Wall clock time and date at job start Tue Mar 31 2020 21:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00140 * 2 1 4 4 C 1.52996 * 109.47354 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47455 * 64.23398 * 4 3 2 6 6 C 1.46896 * 111.00305 * 72.05155 * 5 4 3 7 7 C 1.50709 * 109.46886 * 62.38037 * 6 5 4 8 8 H 1.07992 * 119.99882 * 5.08769 * 7 6 5 9 9 C 1.37879 * 119.99803 * 185.09179 * 7 6 5 10 10 N 1.31517 * 120.00003 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99984 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47198 * 89.99869 * 11 9 7 13 13 H 1.48496 * 109.47422 * 209.99949 * 11 9 7 14 14 H 1.48506 * 109.47247 * 330.00208 * 11 9 7 15 15 C 1.38575 * 110.99987 * 196.00728 * 5 4 3 16 16 N 1.31225 * 126.47595 * 342.14886 * 15 5 4 17 17 N 1.28524 * 109.86031 * 179.73347 * 16 15 5 18 18 C 1.30297 * 110.05602 * 0.44243 * 17 16 15 19 19 C 1.50701 * 126.34910 * 179.82242 * 18 17 16 20 20 H 1.08991 * 109.67121 * 179.19360 * 19 18 17 21 21 C 1.53343 * 109.67488 * 299.69708 * 19 18 17 22 22 C 1.52918 * 108.67385 * 187.29696 * 21 19 18 23 23 N 1.45758 * 110.49084 * 309.24894 * 22 21 19 24 24 C 1.33354 * 124.10391 * 19.09287 * 23 22 21 25 25 O 1.21281 * 118.24381 * 177.47552 * 24 23 22 26 26 C 1.50176 * 123.50989 * 357.75493 * 24 23 22 27 27 N 1.36454 * 126.47368 * 162.14704 * 15 5 4 28 28 C 1.46498 * 127.13504 * 359.97438 * 27 15 5 29 29 H 1.09006 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47026 * 299.99795 * 1 2 3 31 31 H 1.08997 * 109.47663 * 60.00025 * 1 2 3 32 32 H 1.09004 * 109.47455 * 59.99793 * 3 2 1 33 33 H 1.09006 * 109.47078 * 300.00529 * 3 2 1 34 34 H 1.09000 * 109.47000 * 304.22965 * 4 3 2 35 35 H 1.09008 * 109.47513 * 184.23574 * 4 3 2 36 36 H 1.08993 * 109.47568 * 182.37992 * 6 5 4 37 37 H 1.09005 * 109.47056 * 302.38314 * 6 5 4 38 38 H 0.97001 * 119.99888 * 179.97438 * 10 9 7 39 39 H 1.08996 * 109.60676 * 67.53969 * 21 19 18 40 40 H 1.09002 * 109.73558 * 307.13436 * 21 19 18 41 41 H 1.08993 * 109.30193 * 188.93133 * 22 21 19 42 42 H 1.09001 * 109.13422 * 69.44815 * 22 21 19 43 43 H 0.96998 * 117.94536 * 199.07486 * 23 22 21 44 44 H 1.08997 * 109.39999 * 137.71362 * 26 24 23 45 45 H 1.09001 * 109.40041 * 257.45581 * 26 24 23 46 46 H 1.09004 * 109.47348 * 264.72074 * 28 27 15 47 47 H 1.08994 * 109.47245 * 24.71735 * 28 27 15 48 48 H 1.08998 * 109.47193 * 144.72199 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9755 0.5461 -1.2482 6 6 3.8238 1.4590 -2.3890 7 6 4.7013 2.6672 -2.1857 8 1 5.3717 2.7115 -1.3402 9 6 4.6482 3.7160 -3.0791 10 7 3.8313 3.6623 -4.1084 11 14 5.7353 5.2139 -2.8268 12 1 7.0296 5.0096 -3.5256 13 1 5.0590 6.4151 -3.3788 14 1 5.9818 5.4078 -1.3752 15 6 5.2822 0.0969 -1.1420 16 7 6.1658 0.4722 -0.2474 17 7 7.2738 -0.1499 -0.4404 18 6 7.1667 -0.9454 -1.4668 19 6 8.2448 -1.8428 -2.0176 20 1 7.8579 -2.4001 -2.8706 21 6 9.4467 -0.9972 -2.4554 22 6 10.4469 -1.9032 -3.1746 23 7 10.7351 -3.0843 -2.3707 24 6 9.9585 -3.5212 -1.3785 25 8 10.2761 -4.5437 -0.8087 26 6 8.7086 -2.8181 -0.9329 27 7 5.8930 -0.8192 -1.9480 28 6 5.3058 -1.5222 -3.0913 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8522 0.5796 0.8488 35 1 3.9786 2.1777 0.0753 36 1 4.1169 0.9471 -3.3055 37 1 2.7832 1.7745 -2.4659 38 1 3.7936 4.4003 -4.7367 39 1 9.9198 -0.5529 -1.5797 40 1 9.1154 -0.2089 -3.1315 41 1 11.3709 -1.3523 -3.3497 42 1 10.0252 -2.2126 -4.1309 43 1 11.5422 -3.5840 -2.5701 44 1 7.9256 -3.5536 -0.7486 45 1 8.9106 -2.2681 -0.0137 46 1 4.9333 -2.4942 -2.7678 47 1 4.4823 -0.9338 -3.4957 48 1 6.0649 -1.6619 -3.8608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772161352.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:21 Heat of formation + Delta-G solvation = -18.213804 kcal Electronic energy + Delta-G solvation = -30532.012976 eV Core-core repulsion = 26429.750705 eV Total energy + Delta-G solvation = -4102.262271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.85835 -41.23803 -39.43702 -37.99518 -37.58251 -35.81203 -34.81354 -34.46069 -31.14253 -30.67571 -30.24102 -28.66776 -27.96499 -26.97783 -25.97337 -24.88288 -24.13680 -23.33232 -21.52683 -21.26111 -19.98251 -18.85759 -18.37147 -17.92381 -17.64944 -17.39156 -17.18844 -16.94446 -16.62069 -16.45761 -16.04366 -15.78779 -15.39722 -15.29330 -15.09207 -14.82668 -14.70625 -14.39942 -14.09230 -13.91057 -13.64104 -13.23585 -13.14199 -12.89633 -12.82050 -12.74478 -12.59037 -12.45027 -12.38467 -12.22681 -12.14368 -12.07324 -11.93432 -11.79764 -11.26073 -11.00417 -10.90390 -10.66702 -10.51574 -10.34395 -10.05569 -9.11452 -8.24837 -6.39104 0.92563 1.31641 1.35181 1.45360 1.46072 1.57847 1.96810 2.33264 2.34107 2.94958 3.03365 3.04902 3.21673 3.54223 3.71206 3.72123 3.89356 3.99692 4.14068 4.19387 4.22363 4.34692 4.40380 4.42763 4.46437 4.54367 4.59331 4.63314 4.64067 4.71314 4.82046 4.86731 4.87943 4.93623 4.97758 5.01610 5.13912 5.17734 5.24783 5.27949 5.65556 5.72445 5.83515 5.88617 6.02349 6.29178 6.36236 6.49614 6.75783 7.18556 7.31317 7.91640 8.79374 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010291 B = 0.003849 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.099184 B = 7272.205789 C = 9140.953887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.078 3.922 4 C 0.084 3.916 5 N -0.452 5.452 6 C 0.210 3.790 7 C -0.557 4.557 8 H 0.052 0.948 9 C 0.031 3.969 10 N -0.914 5.914 11 Si 0.943 3.057 12 H -0.278 1.278 13 H -0.275 1.275 14 H -0.277 1.277 15 C 0.389 3.611 16 N -0.366 5.366 17 N -0.315 5.315 18 C 0.172 3.828 19 C 0.015 3.985 20 H 0.121 0.879 21 C -0.127 4.127 22 C 0.117 3.883 23 N -0.707 5.707 24 C 0.530 3.470 25 O -0.604 6.604 26 C -0.117 4.117 27 N -0.477 5.477 28 C 0.073 3.927 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.019 0.981 37 H 0.037 0.963 38 H 0.267 0.733 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.409 0.591 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.080 0.920 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 -10.863 -2.039 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C 0.001 3.999 4 C -0.043 4.043 5 N -0.176 5.176 6 C 0.085 3.915 7 C -0.596 4.596 8 H 0.071 0.929 9 C -0.170 4.170 10 N -0.553 5.553 11 Si 0.769 3.231 12 H -0.204 1.204 13 H -0.200 1.200 14 H -0.202 1.202 15 C 0.031 3.969 16 N -0.210 5.210 17 N -0.155 5.155 18 C -0.097 4.097 19 C -0.006 4.006 20 H 0.139 0.861 21 C -0.166 4.166 22 C -0.007 4.007 23 N -0.358 5.358 24 C 0.317 3.683 25 O -0.486 6.486 26 C -0.158 4.158 27 N -0.170 5.170 28 C -0.069 4.069 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.245 0.755 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.098 0.902 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.710 -10.981 -0.811 11.976 hybrid contribution 0.106 1.347 -0.925 1.637 sum 4.816 -9.634 -1.735 10.909 Atomic orbital electron populations 1.22884 0.80110 1.03545 1.00436 1.87912 1.20875 1.27896 1.95468 1.22474 0.91855 0.84822 1.00759 1.21860 0.94175 0.98735 0.89552 1.59273 1.11078 1.39654 1.07585 1.19628 0.97143 0.88235 0.86501 1.21887 1.23411 1.03614 1.10708 0.92943 1.25493 0.96290 1.00514 0.94716 1.69995 1.37798 1.33391 1.14095 0.85776 0.79205 0.79802 0.78269 1.20392 1.20001 1.20179 1.22618 0.91821 0.91627 0.90836 1.74531 0.97183 1.22923 1.26366 1.73684 1.17124 1.08968 1.15677 1.24842 0.85941 1.03018 0.95916 1.19694 0.90367 0.92599 0.97906 0.86125 1.21912 0.94229 0.98256 1.02164 1.21593 1.00480 0.84840 0.93738 1.45454 1.26613 1.29858 1.33857 1.20020 0.85186 0.83813 0.79266 1.90747 1.74179 1.26969 1.56712 1.21578 0.95513 0.98794 0.99934 1.46138 1.11242 1.32929 1.26726 1.22314 1.00769 0.97731 0.86076 0.88442 0.92965 0.94234 0.90702 0.93700 0.91163 0.92231 0.96293 0.94508 0.92351 0.91008 0.89336 0.87340 0.88617 0.75464 0.87894 0.88243 0.88248 0.90163 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.88 16 2 O -0.40 -13.50 10.64 -148.98 -1.58 -15.08 16 3 C 0.08 2.69 6.08 71.98 0.44 3.13 16 4 C 0.08 3.42 4.69 86.30 0.40 3.83 16 5 N -0.45 -19.34 4.61 -710.35 -3.27 -22.61 16 6 C 0.21 10.09 4.81 85.56 0.41 10.50 16 7 C -0.56 -29.61 7.52 25.60 0.19 -29.41 16 8 H 0.05 2.97 6.40 -2.91 -0.02 2.95 16 9 C 0.03 1.65 5.46 84.65 0.46 2.11 16 10 N -0.91 -50.10 13.29 21.45 0.28 -49.81 16 11 Si 0.94 43.20 29.54 68.60 2.03 45.23 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 C 0.39 16.53 5.83 260.11 1.52 18.05 16 16 N -0.37 -16.69 10.98 -58.00 -0.64 -17.33 16 17 N -0.32 -12.75 12.10 -49.53 -0.60 -13.35 16 18 C 0.17 5.51 6.59 137.64 0.91 6.41 16 19 C 0.02 0.32 2.63 -11.40 -0.03 0.29 16 20 H 0.12 1.81 7.08 -2.39 -0.02 1.80 16 21 C -0.13 -2.24 5.30 30.68 0.16 -2.07 16 22 C 0.12 1.18 7.17 86.49 0.62 1.80 16 23 N -0.71 -10.38 5.45 -467.32 -2.55 -12.92 16 24 C 0.53 11.93 7.71 87.71 0.68 12.61 16 25 O -0.60 -18.81 17.78 -3.03 -0.05 -18.86 16 26 C -0.12 -2.63 5.34 29.71 0.16 -2.47 16 27 N -0.48 -16.36 3.21 -538.19 -1.73 -18.09 16 28 C 0.07 1.80 10.76 127.77 1.38 3.17 16 29 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.04 1.68 6.58 -2.38 -0.02 1.67 16 34 H 0.07 2.84 7.81 -2.39 -0.02 2.83 16 35 H 0.06 2.68 6.45 -2.38 -0.02 2.66 16 36 H 0.02 0.95 6.39 -2.39 -0.02 0.93 16 37 H 0.04 1.88 6.55 -2.38 -0.02 1.86 16 38 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 39 H 0.07 1.51 8.12 -2.39 -0.02 1.49 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.11 0.66 8.14 -2.39 -0.02 0.65 16 42 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.41 4.89 8.80 -92.71 -0.82 4.07 16 44 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.10 2.58 8.02 -2.39 -0.02 2.56 16 46 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 47 H 0.08 2.34 6.25 -2.39 -0.01 2.33 16 48 H 0.11 1.98 7.48 -2.39 -0.02 1.96 16 Total: -1.00 -75.64 387.34 0.61 -75.03 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.17 Total: 17.98 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 8.54 Total: 29.82 kcal Atomic # 7 Polarization: -125.62 SS G_CDS: -8.50 Total: -134.12 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -1.64 Total: -33.94 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -75.64 0.61 -75.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772161352.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.815 kcal (2) G-P(sol) polarization free energy of solvation -75.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds