Wall clock time and date at job start Tue Mar 31 2020 21:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86807 * 120.00179 * 2 1 4 4 H 1.48498 * 109.46937 * 269.99965 * 3 2 1 5 5 H 1.48503 * 109.46918 * 29.99535 * 3 2 1 6 6 H 1.48491 * 109.47186 * 149.99763 * 3 2 1 7 7 C 1.38952 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99972 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99521 * 0.02562 * 7 2 1 10 10 C 1.34770 * 119.99929 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00122 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00074 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47117 * 180.02562 * 12 10 9 14 14 C 1.46891 * 110.99902 * 177.90619 * 13 12 10 15 15 C 1.53003 * 115.54832 * 294.30631 * 14 13 12 16 16 N 1.46506 * 109.47322 * 272.74756 * 15 14 13 17 17 C 1.34770 * 119.99988 * 174.95338 * 16 15 14 18 18 O 1.21287 * 119.99975 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00009 * 180.02562 * 17 16 15 20 20 C 1.53008 * 109.47185 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.46837 * 180.02562 * 20 19 17 22 22 C 1.54266 * 110.03268 * 292.90854 * 21 20 19 23 23 C 1.54960 * 104.15824 * 217.14069 * 22 21 20 24 24 C 1.54889 * 102.78044 * 37.88548 * 23 22 21 25 25 C 1.53871 * 110.02817 * 175.69285 * 21 20 19 26 26 C 1.53001 * 117.50199 * 79.97900 * 14 13 12 27 27 C 1.53006 * 117.50280 * 148.64166 * 14 13 12 28 28 H 0.97005 * 120.00004 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99611 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.46958 * 60.00690 * 12 10 9 31 31 H 1.09000 * 109.46952 * 299.99859 * 12 10 9 32 32 H 1.00900 * 110.99481 * 301.85609 * 13 12 10 33 33 H 1.09005 * 109.47332 * 152.75106 * 15 14 13 34 34 H 1.09003 * 109.47111 * 32.75063 * 15 14 13 35 35 H 0.97003 * 119.99662 * 354.95354 * 16 15 14 36 36 H 1.08996 * 109.47360 * 300.00109 * 19 17 16 37 37 H 1.09000 * 109.46721 * 60.00320 * 19 17 16 38 38 H 1.08996 * 109.46914 * 300.00035 * 20 19 17 39 39 H 1.08998 * 109.46915 * 60.00113 * 20 19 17 40 40 H 1.09001 * 110.01508 * 54.30049 * 21 20 19 41 41 H 1.09003 * 110.48399 * 335.78718 * 22 21 20 42 42 H 1.08998 * 110.48454 * 98.43231 * 22 21 20 43 43 H 1.09005 * 110.71952 * 279.57410 * 23 22 21 44 44 H 1.09004 * 110.92292 * 156.30145 * 23 22 21 45 45 H 1.08993 * 110.48680 * 203.40296 * 24 23 22 46 46 H 1.09005 * 110.59477 * 80.81894 * 24 23 22 47 47 H 1.09005 * 110.03169 * 238.57183 * 25 21 20 48 48 H 1.09009 * 110.03673 * 359.97438 * 25 21 20 49 49 H 1.09007 * 117.49916 * 215.00055 * 26 14 13 50 50 H 1.08996 * 117.50136 * 0.02562 * 26 14 13 51 51 H 1.08998 * 117.49547 * 359.97406 * 27 14 13 52 52 H 1.08999 * 117.50134 * 144.96854 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1984 -5.9795 0.0016 14 6 1.4988 -7.2701 0.0523 15 6 0.7201 -7.5485 1.3396 16 7 1.6112 -8.1645 2.3259 17 6 1.1686 -8.4063 3.5757 18 8 0.0324 -8.1144 3.8837 19 6 2.0854 -9.0394 4.5904 20 6 1.3421 -9.2021 5.9179 21 6 2.2732 -9.8443 6.9483 22 6 2.5925 -11.2970 6.5390 23 6 2.6365 -12.0683 7.8823 24 6 1.4930 -11.4096 8.6932 25 6 1.5748 -9.9157 8.3175 26 6 0.9176 -7.8106 -1.2558 27 6 2.1612 -8.4607 -0.6440 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6168 -4.9209 -0.8887 31 1 0.6174 -4.9204 0.8914 32 1 2.8112 -5.9315 -0.7985 33 1 -0.1071 -8.2251 1.1248 34 1 0.3295 -6.6120 1.7377 35 1 2.5198 -8.3983 2.0794 36 1 2.4056 -10.0172 4.2307 37 1 2.9579 -8.4032 4.7386 38 1 1.0224 -8.2241 6.2774 39 1 0.4694 -9.8381 5.7701 40 1 3.1948 -9.2679 7.0288 41 1 1.8062 -11.6940 5.8969 42 1 3.5586 -11.3483 6.0369 43 1 3.5958 -11.9230 8.3792 44 1 2.4397 -13.1294 7.7285 45 1 1.6573 -11.5437 9.7623 46 1 0.5280 -11.8241 8.4015 47 1 2.1579 -9.3746 9.0627 48 1 0.5726 -9.4924 8.2481 49 1 -0.0195 -8.3645 -1.1993 50 1 1.0548 -7.2087 -2.1541 51 1 3.1159 -8.2861 -1.1401 52 1 2.0426 -9.4421 -0.1848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733234708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:11 Heat of formation + Delta-G solvation = -99.084414 kcal Electronic energy + Delta-G solvation = -28597.293152 eV Core-core repulsion = 24595.064411 eV Total energy + Delta-G solvation = -4002.228741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.01650 -40.28775 -39.40948 -38.95874 -36.04501 -35.18304 -34.06468 -33.91335 -33.21750 -29.82120 -29.39846 -28.28771 -27.57496 -25.90002 -24.18176 -23.34940 -21.59376 -21.23326 -21.09034 -20.60044 -20.42251 -19.93067 -18.18700 -17.75465 -17.20746 -17.08331 -16.63884 -16.56128 -16.38566 -16.11610 -15.84019 -15.71302 -15.46799 -14.94090 -14.63325 -14.50949 -14.16780 -14.15330 -13.88467 -13.61487 -13.54769 -13.40004 -13.06537 -12.95341 -12.85848 -12.44194 -12.41460 -12.24641 -12.13910 -11.93730 -11.88399 -11.82163 -11.67906 -11.52581 -11.47441 -11.40544 -11.24566 -11.18734 -10.80660 -10.34920 -10.04848 -10.04123 -9.28308 -8.48707 -5.98047 1.36493 1.40255 1.53445 1.69511 2.01095 2.15808 2.26576 2.64064 3.03510 3.18194 3.42359 3.59611 3.69999 3.71867 3.77768 3.81873 3.97893 4.02573 4.21388 4.24236 4.26419 4.41458 4.48887 4.55173 4.60237 4.62424 4.67854 4.73046 4.74475 4.75586 4.78224 4.83877 4.85859 4.94077 4.98753 5.03063 5.12284 5.20799 5.24319 5.26189 5.32389 5.38534 5.44056 5.48103 5.51692 5.62141 5.83227 6.04065 6.33164 6.56345 6.62220 7.09422 7.31251 7.52472 8.06977 8.68659 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011852 B = 0.001989 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.877122 B =14076.802295 C =15653.263583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.015 4.015 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.081 0.919 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.621 6.621 12 C 0.067 3.933 13 N -0.637 5.637 14 C 0.021 3.979 15 C 0.168 3.832 16 N -0.710 5.710 17 C 0.503 3.497 18 O -0.593 6.593 19 C -0.132 4.132 20 C -0.091 4.091 21 C -0.090 4.090 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.127 4.127 26 C -0.199 4.199 27 C -0.142 4.142 28 H 0.278 0.722 29 H 0.395 0.605 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.351 0.649 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.415 0.585 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.054 0.946 49 H 0.111 0.889 50 H 0.094 0.906 51 H 0.105 0.895 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.740 -26.590 8.468 28.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.099 0.901 9 N -0.210 5.210 10 C 0.226 3.774 11 O -0.507 6.507 12 C -0.065 4.065 13 N -0.268 5.268 14 C -0.072 4.072 15 C 0.044 3.956 16 N -0.362 5.362 17 C 0.292 3.708 18 O -0.474 6.474 19 C -0.171 4.171 20 C -0.129 4.129 21 C -0.108 4.108 22 C -0.157 4.157 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.164 4.164 26 C -0.240 4.240 27 C -0.180 4.180 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.171 0.829 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.252 0.748 36 H 0.139 0.861 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.073 0.927 49 H 0.130 0.870 50 H 0.113 0.887 51 H 0.124 0.876 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.719 -26.159 9.363 27.917 hybrid contribution -0.414 1.270 -1.076 1.716 sum 2.304 -24.889 8.287 26.333 Atomic orbital electron populations 1.69680 1.06910 1.29351 1.50175 1.26092 0.96571 1.02563 0.96207 0.84899 0.77841 0.76688 0.78734 1.19404 1.19623 1.19729 1.19683 0.92743 0.83941 1.50040 0.90146 1.41941 1.09316 1.04800 1.64925 1.20780 0.88248 0.86028 0.82361 1.90485 1.15605 1.87940 1.56674 1.21455 0.94135 0.88234 1.02645 1.59784 1.18729 0.98993 1.49339 1.21789 1.02344 0.90168 0.92874 1.20599 0.91526 0.97499 0.85995 1.45919 1.17254 1.62160 1.10879 1.21438 0.88256 0.77837 0.83276 1.90688 1.22243 1.54519 1.79990 1.21734 0.98446 1.03447 0.93496 1.21386 0.97845 1.00419 0.93262 1.21800 0.98197 0.96983 0.93868 1.22502 1.02013 0.93739 0.97489 1.22520 0.98597 0.99387 0.95752 1.22371 0.99035 0.94860 1.00141 1.22246 1.00353 0.97214 0.96627 1.23704 0.99203 1.04609 0.96444 1.23268 0.97356 0.95991 1.01359 0.91274 0.77103 0.91438 0.89015 0.82871 0.90297 0.93384 0.74833 0.86076 0.87455 0.93583 0.92489 0.90402 0.91633 0.90390 0.91175 0.91089 0.91373 0.92069 0.91649 0.92714 0.87041 0.88726 0.87619 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.59 13.05 21.66 0.28 -50.31 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 3 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.33 -19.29 9.68 84.04 0.81 -18.48 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.57 -30.08 5.29 -306.98 -1.62 -31.71 16 10 C 0.44 21.20 7.82 87.66 0.69 21.89 16 11 O -0.62 -34.42 15.83 -3.08 -0.05 -34.47 16 12 C 0.07 2.38 6.03 85.56 0.52 2.89 16 13 N -0.64 -19.31 6.26 -474.14 -2.97 -22.27 16 14 C 0.02 0.45 1.90 3.53 0.01 0.46 16 15 C 0.17 4.00 5.74 86.38 0.50 4.50 16 16 N -0.71 -14.81 5.47 -463.04 -2.53 -17.35 16 17 C 0.50 12.09 7.83 87.66 0.69 12.78 16 18 O -0.59 -19.89 15.98 -3.05 -0.05 -19.94 16 19 C -0.13 -2.07 5.55 29.85 0.17 -1.90 16 20 C -0.09 -1.65 3.63 30.60 0.11 -1.54 16 21 C -0.09 -1.23 2.93 -10.07 -0.03 -1.26 16 22 C -0.12 -1.30 5.50 31.69 0.17 -1.12 16 23 C -0.13 -1.30 6.91 31.91 0.22 -1.08 16 24 C -0.13 -1.54 6.83 31.67 0.22 -1.32 16 25 C -0.13 -1.82 6.46 31.32 0.20 -1.62 16 26 C -0.20 -3.46 10.07 30.62 0.31 -3.15 16 27 C -0.14 -2.14 9.56 30.62 0.29 -1.84 16 28 H 0.28 14.28 8.31 -92.70 -0.77 13.51 16 29 H 0.40 19.92 7.90 -92.71 -0.73 19.19 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.09 3.19 6.55 -2.39 -0.02 3.18 16 32 H 0.35 10.83 8.38 -89.69 -0.75 10.07 16 33 H 0.08 1.73 7.89 -2.38 -0.02 1.71 16 34 H 0.05 1.46 6.46 -2.39 -0.02 1.44 16 35 H 0.41 6.60 8.17 -92.71 -0.76 5.84 16 36 H 0.12 1.20 7.48 -2.39 -0.02 1.18 16 37 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 39 H 0.06 1.17 7.98 -2.39 -0.02 1.15 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 0.75 7.77 -2.39 -0.02 0.73 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 48 H 0.05 0.91 7.67 -2.38 -0.02 0.89 16 49 H 0.11 1.66 8.04 -2.38 -0.02 1.64 16 50 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.12 1.34 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -73.41 420.25 -0.88 -74.30 By element: Atomic # 1 Polarization: 48.71 SS G_CDS: -1.31 Total: 47.40 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.33 Total: 8.87 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -6.84 Total: -121.64 kcal Atomic # 8 Polarization: -54.31 SS G_CDS: -0.10 Total: -54.41 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -73.41 -0.88 -74.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733234708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.787 kcal (2) G-P(sol) polarization free energy of solvation -73.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds