Wall clock time and date at job start Tue Mar 31 2020 21:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86810 * 120.00072 * 2 1 4 4 H 1.48502 * 109.47195 * 270.00199 * 3 2 1 5 5 H 1.48497 * 109.47007 * 30.00359 * 3 2 1 6 6 H 1.48500 * 109.46937 * 150.00431 * 3 2 1 7 7 C 1.38810 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00150 * 193.06228 * 7 2 1 9 9 N 1.36941 * 120.00011 * 13.06013 * 7 2 1 10 10 C 1.46964 * 120.59355 * 213.26268 * 9 7 2 11 11 C 1.53374 * 108.62971 * 235.20335 * 10 9 7 12 12 N 1.46960 * 108.63596 * 310.57498 * 11 10 9 13 13 C 1.34779 * 120.59539 * 235.20530 * 12 11 10 14 14 O 1.21287 * 119.99932 * 4.65347 * 13 12 11 15 15 C 1.50701 * 120.00101 * 184.65456 * 13 12 11 16 16 H 1.08991 * 109.50379 * 325.39485 * 15 13 12 17 17 C 1.53098 * 109.50532 * 85.48364 * 15 13 12 18 18 O 1.43009 * 109.25502 * 176.82584 * 17 15 13 19 19 C 1.43010 * 113.74251 * 301.32961 * 18 17 15 20 20 C 1.53093 * 109.26177 * 58.66841 * 19 18 17 21 21 N 1.47009 * 109.53979 * 205.28783 * 15 13 12 22 22 C 1.46900 * 111.00295 * 57.64944 * 21 15 13 23 23 C 1.53000 * 109.47045 * 169.99719 * 22 21 15 24 24 C 1.53781 * 113.61550 * 274.13804 * 23 22 21 25 25 C 1.53959 * 87.02104 * 220.04781 * 24 23 22 26 26 C 1.53783 * 113.61207 * 176.53220 * 23 22 21 27 27 C 1.46964 * 118.81066 * 55.48234 * 12 11 10 28 28 C 1.46963 * 120.58933 * 33.23913 * 9 7 2 29 29 H 0.97004 * 119.99800 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.61206 * 115.46195 * 10 9 7 31 31 H 1.08998 * 109.75027 * 355.02983 * 10 9 7 32 32 H 1.09005 * 109.60696 * 190.83122 * 11 10 9 33 33 H 1.09000 * 109.61102 * 70.32620 * 11 10 9 34 34 H 1.08999 * 109.50529 * 56.89505 * 17 15 13 35 35 H 1.08998 * 109.54393 * 296.78104 * 17 15 13 36 36 H 1.09004 * 109.51412 * 178.61102 * 19 18 17 37 37 H 1.09009 * 109.50653 * 298.73730 * 19 18 17 38 38 H 1.08994 * 109.51080 * 183.21608 * 20 19 18 39 39 H 1.09003 * 109.54128 * 63.10701 * 20 19 18 40 40 H 1.08994 * 109.47380 * 289.99672 * 22 21 15 41 41 H 1.08996 * 109.46806 * 50.00273 * 22 21 15 42 42 H 1.08997 * 112.85156 * 45.33388 * 23 22 21 43 43 H 1.09003 * 113.61719 * 334.57080 * 24 23 22 44 44 H 1.09000 * 113.61384 * 105.47163 * 24 23 22 45 45 H 1.08992 * 113.53842 * 270.81312 * 25 24 23 46 46 H 1.08998 * 113.73994 * 139.93825 * 25 24 23 47 47 H 1.09003 * 113.61401 * 254.52729 * 26 23 22 48 48 H 1.08999 * 113.61651 * 25.43474 * 26 23 22 49 49 H 1.09001 * 109.60961 * 64.26606 * 27 12 11 50 50 H 1.09006 * 109.60664 * 184.77413 * 27 12 11 51 51 H 1.09006 * 109.60898 * 244.53744 * 28 9 7 52 52 H 1.08997 * 109.61205 * 4.88321 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0692 -1.2143 0.2108 9 7 1.3521 -2.3726 -0.2691 10 6 1.7611 -3.6264 0.3794 11 6 2.0528 -4.6680 -0.7079 12 7 0.9246 -4.6927 -1.6493 13 6 0.2768 -5.8447 -1.9137 14 8 0.5677 -6.8561 -1.3107 15 6 -0.8089 -5.8761 -2.9583 16 1 -1.3499 -4.9300 -2.9494 17 6 -0.1839 -6.0947 -4.3387 18 8 -1.2229 -6.1977 -5.3159 19 6 -2.1470 -7.2596 -5.0641 20 6 -2.7919 -7.0530 -3.6911 21 7 -1.7393 -6.9765 -2.6675 22 6 -2.3194 -6.8348 -1.3254 23 6 -3.4572 -7.8430 -1.1524 24 6 -4.8131 -7.3368 -1.6721 25 6 -5.4443 -8.0000 -0.4344 26 6 -4.0791 -7.8346 0.2540 27 6 0.5192 -3.4399 -2.3020 28 6 0.2239 -2.3973 -1.2105 29 1 -0.4850 0.8401 0.0004 30 1 0.9575 -3.9846 1.0229 31 1 2.6586 -3.4576 0.9745 32 1 2.1697 -5.6508 -0.2511 33 1 2.9659 -4.3974 -1.2382 34 1 0.4016 -7.0141 -4.3317 35 1 0.4637 -5.2527 -4.5833 36 1 -2.9198 -7.2598 -5.8329 37 1 -1.6186 -8.2130 -5.0782 38 1 -3.4543 -7.8899 -3.4703 39 1 -3.3652 -6.1259 -3.6933 40 1 -1.5507 -7.0223 -0.5757 41 1 -2.7079 -5.8239 -1.2025 42 1 -3.1974 -8.8396 -1.5091 43 1 -4.9006 -6.2503 -1.6777 44 1 -5.1168 -7.7916 -2.6149 45 1 -5.7291 -9.0397 -0.5953 46 1 -6.2382 -7.4096 0.0230 47 1 -3.7911 -8.6910 0.8638 48 1 -3.9655 -6.8846 0.7760 49 1 1.3256 -3.0839 -2.9432 50 1 -0.3770 -3.6115 -2.8983 51 1 -0.6892 -2.6679 -0.6802 52 1 0.1051 -1.4137 -1.6650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364398708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:58 Heat of formation + Delta-G solvation = -11.370821 kcal Electronic energy + Delta-G solvation = -31676.805247 eV Core-core repulsion = 27678.380053 eV Total energy + Delta-G solvation = -3998.425194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.72165 -39.20166 -38.46327 -36.81274 -35.26470 -33.91804 -32.06473 -30.97954 -30.16186 -29.46255 -27.03943 -26.01853 -25.90167 -24.77169 -23.53137 -22.85134 -22.34877 -21.11344 -20.05543 -19.50570 -18.62078 -17.51702 -16.68926 -16.53007 -16.18899 -15.66720 -15.60748 -15.17413 -15.05256 -14.68332 -14.47426 -14.22513 -13.94404 -13.86349 -13.70099 -13.38361 -13.30894 -13.10227 -12.76916 -12.51559 -12.38791 -12.17045 -11.81265 -11.68790 -11.56035 -11.40486 -11.26967 -10.90893 -10.87174 -10.78916 -10.68889 -10.53224 -10.38074 -10.28798 -10.23005 -10.08516 -9.91088 -9.81383 -9.26559 -8.63306 -8.36173 -8.26167 -6.69531 -5.90326 -3.40885 2.83784 3.20252 3.30942 3.38404 3.39428 3.61678 3.86232 4.39783 4.46704 4.52431 4.55978 4.70194 4.73109 4.79984 4.88487 4.94386 5.06346 5.12811 5.26223 5.31017 5.32775 5.39391 5.43611 5.54294 5.56830 5.60821 5.66815 5.68926 5.73529 5.75938 5.80940 5.81602 5.85852 5.92610 6.01939 6.07807 6.13996 6.15236 6.29457 6.35060 6.39520 6.72729 6.80726 6.89345 6.92452 6.97277 7.15475 7.38054 7.69137 7.85384 8.34727 8.52354 9.08214 9.68780 10.28619 11.17348 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013100 B = 0.003297 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.857235 B = 8491.291518 C = 9176.934845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.009 3.991 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.132 3.868 11 C 0.096 3.904 12 N -0.595 5.595 13 C 0.517 3.483 14 O -0.536 6.536 15 C 0.030 3.970 16 H 0.074 0.926 17 C 0.080 3.920 18 O -0.379 6.379 19 C 0.059 3.941 20 C 0.014 3.986 21 N -0.512 5.512 22 C 0.061 3.939 23 C -0.106 4.106 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.135 4.135 27 C 0.074 3.926 28 C 0.162 3.838 29 H 0.256 0.744 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.043 0.957 40 H 0.091 0.909 41 H 0.034 0.966 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.022 0.978 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.958 -14.719 -7.599 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.005 3.995 11 C -0.028 4.028 12 N -0.328 5.328 13 C 0.303 3.697 14 O -0.413 6.413 15 C -0.082 4.082 16 H 0.092 0.908 17 C 0.002 3.998 18 O -0.297 6.297 19 C -0.018 4.018 20 C -0.114 4.114 21 N -0.237 5.237 22 C -0.067 4.067 23 C -0.124 4.124 24 C -0.179 4.179 25 C -0.180 4.180 26 C -0.173 4.173 27 C -0.050 4.050 28 C 0.035 3.965 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.052 0.948 42 H 0.115 0.885 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.100 0.900 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.041 0.959 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.647 -15.394 -7.418 18.721 hybrid contribution -0.124 1.679 0.318 1.713 sum -7.771 -13.715 -7.100 17.289 Atomic orbital electron populations 1.69978 1.05375 1.25787 1.53416 1.25215 0.95355 0.98624 0.99876 0.86250 0.79141 0.83323 0.77781 1.21261 1.21648 1.20294 1.19180 0.91403 0.83974 1.44349 0.91639 1.43910 1.36886 1.03636 1.46808 1.21297 0.98559 0.87044 0.92552 1.22218 0.87654 1.00942 0.91954 1.48093 1.33084 1.07840 1.43773 1.20044 0.82789 0.83304 0.83560 1.90642 1.66056 1.33421 1.51188 1.22368 0.94904 0.94849 0.96072 0.90828 1.22496 0.89465 1.02965 0.84854 1.88007 1.40314 1.53152 1.48266 1.22746 0.92460 0.90710 0.95836 1.23028 0.94094 1.02151 0.92123 1.62064 1.16455 1.42733 1.02486 1.22281 0.96887 0.97008 0.90484 1.22590 0.93006 0.99825 0.97022 1.23224 0.96331 1.00687 0.97688 1.22828 0.96926 1.00824 0.97378 1.22890 0.95875 1.02416 0.96100 1.22891 0.99417 0.85177 0.97495 1.21176 0.89562 0.96967 0.88755 0.93436 0.95976 0.91501 0.89973 0.91874 0.91617 0.87881 0.88429 0.92189 0.88569 0.93850 0.89037 0.94791 0.88480 0.90226 0.91456 0.90343 0.91565 0.91366 0.90006 0.91505 0.91079 0.95939 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.14 11.30 55.49 0.63 -24.52 16 2 C 0.01 0.23 4.98 -17.43 -0.09 0.15 16 3 Si 0.91 20.89 29.57 -169.99 -5.03 15.87 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.26 -6.82 9.55 -15.06 -0.14 -6.96 16 8 H 0.07 1.70 7.86 -52.49 -0.41 1.28 16 9 N -0.59 -14.17 2.94 -171.77 -0.51 -14.67 16 10 C 0.13 2.75 6.67 -3.60 -0.02 2.73 16 11 C 0.10 1.74 6.60 -3.60 -0.02 1.72 16 12 N -0.59 -10.55 2.94 -172.21 -0.51 -11.05 16 13 C 0.52 8.92 6.07 -10.98 -0.07 8.85 16 14 O -0.54 -10.59 14.58 5.55 0.08 -10.51 16 15 C 0.03 0.44 1.59 -68.75 -0.11 0.33 16 16 H 0.07 1.10 6.05 -51.93 -0.31 0.78 16 17 C 0.08 1.05 6.27 37.21 0.23 1.28 16 18 O -0.38 -4.85 10.83 -35.23 -0.38 -5.23 16 19 C 0.06 0.61 7.01 37.21 0.26 0.87 16 20 C 0.01 0.15 4.38 -3.71 -0.02 0.13 16 21 N -0.51 -6.92 4.42 -227.74 -1.01 -7.93 16 22 C 0.06 0.83 4.55 -3.82 -0.02 0.81 16 23 C -0.11 -1.13 2.83 -89.81 -0.25 -1.39 16 24 C -0.14 -1.29 5.91 -25.82 -0.15 -1.45 16 25 C -0.14 -1.22 8.09 -25.82 -0.21 -1.43 16 26 C -0.13 -1.36 7.65 -25.91 -0.20 -1.56 16 27 C 0.07 1.31 6.51 -3.37 -0.02 1.29 16 28 C 0.16 3.62 5.48 -3.37 -0.02 3.60 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 32 H 0.08 1.46 6.99 -51.93 -0.36 1.10 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.10 0.88 5.06 -51.93 -0.26 0.62 16 39 H 0.04 0.48 8.04 -51.93 -0.42 0.06 16 40 H 0.09 1.51 6.44 -51.93 -0.33 1.17 16 41 H 0.03 0.49 7.81 -51.93 -0.41 0.08 16 42 H 0.10 1.05 8.01 -51.93 -0.42 0.63 16 43 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 44 H 0.07 0.53 7.02 -51.93 -0.36 0.17 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 49 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.07 1.10 5.36 -51.93 -0.28 0.82 16 51 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.10 2.35 6.24 -51.93 -0.32 2.03 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -30.01 388.74 -10.63 -40.64 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -8.92 Total: 2.57 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -0.85 Total: 8.97 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -1.39 Total: -58.17 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.30 Total: -15.74 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.01 -10.63 -40.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364398708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.270 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds