Wall clock time and date at job start Tue Mar 31 2020 21:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99866 * 2 1 4 4 H 1.48501 * 109.46933 * 274.99408 * 3 2 1 5 5 H 1.48496 * 109.46955 * 34.99518 * 3 2 1 6 6 H 1.48501 * 109.46951 * 154.99538 * 3 2 1 7 7 C 1.38805 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99993 * 174.75337 * 7 2 1 9 9 N 1.36940 * 120.00357 * 354.76110 * 7 2 1 10 10 C 1.47802 * 134.58313 * 4.79095 * 9 7 2 11 11 C 1.53943 * 86.16152 * 204.57802 * 10 9 7 12 12 C 1.47576 * 134.48943 * 184.84357 * 9 7 2 13 13 H 1.09003 * 113.77067 * 269.77820 * 12 9 7 14 14 C 1.52997 * 113.77489 * 41.06576 * 12 9 7 15 15 N 1.46494 * 109.47510 * 283.65471 * 14 12 9 16 16 C 1.34770 * 120.00404 * 180.02562 * 15 14 12 17 17 O 1.21273 * 119.99969 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00173 * 179.97438 * 16 15 14 19 19 H 1.09004 * 109.53976 * 300.10715 * 18 16 15 20 20 C 1.53102 * 109.50522 * 60.21353 * 18 16 15 21 21 O 1.43022 * 109.25629 * 176.78580 * 20 18 16 22 22 C 1.43013 * 113.73828 * 301.33160 * 21 20 18 23 23 C 1.53101 * 109.26137 * 58.66897 * 22 21 20 24 24 N 1.47010 * 109.51006 * 179.97438 * 18 16 15 25 25 C 1.46899 * 110.99904 * 57.66942 * 24 18 16 26 26 C 1.52999 * 109.46931 * 175.42504 * 25 24 18 27 27 C 1.53780 * 113.61313 * 181.47224 * 26 25 24 28 28 C 1.53781 * 87.08210 * 220.01476 * 27 26 25 29 29 C 1.53777 * 87.17053 * 25.39047 * 28 27 26 30 30 H 0.97001 * 119.99554 * 0.02562 * 1 2 3 31 31 H 1.09000 * 113.66722 * 90.26956 * 10 9 7 32 32 H 1.09001 * 113.93912 * 318.92824 * 10 9 7 33 33 H 1.09000 * 113.73977 * 222.13682 * 11 10 9 34 34 H 1.09007 * 113.74125 * 90.83318 * 11 10 9 35 35 H 1.09000 * 109.47355 * 163.64641 * 14 12 9 36 36 H 1.09001 * 109.46665 * 43.65655 * 14 12 9 37 37 H 0.97009 * 119.99400 * 359.97438 * 15 14 12 38 38 H 1.08997 * 109.50856 * 296.71655 * 20 18 16 39 39 H 1.08992 * 109.51098 * 56.80815 * 20 18 16 40 40 H 1.08998 * 109.51050 * 178.60642 * 22 21 20 41 41 H 1.09005 * 109.50433 * 298.68790 * 22 21 20 42 42 H 1.08998 * 109.50766 * 183.21909 * 23 22 21 43 43 H 1.08994 * 109.50290 * 63.08914 * 23 22 21 44 44 H 1.08994 * 109.47268 * 55.42237 * 25 24 18 45 45 H 1.09000 * 109.47021 * 295.42213 * 25 24 18 46 46 H 1.09004 * 112.91089 * 312.71925 * 26 25 24 47 47 H 1.08999 * 113.61728 * 105.47049 * 27 26 25 48 48 H 1.09004 * 113.61519 * 334.56114 * 27 26 25 49 49 H 1.09002 * 113.61533 * 139.97811 * 28 27 26 50 50 H 1.08997 * 113.61792 * 270.80120 * 28 27 26 51 51 H 1.09005 * 113.62000 * 89.15830 * 29 28 27 52 52 H 1.08996 * 113.61635 * 220.05716 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5966 1.4120 0.5918 7 6 2.0102 -1.2021 0.0005 8 1 3.0869 -1.2041 -0.0850 9 7 1.3299 -2.3855 0.1093 10 6 -0.0992 -2.7606 0.1519 11 6 0.3613 -4.0239 0.9015 12 6 1.7296 -3.8008 0.2324 13 1 1.8391 -4.3112 -0.7245 14 6 2.9182 -4.0268 1.1688 15 7 4.1555 -3.6303 0.4921 16 6 5.3379 -3.7429 1.1290 17 8 5.3776 -4.1721 2.2625 18 6 6.6107 -3.3356 0.4325 19 1 6.7393 -3.9325 -0.4704 20 6 6.5369 -1.8527 0.0589 21 8 7.7758 -1.4534 -0.5339 22 6 8.9100 -1.6506 0.3146 23 6 9.0078 -3.1315 0.6909 24 7 7.7534 -3.5523 1.3317 25 6 7.8268 -4.9553 1.7609 26 6 9.0886 -5.1664 2.6001 27 6 9.2792 -6.6178 3.0713 28 6 9.7521 -6.0367 4.4143 29 6 8.9149 -4.7901 4.0828 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5276 -2.9638 -0.8296 32 1 -0.7142 -2.0919 0.7541 33 1 -0.1425 -4.9345 0.5775 34 1 0.3789 -3.9091 1.9854 35 1 2.9733 -5.0816 1.4381 36 1 2.7893 -3.4280 2.0705 37 1 4.1237 -3.2873 -0.4148 38 1 5.7261 -1.6965 -0.6526 39 1 6.3539 -1.2601 0.9551 40 1 9.8153 -1.3483 -0.2117 41 1 8.7971 -1.0515 1.2182 42 1 9.8369 -3.2771 1.3833 43 1 9.1748 -3.7250 -0.2079 44 1 7.8610 -5.6020 0.8842 45 1 6.9482 -5.1990 2.3581 46 1 9.9793 -4.7353 2.1430 47 1 10.0580 -7.1542 2.5293 48 1 8.3478 -7.1797 3.1424 49 1 9.3887 -6.5888 5.2811 50 1 10.8243 -5.8448 4.4537 51 1 7.8837 -4.8513 4.4308 52 1 9.3999 -3.8531 4.3561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038552829.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:11 Heat of formation + Delta-G solvation = 12.032378 kcal Electronic energy + Delta-G solvation = -31018.314540 eV Core-core repulsion = 27020.904185 eV Total energy + Delta-G solvation = -3997.410355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.61311 -38.98539 -38.50949 -37.82076 -35.41428 -34.09001 -32.25167 -31.63826 -29.50072 -28.03807 -27.60834 -25.94886 -25.62796 -24.72981 -23.39078 -22.44372 -22.19550 -21.03708 -19.97837 -19.33543 -19.07870 -17.52932 -16.61603 -16.50025 -16.34805 -15.86630 -15.57596 -15.21729 -15.08956 -14.94534 -14.64803 -14.44081 -14.05082 -14.00285 -13.81048 -13.45638 -13.14400 -12.87370 -12.60274 -12.49071 -12.24556 -11.89652 -11.85010 -11.65086 -11.43458 -11.17911 -11.14623 -11.04170 -10.96550 -10.72302 -10.57108 -10.50022 -10.32832 -10.26925 -10.01548 -9.83298 -9.77586 -9.58190 -9.19055 -8.76986 -8.64669 -8.35444 -6.92019 -5.78784 -3.11138 2.80760 3.23550 3.37780 3.44250 3.45305 3.62071 3.88566 4.41205 4.52029 4.56329 4.61900 4.70602 4.79669 4.82877 4.89251 4.96744 5.09394 5.11434 5.15885 5.27035 5.37591 5.41511 5.51760 5.57601 5.58610 5.59992 5.61954 5.68146 5.69940 5.71755 5.76003 5.85904 5.88762 5.96529 6.02721 6.07372 6.21624 6.28458 6.37693 6.44317 6.59568 6.68852 6.79676 6.85678 6.93039 7.00631 7.21385 7.39776 7.56235 7.82363 7.95911 8.49621 9.01050 9.69225 10.57351 11.37935 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.003382 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.362684 B = 8278.358352 C = 9740.885720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.904 3.096 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.156 3.844 11 C -0.155 4.155 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.125 3.875 15 N -0.711 5.711 16 C 0.519 3.481 17 O -0.529 6.529 18 C 0.032 3.968 19 H 0.071 0.929 20 C 0.074 3.926 21 O -0.379 6.379 22 C 0.060 3.940 23 C 0.014 3.986 24 N -0.510 5.510 25 C 0.049 3.951 26 C -0.111 4.111 27 C -0.135 4.135 28 C -0.146 4.146 29 C -0.123 4.123 30 H 0.253 0.747 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.402 0.598 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.040 0.960 44 H 0.023 0.977 45 H 0.117 0.883 46 H 0.087 0.913 47 H 0.062 0.938 48 H 0.081 0.919 49 H 0.065 0.935 50 H 0.075 0.925 51 H 0.086 0.914 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.178 -11.385 2.267 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.735 3.265 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.031 3.969 11 C -0.194 4.194 12 C 0.018 3.982 13 H 0.066 0.934 14 C 0.001 3.999 15 N -0.362 5.362 16 C 0.303 3.697 17 O -0.406 6.406 18 C -0.080 4.080 19 H 0.089 0.911 20 C -0.004 4.004 21 O -0.297 6.297 22 C -0.018 4.018 23 C -0.114 4.114 24 N -0.235 5.235 25 C -0.078 4.078 26 C -0.130 4.130 27 C -0.173 4.173 28 C -0.183 4.183 29 C -0.160 4.160 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.236 0.764 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.059 0.941 44 H 0.041 0.959 45 H 0.135 0.865 46 H 0.105 0.895 47 H 0.081 0.919 48 H 0.100 0.900 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.105 0.895 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.147 -10.957 3.304 20.616 hybrid contribution 0.581 0.514 -1.167 1.401 sum 17.729 -10.443 2.137 20.687 Atomic orbital electron populations 1.69824 1.05006 1.25261 1.56403 1.24757 0.95585 0.97408 1.02415 0.86224 0.78896 0.83920 0.77509 1.21676 1.21616 1.20451 1.18890 0.90302 0.81943 1.43563 0.90497 1.46116 1.02230 0.98897 1.85624 1.22277 0.88052 0.90514 0.96023 1.23744 0.96172 0.98989 1.00491 1.22501 0.92331 0.88081 0.95267 0.93398 1.21761 0.82401 0.98816 0.96946 1.45980 1.06255 1.65231 1.18696 1.20048 0.84501 0.78535 0.86581 1.90561 1.86400 1.45732 1.17909 1.22297 0.91234 0.99478 0.95003 0.91106 1.22644 0.86945 0.90966 0.99810 1.88020 1.15039 1.84790 1.41827 1.22718 0.89336 0.94576 0.95129 1.22928 0.93403 0.96927 0.98150 1.62005 1.01084 1.22422 1.38027 1.22639 1.00375 0.86379 0.98385 1.22692 0.97695 0.96546 0.96039 1.22896 1.01353 0.96014 0.97031 1.22838 0.99758 0.98276 0.97445 1.22864 1.00764 0.97213 0.95160 0.93688 0.95661 0.90693 0.92815 0.90485 0.92269 0.90870 0.76367 0.87444 0.91242 0.88472 0.92048 0.88875 0.94131 0.95866 0.86502 0.89503 0.91906 0.90038 0.91653 0.90642 0.89535 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 11.38 55.49 0.63 -25.98 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 21.79 29.56 -169.99 -5.02 16.77 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.22 -5.72 10.50 -15.06 -0.16 -5.88 16 8 H 0.08 1.90 7.49 -52.48 -0.39 1.50 16 9 N -0.60 -14.25 3.58 -169.76 -0.61 -14.86 16 10 C 0.16 3.51 7.58 -2.85 -0.02 3.49 16 11 C -0.16 -2.76 7.86 -25.80 -0.20 -2.96 16 12 C 0.13 2.33 4.32 -66.87 -0.29 2.04 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.13 2.17 5.54 -4.05 -0.02 2.15 16 15 N -0.71 -11.46 5.31 -60.30 -0.32 -11.78 16 16 C 0.52 8.39 6.88 -10.99 -0.08 8.31 16 17 O -0.53 -9.87 13.66 5.56 0.08 -9.79 16 18 C 0.03 0.44 2.39 -68.75 -0.16 0.28 16 19 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 20 C 0.07 1.06 6.16 37.21 0.23 1.29 16 21 O -0.38 -5.25 10.83 -35.23 -0.38 -5.64 16 22 C 0.06 0.65 7.01 37.21 0.26 0.91 16 23 C 0.01 0.15 5.20 -3.71 -0.02 0.13 16 24 N -0.51 -6.65 4.47 -227.73 -1.02 -7.67 16 25 C 0.05 0.61 4.41 -3.82 -0.02 0.59 16 26 C -0.11 -1.13 3.39 -89.72 -0.30 -1.44 16 27 C -0.13 -1.22 7.64 -25.92 -0.20 -1.42 16 28 C -0.15 -1.27 8.08 -25.92 -0.21 -1.48 16 29 C -0.12 -1.29 7.65 -25.83 -0.20 -1.49 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.89 7.08 -51.93 -0.37 1.52 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.40 6.17 7.79 -40.82 -0.32 5.85 16 38 H 0.11 1.50 7.68 -51.93 -0.40 1.10 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.84 5.81 -51.93 -0.30 0.54 16 43 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.02 0.28 8.13 -51.93 -0.42 -0.14 16 45 H 0.12 1.76 5.07 -51.93 -0.26 1.50 16 46 H 0.09 0.81 5.83 -51.93 -0.30 0.50 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.09 1.07 7.95 -51.93 -0.41 0.65 16 52 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 401.56 15.07 6.05 6.05 Total: -1.00 -30.77 401.56 -11.15 -41.93 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -9.08 Total: 6.67 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.49 Total: 4.29 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -1.32 Total: -60.28 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.31 Total: -15.43 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.77 -11.15 -41.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038552829.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.960 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds