.170 28 C -0.063 4.063 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.233 0.767 44 H 0.120 0.880 45 H 0.133 0.867 46 H 0.092 0.908 47 H 0.117 0.883 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.922 -10.100 0.670 10.856 hybrid contribution 0.319 1.125 -1.373 1.803 sum 4.241 -8.975 -0.703 9.952 Atomic orbital electron populations 1.22653 0.82426 1.01903 0.99496 1.87963 1.18357 1.28303 1.95291 1.22651 0.93583 0.84373 1.00347 1.21923 0.92408 1.00341 0.90021 1.59281 1.10577 1.40463 1.08029 1.20007 0.98799 0.88715 0.85798 1.21808 1.23553 1.02542 1.11493 0.91117 1.24903 0.95217 0.98382 0.94813 1.69931 1.36806 1.32592 1.13523 0.86575 0.80514 0.82081 0.78899 1.20653 1.21074 1.19477 1.22532 0.91788 0.90121 0.89597 1.74650 0.96203 1.21784 1.25134 1.73758 1.17497 1.07152 1.13415 1.23937 0.85691 1.04725 0.97697 1.19408 0.91147 0.93069 0.97282 0.89255 1.21934 0.94342 0.97909 1.02475 1.21434 0.99958 0.86005 0.93892 1.45512 1.27065 1.29741 1.35057 1.20121 0.85116 0.84461 0.78937 1.90759 1.73134 1.25034 1.54928 1.21706 0.95238 0.99022 1.00494 1.45827 1.11185 1.33586 1.26379 1.21994 1.00204 0.97546 0.86514 0.90370 0.94825 0.94312 0.93246 0.92117 0.90885 0.89819 0.95278 0.92966 0.92622 0.89445 0.89094 0.89984 0.91367 0.76652 0.87993 0.86655 0.90772 0.88276 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.46 10.64 -35.23 -0.37 -6.84 16 3 C 0.07 1.15 6.08 37.16 0.23 1.38 16 4 C 0.08 1.58 4.69 -3.83 -0.02 1.56 16 5 N -0.46 -9.56 4.61 -175.88 -0.81 -10.37 16 6 C 0.19 4.46 4.81 -4.97 -0.02 4.43 16 7 C -0.56 -14.41 7.52 -34.44 -0.26 -14.67 16 8 H 0.07 1.93 6.40 -52.49 -0.34 1.60 16 9 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 10 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 11 Si 0.89 20.96 29.54 -169.99 -5.02 15.93 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 15 C 0.42 8.67 5.83 -318.87 -1.86 6.81 16 16 N -0.33 -7.37 10.98 30.31 0.33 -7.04 16 17 N -0.28 -5.53 12.10 32.99 0.40 -5.13 16 18 C 0.15 2.42 6.59 -154.01 -1.02 1.40 16 19 C 0.01 0.14 2.63 -91.56 -0.24 -0.10 16 20 H 0.09 0.86 7.08 -51.93 -0.37 0.49 16 21 C -0.13 -1.29 5.30 -26.60 -0.14 -1.43 16 22 C 0.11 0.79 7.17 -4.48 -0.03 0.76 16 23 N -0.72 -6.40 5.45 -61.39 -0.33 -6.74 16 24 C 0.53 6.38 7.71 -11.87 -0.09 6.28 16 25 O -0.56 -8.95 17.78 5.56 0.10 -8.85 16 26 C -0.12 -1.46 5.34 -28.10 -0.15 -1.61 16 27 N -0.48 -8.31 3.21 -121.46 -0.39 -8.70 16 28 C 0.08 1.08 10.76 59.85 0.64 1.72 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.11 6.58 -51.93 -0.34 0.77 16 34 H 0.07 1.42 7.81 -51.93 -0.41 1.01 16 35 H 0.08 1.78 6.45 -51.92 -0.33 1.45 16 36 H 0.03 0.71 6.39 -51.93 -0.33 0.38 16 37 H 0.05 1.29 6.55 -51.93 -0.34 0.95 16 38 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.09 0.98 8.12 -51.93 -0.42 0.56 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.40 3.01 8.80 -40.82 -0.36 2.65 16 44 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.12 1.49 8.02 -51.93 -0.42 1.07 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.10 1.48 6.25 -51.93 -0.32 1.15 16 48 H 0.08 0.82 7.48 -51.93 -0.39 0.44 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -33.71 387.34 -8.78 -42.49 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.31 Total: 3.14 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -1.95 Total: 9.83 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.07 Total: -61.55 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.28 Total: -15.69 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.71 -8.78 -42.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772161352.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.182 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds