Wall clock time and date at job start Tue Mar 31 2020 21:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86810 * 120.00072 * 2 1 4 4 H 1.48502 * 109.47195 * 270.00199 * 3 2 1 5 5 H 1.48497 * 109.47007 * 30.00359 * 3 2 1 6 6 H 1.48500 * 109.46937 * 150.00431 * 3 2 1 7 7 C 1.38810 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00150 * 193.06228 * 7 2 1 9 9 N 1.36941 * 120.00011 * 13.06013 * 7 2 1 10 10 C 1.46964 * 120.59355 * 213.26268 * 9 7 2 11 11 C 1.53374 * 108.62971 * 235.20335 * 10 9 7 12 12 N 1.46960 * 108.63596 * 310.57498 * 11 10 9 13 13 C 1.34779 * 120.59539 * 235.20530 * 12 11 10 14 14 O 1.21287 * 119.99932 * 4.65347 * 13 12 11 15 15 C 1.50701 * 120.00101 * 184.65456 * 13 12 11 16 16 H 1.08991 * 109.50379 * 325.39485 * 15 13 12 17 17 C 1.53098 * 109.50532 * 85.48364 * 15 13 12 18 18 O 1.43009 * 109.25502 * 176.82584 * 17 15 13 19 19 C 1.43010 * 113.74251 * 301.32961 * 18 17 15 20 20 C 1.53093 * 109.26177 * 58.66841 * 19 18 17 21 21 N 1.47009 * 109.53979 * 205.28783 * 15 13 12 22 22 C 1.46900 * 111.00295 * 57.64944 * 21 15 13 23 23 C 1.53000 * 109.47045 * 169.99719 * 22 21 15 24 24 C 1.53781 * 113.61550 * 274.13804 * 23 22 21 25 25 C 1.53959 * 87.02104 * 220.04781 * 24 23 22 26 26 C 1.53783 * 113.61207 * 176.53220 * 23 22 21 27 27 C 1.46964 * 118.81066 * 55.48234 * 12 11 10 28 28 C 1.46963 * 120.58933 * 33.23913 * 9 7 2 29 29 H 0.97004 * 119.99800 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.61206 * 115.46195 * 10 9 7 31 31 H 1.08998 * 109.75027 * 355.02983 * 10 9 7 32 32 H 1.09005 * 109.60696 * 190.83122 * 11 10 9 33 33 H 1.09000 * 109.61102 * 70.32620 * 11 10 9 34 34 H 1.08999 * 109.50529 * 56.89505 * 17 15 13 35 35 H 1.08998 * 109.54393 * 296.78104 * 17 15 13 36 36 H 1.09004 * 109.51412 * 178.61102 * 19 18 17 37 37 H 1.09009 * 109.50653 * 298.73730 * 19 18 17 38 38 H 1.08994 * 109.51080 * 183.21608 * 20 19 18 39 39 H 1.09003 * 109.54128 * 63.10701 * 20 19 18 40 40 H 1.08994 * 109.47380 * 289.99672 * 22 21 15 41 41 H 1.08996 * 109.46806 * 50.00273 * 22 21 15 42 42 H 1.08997 * 112.85156 * 45.33388 * 23 22 21 43 43 H 1.09003 * 113.61719 * 334.57080 * 24 23 22 44 44 H 1.09000 * 113.61384 * 105.47163 * 24 23 22 45 45 H 1.08992 * 113.53842 * 270.81312 * 25 24 23 46 46 H 1.08998 * 113.73994 * 139.93825 * 25 24 23 47 47 H 1.09003 * 113.61401 * 254.52729 * 26 23 22 48 48 H 1.08999 * 113.61651 * 25.43474 * 26 23 22 49 49 H 1.09001 * 109.60961 * 64.26606 * 27 12 11 50 50 H 1.09006 * 109.60664 * 184.77413 * 27 12 11 51 51 H 1.09006 * 109.60898 * 244.53744 * 28 9 7 52 52 H 1.08997 * 109.61205 * 4.88321 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0692 -1.2143 0.2108 9 7 1.3521 -2.3726 -0.2691 10 6 1.7611 -3.6264 0.3794 11 6 2.0528 -4.6680 -0.7079 12 7 0.9246 -4.6927 -1.6493 13 6 0.2768 -5.8447 -1.9137 14 8 0.5677 -6.8561 -1.3107 15 6 -0.8089 -5.8761 -2.9583 16 1 -1.3499 -4.9300 -2.9494 17 6 -0.1839 -6.0947 -4.3387 18 8 -1.2229 -6.1977 -5.3159 19 6 -2.1470 -7.2596 -5.0641 20 6 -2.7919 -7.0530 -3.6911 21 7 -1.7393 -6.9765 -2.6675 22 6 -2.3194 -6.8348 -1.3254 23 6 -3.4572 -7.8430 -1.1524 24 6 -4.8131 -7.3368 -1.6721 25 6 -5.4443 -8.0000 -0.4344 26 6 -4.0791 -7.8346 0.2540 27 6 0.5192 -3.4399 -2.3020 28 6 0.2239 -2.3973 -1.2105 29 1 -0.4850 0.8401 0.0004 30 1 0.9575 -3.9846 1.0229 31 1 2.6586 -3.4576 0.9745 32 1 2.1697 -5.6508 -0.2511 33 1 2.9659 -4.3974 -1.2382 34 1 0.4016 -7.0141 -4.3317 35 1 0.4637 -5.2527 -4.5833 36 1 -2.9198 -7.2598 -5.8329 37 1 -1.6186 -8.2130 -5.0782 38 1 -3.4543 -7.8899 -3.4703 39 1 -3.3652 -6.1259 -3.6933 40 1 -1.5507 -7.0223 -0.5757 41 1 -2.7079 -5.8239 -1.2025 42 1 -3.1974 -8.8396 -1.5091 43 1 -4.9006 -6.2503 -1.6777 44 1 -5.1168 -7.7916 -2.6149 45 1 -5.7291 -9.0397 -0.5953 46 1 -6.2382 -7.4096 0.0230 47 1 -3.7911 -8.6910 0.8638 48 1 -3.9655 -6.8846 0.7760 49 1 1.3256 -3.0839 -2.9432 50 1 -0.3770 -3.6115 -2.8983 51 1 -0.6892 -2.6679 -0.6802 52 1 0.1051 -1.4137 -1.6650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364398708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:58 Heat of formation + Delta-G solvation = -30.442584 kcal Electronic energy + Delta-G solvation = -31677.632261 eV Core-core repulsion = 27678.380053 eV Total energy + Delta-G solvation = -3999.252208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.90410 -40.35853 -39.42841 -38.41933 -36.30313 -35.64961 -33.57053 -32.48534 -31.72405 -30.46277 -28.74744 -26.91934 -26.77425 -26.07210 -25.14586 -24.39388 -23.31283 -22.47706 -21.35173 -20.42489 -20.02639 -19.02361 -17.96414 -17.75433 -17.53375 -16.89855 -16.70216 -16.47067 -16.22333 -16.05992 -15.74920 -15.52336 -15.33766 -15.16110 -15.04749 -14.89619 -14.88346 -14.28999 -13.91741 -13.73036 -13.37561 -13.31668 -13.18954 -13.09802 -12.73477 -12.69252 -12.56899 -12.47131 -12.26779 -12.24359 -12.06345 -11.97606 -11.78042 -11.67373 -11.48859 -11.19170 -11.07672 -10.93955 -10.64696 -10.52086 -9.85933 -9.42751 -8.63586 -7.91421 -5.46303 1.45162 1.48879 1.49244 1.57964 1.85820 2.48579 2.60201 2.84439 3.24627 3.41290 3.52709 3.60689 3.68378 3.71506 3.80772 3.84612 3.95855 4.00962 4.15990 4.19280 4.23778 4.26036 4.33541 4.36555 4.48874 4.50513 4.56677 4.60016 4.62681 4.71676 4.74897 4.78307 4.80974 4.83027 4.86749 4.93103 4.96871 5.02547 5.06395 5.12056 5.17211 5.29490 5.45378 5.54031 5.56395 5.62169 5.76300 5.93469 6.03013 6.35315 6.41300 7.08603 7.10693 7.73910 8.30532 9.13631 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013100 B = 0.003297 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.857235 B = 8491.291518 C = 9176.934845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.040 4.040 3 Si 0.970 3.030 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.269 4.269 8 H 0.069 0.931 9 N -0.606 5.606 10 C 0.133 3.867 11 C 0.107 3.893 12 N -0.599 5.599 13 C 0.519 3.481 14 O -0.561 6.561 15 C 0.035 3.965 16 H 0.070 0.930 17 C 0.086 3.914 18 O -0.388 6.388 19 C 0.055 3.945 20 C 0.016 3.984 21 N -0.520 5.520 22 C 0.067 3.933 23 C -0.104 4.104 24 C -0.135 4.135 25 C -0.132 4.132 26 C -0.142 4.142 27 C 0.093 3.907 28 C 0.169 3.831 29 H 0.252 0.748 30 H 0.003 0.997 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.042 0.958 40 H 0.056 0.944 41 H 0.018 0.982 42 H 0.102 0.898 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.096 0.904 51 H -0.006 1.006 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.359 -15.799 -9.450 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.236 4.236 3 Si 0.798 3.202 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.399 4.399 8 H 0.086 0.914 9 N -0.330 5.330 10 C 0.007 3.993 11 C -0.017 4.017 12 N -0.332 5.332 13 C 0.307 3.693 14 O -0.440 6.440 15 C -0.077 4.077 16 H 0.087 0.913 17 C 0.008 3.992 18 O -0.306 6.306 19 C -0.021 4.021 20 C -0.112 4.112 21 N -0.246 5.246 22 C -0.060 4.060 23 C -0.122 4.122 24 C -0.172 4.172 25 C -0.169 4.169 26 C -0.180 4.180 27 C -0.031 4.031 28 C 0.043 3.957 29 H 0.061 0.939 30 H 0.021 0.979 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.036 0.964 42 H 0.120 0.880 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.113 0.887 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.114 0.886 51 H 0.012 0.988 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.042 -16.501 -9.284 20.571 hybrid contribution -0.019 1.949 0.971 2.178 sum -8.061 -14.551 -8.313 18.597 Atomic orbital electron populations 1.70133 1.06773 1.26155 1.54790 1.25940 0.96047 1.01629 1.00032 0.85239 0.78007 0.79210 0.77766 1.20700 1.22331 1.19397 1.19496 0.91762 0.84954 1.43709 0.91375 1.44167 1.36988 1.04110 1.47711 1.21349 0.98062 0.86595 0.93301 1.22036 0.88326 0.99974 0.91364 1.48141 1.33133 1.08108 1.43822 1.20510 0.82729 0.82552 0.83547 1.90627 1.66830 1.34287 1.52236 1.22338 0.94216 0.95179 0.95984 0.91275 1.22440 0.89613 1.03212 0.83892 1.88004 1.40516 1.54148 1.47917 1.22996 0.92734 0.90163 0.96212 1.23144 0.93537 1.02884 0.91588 1.62088 1.17421 1.42089 1.03012 1.22142 0.96735 0.97122 0.90030 1.22586 0.92654 0.99153 0.97832 1.23165 0.94845 1.00255 0.98933 1.22813 0.95882 1.01829 0.96403 1.22925 0.97371 1.01812 0.95941 1.22641 1.00978 0.83685 0.95803 1.20981 0.88183 0.97175 0.89379 0.93877 0.97870 0.90785 0.89582 0.90541 0.91950 0.87008 0.85452 0.91799 0.86594 0.93995 0.92530 0.96353 0.87961 0.91226 0.89426 0.88671 0.91146 0.91072 0.91524 0.90287 0.88631 0.98834 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.34 11.30 21.65 0.24 -53.10 16 2 C -0.04 -2.16 4.98 84.86 0.42 -1.74 16 3 Si 0.97 43.18 29.57 68.60 2.03 45.20 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.27 -14.26 9.55 84.03 0.80 -13.45 16 8 H 0.07 3.51 7.86 -2.91 -0.02 3.49 16 9 N -0.61 -29.64 2.94 -697.35 -2.05 -31.70 16 10 C 0.13 5.63 6.67 86.42 0.58 6.20 16 11 C 0.11 3.84 6.60 86.42 0.57 4.41 16 12 N -0.60 -21.09 2.94 -817.13 -2.40 -23.49 16 13 C 0.52 17.83 6.07 87.66 0.53 18.36 16 14 O -0.56 -22.32 14.58 -3.05 -0.04 -22.36 16 15 C 0.03 0.99 1.59 44.18 0.07 1.06 16 16 H 0.07 2.02 6.05 -2.39 -0.01 2.00 16 17 C 0.09 2.11 6.27 72.01 0.45 2.56 16 18 O -0.39 -8.95 10.83 -148.98 -1.61 -10.57 16 19 C 0.06 0.97 7.01 72.01 0.50 1.47 16 20 C 0.02 0.30 4.38 86.31 0.38 0.68 16 21 N -0.52 -13.63 4.42 -874.43 -3.86 -17.49 16 22 C 0.07 1.86 4.55 86.30 0.39 2.26 16 23 C -0.10 -2.13 2.83 -10.27 -0.03 -2.16 16 24 C -0.13 -2.19 5.91 31.18 0.18 -2.01 16 25 C -0.13 -2.00 8.09 31.18 0.25 -1.75 16 26 C -0.14 -2.82 7.65 31.12 0.24 -2.58 16 27 C 0.09 3.23 6.51 86.56 0.56 3.79 16 28 C 0.17 7.77 5.48 86.56 0.47 8.24 16 29 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 30 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.07 2.96 7.94 -2.39 -0.02 2.94 16 32 H 0.09 3.04 6.99 -2.38 -0.02 3.03 16 33 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.11 2.50 8.14 -2.39 -0.02 2.49 16 36 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.06 1.09 8.14 -2.38 -0.02 1.08 16 38 H 0.12 1.76 5.06 -2.39 -0.01 1.75 16 39 H 0.04 0.84 8.04 -2.39 -0.02 0.82 16 40 H 0.06 1.95 6.44 -2.39 -0.02 1.94 16 41 H 0.02 0.55 7.81 -2.39 -0.02 0.53 16 42 H 0.10 2.02 8.01 -2.39 -0.02 2.00 16 43 H 0.07 1.30 7.92 -2.39 -0.02 1.28 16 44 H 0.09 1.09 7.02 -2.39 -0.02 1.07 16 45 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 49 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 50 H 0.10 2.86 5.36 -2.38 -0.01 2.85 16 51 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 52 H 0.07 3.61 6.24 -2.39 -0.01 3.59 16 Total: -1.00 -65.75 388.74 -0.42 -66.17 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.90 Total: 22.00 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 6.38 Total: 25.34 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -8.07 Total: -125.78 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.66 Total: -32.93 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -65.75 -0.42 -66.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364398708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.727 kcal (2) G-P(sol) polarization free energy of solvation -65.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds