Wall clock time and date at job start Tue Mar 31 2020 21:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86807 * 120.00179 * 2 1 4 4 H 1.48498 * 109.46937 * 269.99965 * 3 2 1 5 5 H 1.48503 * 109.46918 * 29.99535 * 3 2 1 6 6 H 1.48491 * 109.47186 * 149.99763 * 3 2 1 7 7 C 1.38952 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99972 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99521 * 0.02562 * 7 2 1 10 10 C 1.34770 * 119.99929 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00122 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00074 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47117 * 180.02562 * 12 10 9 14 14 C 1.46891 * 110.99902 * 177.90619 * 13 12 10 15 15 C 1.53003 * 115.54832 * 294.30631 * 14 13 12 16 16 N 1.46506 * 109.47322 * 272.74756 * 15 14 13 17 17 C 1.34770 * 119.99988 * 174.95338 * 16 15 14 18 18 O 1.21287 * 119.99975 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00009 * 180.02562 * 17 16 15 20 20 C 1.53008 * 109.47185 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.46837 * 180.02562 * 20 19 17 22 22 C 1.54266 * 110.03268 * 292.90854 * 21 20 19 23 23 C 1.54960 * 104.15824 * 217.14069 * 22 21 20 24 24 C 1.54889 * 102.78044 * 37.88548 * 23 22 21 25 25 C 1.53871 * 110.02817 * 175.69285 * 21 20 19 26 26 C 1.53001 * 117.50199 * 79.97900 * 14 13 12 27 27 C 1.53006 * 117.50280 * 148.64166 * 14 13 12 28 28 H 0.97005 * 120.00004 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99611 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.46958 * 60.00690 * 12 10 9 31 31 H 1.09000 * 109.46952 * 299.99859 * 12 10 9 32 32 H 1.00900 * 110.99481 * 301.85609 * 13 12 10 33 33 H 1.09005 * 109.47332 * 152.75106 * 15 14 13 34 34 H 1.09003 * 109.47111 * 32.75063 * 15 14 13 35 35 H 0.97003 * 119.99662 * 354.95354 * 16 15 14 36 36 H 1.08996 * 109.47360 * 300.00109 * 19 17 16 37 37 H 1.09000 * 109.46721 * 60.00320 * 19 17 16 38 38 H 1.08996 * 109.46914 * 300.00035 * 20 19 17 39 39 H 1.08998 * 109.46915 * 60.00113 * 20 19 17 40 40 H 1.09001 * 110.01508 * 54.30049 * 21 20 19 41 41 H 1.09003 * 110.48399 * 335.78718 * 22 21 20 42 42 H 1.08998 * 110.48454 * 98.43231 * 22 21 20 43 43 H 1.09005 * 110.71952 * 279.57410 * 23 22 21 44 44 H 1.09004 * 110.92292 * 156.30145 * 23 22 21 45 45 H 1.08993 * 110.48680 * 203.40296 * 24 23 22 46 46 H 1.09005 * 110.59477 * 80.81894 * 24 23 22 47 47 H 1.09005 * 110.03169 * 238.57183 * 25 21 20 48 48 H 1.09009 * 110.03673 * 359.97438 * 25 21 20 49 49 H 1.09007 * 117.49916 * 215.00055 * 26 14 13 50 50 H 1.08996 * 117.50136 * 0.02562 * 26 14 13 51 51 H 1.08998 * 117.49547 * 359.97406 * 27 14 13 52 52 H 1.08999 * 117.50134 * 144.96854 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1984 -5.9795 0.0016 14 6 1.4988 -7.2701 0.0523 15 6 0.7201 -7.5485 1.3396 16 7 1.6112 -8.1645 2.3259 17 6 1.1686 -8.4063 3.5757 18 8 0.0324 -8.1144 3.8837 19 6 2.0854 -9.0394 4.5904 20 6 1.3421 -9.2021 5.9179 21 6 2.2732 -9.8443 6.9483 22 6 2.5925 -11.2970 6.5390 23 6 2.6365 -12.0683 7.8823 24 6 1.4930 -11.4096 8.6932 25 6 1.5748 -9.9157 8.3175 26 6 0.9176 -7.8106 -1.2558 27 6 2.1612 -8.4607 -0.6440 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6168 -4.9209 -0.8887 31 1 0.6174 -4.9204 0.8914 32 1 2.8112 -5.9315 -0.7985 33 1 -0.1071 -8.2251 1.1248 34 1 0.3295 -6.6120 1.7377 35 1 2.5198 -8.3983 2.0794 36 1 2.4056 -10.0172 4.2307 37 1 2.9579 -8.4032 4.7386 38 1 1.0224 -8.2241 6.2774 39 1 0.4694 -9.8381 5.7701 40 1 3.1948 -9.2679 7.0288 41 1 1.8062 -11.6940 5.8969 42 1 3.5586 -11.3483 6.0369 43 1 3.5958 -11.9230 8.3792 44 1 2.4397 -13.1294 7.7285 45 1 1.6573 -11.5437 9.7623 46 1 0.5280 -11.8241 8.4015 47 1 2.1579 -9.3746 9.0627 48 1 0.5726 -9.4924 8.2481 49 1 -0.0195 -8.3645 -1.1993 50 1 1.0548 -7.2087 -2.1541 51 1 3.1159 -8.2861 -1.1401 52 1 2.0426 -9.4421 -0.1848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733234708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:12 Heat of formation + Delta-G solvation = -76.043659 kcal Electronic energy + Delta-G solvation = -28596.294029 eV Core-core repulsion = 24595.064411 eV Total energy + Delta-G solvation = -4001.229619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.03892 -39.00530 -38.41939 -37.74454 -34.23946 -33.94902 -33.34346 -32.61534 -31.18713 -29.18456 -28.76595 -26.85830 -26.49081 -24.08361 -23.44453 -22.56227 -21.03747 -20.27801 -19.82715 -19.66995 -19.23658 -17.89422 -17.13448 -16.49772 -16.30894 -15.95436 -15.71828 -15.31716 -15.27542 -15.00707 -14.50845 -14.20349 -14.06497 -13.89241 -13.63883 -13.57830 -13.25839 -13.11919 -12.61952 -12.50091 -12.36498 -12.13763 -11.73096 -11.64519 -11.56906 -11.48373 -11.40675 -11.32805 -11.10941 -11.06401 -10.92882 -10.85736 -10.80450 -10.57758 -10.39874 -10.35419 -10.21226 -9.79592 -9.51338 -9.05648 -8.45387 -8.08783 -7.96550 -6.41692 -3.82732 2.65057 3.02902 3.17700 3.26474 3.32373 3.63204 3.89026 4.05185 4.25142 4.27147 4.32466 4.41317 4.46940 4.61858 4.72190 4.80249 4.86542 4.92445 5.10876 5.14706 5.18441 5.25002 5.29002 5.34362 5.37386 5.40046 5.44217 5.48260 5.54041 5.56680 5.57874 5.65192 5.70559 5.75159 5.80459 5.84790 5.85709 5.92798 5.95361 5.98804 6.01394 6.08505 6.22030 6.25395 6.41136 7.11126 7.48129 7.54761 7.55100 8.05514 8.22818 8.60460 9.17316 9.53641 10.04688 10.75903 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011852 B = 0.001989 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.877122 B =14076.802295 C =15653.263583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.626 5.626 14 C 0.039 3.961 15 C 0.166 3.834 16 N -0.720 5.720 17 C 0.510 3.490 18 O -0.545 6.545 19 C -0.140 4.140 20 C -0.096 4.096 21 C -0.094 4.094 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.207 4.207 27 C -0.167 4.167 28 H 0.272 0.728 29 H 0.393 0.607 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.353 0.647 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.403 0.597 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.097 0.903 50 H 0.097 0.903 51 H 0.100 0.900 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.814 -24.914 8.871 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.257 5.257 14 C -0.054 4.054 15 C 0.041 3.959 16 N -0.371 5.371 17 C 0.297 3.703 18 O -0.423 6.423 19 C -0.180 4.180 20 C -0.134 4.134 21 C -0.113 4.113 22 C -0.159 4.159 23 C -0.164 4.164 24 C -0.163 4.163 25 C -0.160 4.160 26 C -0.247 4.247 27 C -0.205 4.205 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.238 0.762 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.116 0.884 50 H 0.116 0.884 51 H 0.118 0.882 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.787 -24.451 9.784 26.396 hybrid contribution -0.107 0.801 -1.200 1.447 sum 1.680 -23.649 8.584 25.215 Atomic orbital electron populations 1.69613 1.05937 1.28194 1.50400 1.25275 0.95645 0.99750 0.97283 0.85851 0.79253 0.80791 0.78350 1.20425 1.20899 1.19404 1.19699 0.93358 0.82201 1.47706 0.87915 1.41852 1.09237 1.04580 1.64172 1.19752 0.88348 0.84659 0.84639 1.90522 1.13709 1.87077 1.55573 1.21688 0.94405 0.90558 1.01557 1.59846 1.18600 0.98096 1.49147 1.21874 1.00421 0.90893 0.92237 1.20705 0.90892 0.98644 0.85614 1.45946 1.16864 1.63035 1.11301 1.20754 0.88442 0.78504 0.82638 1.90708 1.20004 1.52407 1.79166 1.21709 0.99224 1.02043 0.95063 1.21465 0.97690 1.01885 0.92316 1.21829 0.98633 0.96204 0.94588 1.22503 1.01427 0.94798 0.97212 1.22510 0.98714 0.99068 0.96097 1.22357 0.98812 0.95558 0.99586 1.22213 1.00961 0.96482 0.96338 1.23664 0.97979 1.05010 0.98088 1.23148 0.97538 0.96498 1.03304 0.91836 0.77422 0.93465 0.89438 0.82625 0.91247 0.90225 0.76230 0.89067 0.88793 0.91099 0.91201 0.90919 0.91442 0.91715 0.91657 0.91830 0.91967 0.91730 0.91902 0.91469 0.88431 0.88426 0.88157 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.72 13.05 55.50 0.72 -23.99 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 10 C 0.44 10.44 7.82 -10.99 -0.09 10.35 16 11 O -0.58 -15.82 15.83 5.54 0.09 -15.73 16 12 C 0.05 0.88 6.03 -4.97 -0.03 0.85 16 13 N -0.63 -9.71 6.26 -101.22 -0.63 -10.34 16 14 C 0.04 0.46 1.90 -131.60 -0.25 0.21 16 15 C 0.17 2.04 5.74 -4.04 -0.02 2.02 16 16 N -0.72 -7.96 5.47 -60.29 -0.33 -8.29 16 17 C 0.51 6.25 7.83 -10.99 -0.09 6.16 16 18 O -0.55 -8.90 15.98 5.55 0.09 -8.81 16 19 C -0.14 -1.20 5.55 -27.88 -0.15 -1.36 16 20 C -0.10 -0.87 3.63 -26.73 -0.10 -0.97 16 21 C -0.09 -0.69 2.93 -89.50 -0.26 -0.95 16 22 C -0.12 -0.78 5.50 -25.03 -0.14 -0.92 16 23 C -0.13 -0.78 6.91 -24.70 -0.17 -0.95 16 24 C -0.13 -0.82 6.83 -25.07 -0.17 -0.99 16 25 C -0.12 -0.90 6.46 -25.62 -0.17 -1.06 16 26 C -0.21 -2.07 10.07 -26.69 -0.27 -2.34 16 27 C -0.17 -1.52 9.56 -26.69 -0.26 -1.78 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.51 6.55 -51.93 -0.34 1.17 16 32 H 0.35 5.58 8.38 -39.29 -0.33 5.25 16 33 H 0.07 0.80 7.89 -51.93 -0.41 0.39 16 34 H 0.08 1.19 6.46 -51.93 -0.34 0.85 16 35 H 0.40 3.66 8.17 -40.82 -0.33 3.33 16 36 H 0.09 0.59 7.48 -51.93 -0.39 0.20 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 39 H 0.07 0.70 7.98 -51.93 -0.41 0.28 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.45 7.77 -51.93 -0.40 0.05 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.53 7.67 -51.92 -0.40 0.13 16 49 H 0.10 0.88 8.04 -51.93 -0.42 0.46 16 50 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 52 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 420.25 15.07 6.33 6.33 Total: -1.00 -33.01 420.25 -10.31 -43.31 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -9.10 Total: 15.59 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -2.40 Total: 0.20 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.30 Total: -57.07 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.18 Total: -24.55 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.01 -10.31 -43.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733234708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.731 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds