Wall clock time and date at job start Tue Mar 31 2020 20:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99831 * 2 1 4 4 H 1.48500 * 109.46938 * 265.30689 * 3 2 1 5 5 H 1.48500 * 109.47020 * 25.30660 * 3 2 1 6 6 H 1.48499 * 109.47169 * 145.30691 * 3 2 1 7 7 C 1.38812 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99788 * 340.78736 * 7 2 1 9 9 N 1.36941 * 120.00095 * 160.78091 * 7 2 1 10 10 C 1.47424 * 125.64985 * 338.21282 * 9 7 2 11 11 C 1.54905 * 104.92692 * 204.15154 * 10 9 7 12 12 C 1.55149 * 101.58343 * 322.93227 * 11 10 9 13 13 C 1.47283 * 125.79054 * 158.20614 * 9 7 2 14 14 H 1.09004 * 109.85847 * 59.50814 * 13 9 7 15 15 C 1.53005 * 110.00452 * 298.43130 * 13 9 7 16 16 N 1.46504 * 109.46674 * 60.59350 * 15 13 9 17 17 C 1.34780 * 119.99487 * 186.22208 * 16 15 13 18 18 O 1.21278 * 120.00546 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99730 * 179.97438 * 17 16 15 20 20 N 1.46496 * 109.47467 * 180.02562 * 19 17 16 21 21 C 1.44869 * 112.61503 * 90.00064 * 20 19 17 22 22 C 1.53189 * 111.78978 * 180.20705 * 21 20 19 23 23 C 1.53048 * 109.10186 * 279.36191 * 22 21 20 24 24 C 1.51494 * 111.50556 * 58.25519 * 23 22 21 25 25 C 1.52470 * 107.04996 * 66.74457 * 24 23 22 26 26 C 1.53068 * 110.86339 * 282.13473 * 25 24 23 27 27 C 1.32040 * 112.61704 * 269.76730 * 20 19 17 28 28 O 1.21282 * 118.28947 * 351.59019 * 27 20 19 29 29 H 0.96993 * 120.00263 * 359.97438 * 1 2 3 30 30 H 1.08997 * 110.36659 * 85.25625 * 10 9 7 31 31 H 1.09001 * 110.36253 * 323.04621 * 10 9 7 32 32 H 1.08997 * 111.00588 * 81.01217 * 11 10 9 33 33 H 1.09003 * 111.00275 * 204.82115 * 11 10 9 34 34 H 1.09004 * 110.72415 * 153.86204 * 12 11 10 35 35 H 1.08999 * 110.72250 * 277.14378 * 12 11 10 36 36 H 1.09003 * 109.47277 * 180.58796 * 15 13 9 37 37 H 1.08997 * 109.47177 * 300.59300 * 15 13 9 38 38 H 0.97003 * 120.00227 * 6.22416 * 16 15 13 39 39 H 1.09007 * 109.47384 * 300.00494 * 19 17 16 40 40 H 1.09001 * 109.47431 * 59.99826 * 19 17 16 41 41 H 1.09009 * 109.01692 * 300.79699 * 21 20 19 42 42 H 1.09003 * 109.01970 * 59.68509 * 21 20 19 43 43 H 1.08999 * 109.53312 * 39.25104 * 22 21 20 44 44 H 1.09001 * 109.52878 * 159.47540 * 22 21 20 45 45 H 1.08996 * 109.07486 * 178.77157 * 23 22 21 46 46 H 1.09004 * 109.07512 * 297.80196 * 23 22 21 47 47 H 1.09001 * 109.93621 * 186.13382 * 24 23 22 48 48 H 1.09004 * 109.93518 * 307.27833 * 24 23 22 49 49 H 1.08993 * 109.19752 * 42.49044 * 25 24 23 50 50 H 1.09003 * 109.19488 * 161.77442 * 25 24 23 51 51 H 1.08996 * 109.62509 * 83.93048 * 26 25 24 52 52 H 1.09002 * 109.61566 * 204.48566 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5969 1.9892 -1.3954 5 1 1.4015 2.6793 0.5985 6 1 3.4946 1.4710 0.7969 7 6 2.0104 -1.2021 -0.0005 8 1 1.5155 -2.1115 0.3068 9 7 3.3225 -1.2349 -0.3909 10 6 3.9922 -0.2315 -1.2384 11 6 5.1824 -0.9844 -1.8835 12 6 5.6336 -1.9079 -0.7213 13 6 4.3012 -2.2766 -0.0355 14 1 3.9560 -3.2466 -0.3936 15 6 4.4916 -2.3201 1.4820 16 7 3.2139 -2.6359 2.1255 17 6 3.1101 -2.6042 3.4690 18 8 4.0742 -2.3139 4.1451 19 6 1.7957 -2.9285 4.1310 20 7 1.9422 -2.8240 5.5848 21 6 1.6506 -1.4942 6.0799 22 6 1.8144 -1.4049 7.6004 23 6 0.5595 -1.9661 8.2732 24 6 0.3037 -3.4016 7.8622 25 6 1.4400 -4.2403 8.4367 26 6 2.7087 -4.0902 7.5935 27 6 2.3049 -3.9649 6.1420 28 8 2.3190 -4.9624 5.4523 29 1 -0.4850 0.8400 0.0004 30 1 4.3528 0.5984 -0.6307 31 1 3.3105 0.1308 -2.0079 32 1 4.8549 -1.5695 -2.7429 33 1 5.9764 -0.2925 -2.1643 34 1 6.1285 -2.7993 -1.1068 35 1 6.2859 -1.3706 -0.0328 36 1 5.2247 -3.0862 1.7345 37 1 4.8446 -1.3500 1.8318 38 1 2.4427 -2.8678 1.5848 39 1 1.0347 -2.2259 3.7914 40 1 1.4968 -3.9431 3.8676 41 1 2.3279 -0.7827 5.6074 42 1 0.6246 -1.2349 5.8185 43 1 2.6837 -1.9860 7.9081 44 1 1.9493 -0.3632 7.8918 45 1 0.6855 -1.9225 9.3550 46 1 -0.2991 -1.3571 7.9900 47 1 -0.6499 -3.7400 8.2675 48 1 0.2945 -3.4809 6.7751 49 1 1.6464 -3.9140 9.4560 50 1 1.1405 -5.2883 8.4504 51 1 3.2505 -3.1966 7.9033 52 1 3.3408 -4.9685 7.7241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663503563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:45 Heat of formation + Delta-G solvation = -26.852452 kcal Electronic energy + Delta-G solvation = -31453.073228 eV Core-core repulsion = 27453.976700 eV Total energy + Delta-G solvation = -3999.096528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.09573 -38.98957 -37.82877 -37.11161 -35.17195 -33.84172 -32.71150 -31.86491 -30.08511 -30.03113 -29.14904 -26.96276 -25.95944 -24.78751 -23.59858 -22.21537 -21.34417 -20.93376 -19.87020 -19.39875 -18.71096 -17.41043 -16.86280 -16.57955 -16.47330 -15.90523 -15.67287 -15.32627 -15.13119 -14.66831 -14.46207 -14.12450 -13.81241 -13.51430 -13.42616 -13.10995 -12.98552 -12.81291 -12.65702 -12.64840 -12.56059 -12.15540 -11.79625 -11.69358 -11.48611 -11.41789 -11.28101 -11.17483 -10.98072 -10.94561 -10.87350 -10.70480 -10.55280 -10.10369 -10.05102 -9.98233 -9.59696 -9.56549 -9.45482 -8.81134 -8.47929 -8.29968 -7.12445 -6.05032 -3.38428 2.73698 3.04668 3.22642 3.28932 3.42537 3.45579 3.95758 4.46221 4.47902 4.55796 4.59764 4.70273 4.84999 4.86422 5.03567 5.09957 5.15592 5.23206 5.32477 5.36649 5.40744 5.41639 5.47851 5.54276 5.57899 5.62351 5.69856 5.77687 5.79654 5.81579 5.84048 5.90994 5.91968 5.96439 6.08185 6.09953 6.12439 6.17032 6.22889 6.28594 6.33017 6.38041 6.59661 6.74103 6.82623 7.14194 7.59975 7.72417 8.13835 8.20872 8.28863 8.67635 8.86049 9.57557 10.09654 11.10060 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.003443 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.675411 B = 8129.994946 C = 9128.146336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.276 1.276 7 C -0.239 4.239 8 H 0.090 0.910 9 N -0.603 5.603 10 C 0.108 3.892 11 C -0.130 4.130 12 C -0.123 4.123 13 C 0.145 3.855 14 H 0.050 0.950 15 C 0.117 3.883 16 N -0.700 5.700 17 C 0.502 3.498 18 O -0.560 6.560 19 C 0.056 3.944 20 N -0.577 5.577 21 C 0.125 3.875 22 C -0.151 4.151 23 C -0.119 4.119 24 C -0.138 4.138 25 C -0.113 4.113 26 C -0.143 4.143 27 C 0.537 3.463 28 O -0.556 6.556 29 H 0.264 0.736 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.410 0.590 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.065 0.935 51 H 0.096 0.904 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.844 -4.247 12.749 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.172 4.172 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.201 1.201 7 C -0.366 4.366 8 H 0.107 0.893 9 N -0.329 5.329 10 C -0.017 4.017 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.038 3.962 14 H 0.068 0.932 15 C -0.009 4.009 16 N -0.353 5.353 17 C 0.287 3.713 18 O -0.440 6.440 19 C -0.071 4.071 20 N -0.307 5.307 21 C 0.003 3.997 22 C -0.188 4.188 23 C -0.156 4.156 24 C -0.176 4.176 25 C -0.151 4.151 26 C -0.182 4.182 27 C 0.326 3.674 28 O -0.435 6.435 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.249 0.751 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.090 0.910 50 H 0.084 0.916 51 H 0.114 0.886 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.268 -4.443 13.009 14.394 hybrid contribution 0.076 1.227 -0.251 1.255 sum 4.344 -3.216 12.758 13.856 Atomic orbital electron populations 1.69794 1.05424 1.26672 1.53174 1.25015 0.95130 0.97393 0.99652 0.86933 0.79079 0.84480 0.77743 1.21323 1.23242 1.20148 1.18416 0.82603 0.94415 1.41166 0.89268 1.44928 1.07146 1.24751 1.56026 1.21985 0.93510 0.92607 0.93597 1.22711 0.98042 0.98528 0.97603 1.22516 0.96494 0.99551 0.97597 1.21365 0.89802 0.93905 0.91143 0.93203 1.21862 0.85051 0.99765 0.94219 1.46027 1.14654 1.68601 1.05991 1.20832 0.90350 0.77213 0.82910 1.90607 1.39619 1.49781 1.64002 1.21674 0.96604 1.06347 0.82483 1.46543 1.66855 1.10023 1.07315 1.21313 1.01332 0.82006 0.95028 1.22297 0.99783 1.02602 0.94082 1.21402 0.97775 0.96256 1.00215 1.21587 0.98275 0.95261 1.02443 1.21430 0.93855 1.00921 0.98847 1.22294 0.99485 1.04604 0.91864 1.19642 0.75858 0.81960 0.89963 1.90704 1.54499 1.35025 1.63316 0.92655 0.95672 0.92388 0.91224 0.91722 0.91270 0.91416 0.93133 0.92120 0.75063 0.87206 0.86127 0.90798 0.90864 0.89400 0.90133 0.91847 0.91918 0.91324 0.90421 0.90999 0.91572 0.88600 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.01 13.97 55.49 0.78 -25.24 16 2 C 0.03 0.74 5.46 -17.43 -0.10 0.65 16 3 Si 0.89 22.01 24.27 -169.99 -4.13 17.88 16 4 H -0.29 -6.92 6.62 56.52 0.37 -6.54 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.28 -6.92 6.50 56.52 0.37 -6.55 16 7 C -0.24 -6.05 8.94 -15.06 -0.13 -6.19 16 8 H 0.09 2.31 6.41 -52.49 -0.34 1.98 16 9 N -0.60 -13.37 2.92 -162.37 -0.47 -13.85 16 10 C 0.11 2.24 4.71 -2.53 -0.01 2.23 16 11 C -0.13 -2.07 7.08 -24.59 -0.17 -2.25 16 12 C -0.12 -1.87 6.48 -24.90 -0.16 -2.03 16 13 C 0.15 2.67 3.36 -66.80 -0.22 2.44 16 14 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 15 C 0.12 2.22 5.20 -4.04 -0.02 2.19 16 16 N -0.70 -13.54 4.81 -60.29 -0.29 -13.83 16 17 C 0.50 9.78 7.80 -10.99 -0.09 9.69 16 18 O -0.56 -12.27 16.34 5.56 0.09 -12.18 16 19 C 0.06 0.93 5.37 -5.20 -0.03 0.90 16 20 N -0.58 -8.45 1.50 -176.79 -0.27 -8.72 16 21 C 0.13 1.54 5.19 -4.82 -0.02 1.51 16 22 C -0.15 -1.41 5.63 -26.61 -0.15 -1.56 16 23 C -0.12 -0.98 5.21 -27.47 -0.14 -1.13 16 24 C -0.14 -1.31 5.65 -27.76 -0.16 -1.47 16 25 C -0.11 -1.03 5.61 -26.97 -0.15 -1.18 16 26 C -0.14 -1.63 5.54 -27.61 -0.15 -1.78 16 27 C 0.54 8.24 5.23 -11.95 -0.06 8.18 16 28 O -0.56 -10.50 15.59 5.56 0.09 -10.41 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.03 0.56 5.35 -51.93 -0.28 0.28 16 31 H 0.06 1.28 6.82 -51.93 -0.35 0.93 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.27 8.11 -51.93 -0.42 0.85 16 38 H 0.41 7.96 5.80 -40.82 -0.24 7.72 16 39 H 0.11 1.69 7.78 -51.92 -0.40 1.29 16 40 H 0.12 2.01 6.58 -51.93 -0.34 1.67 16 41 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 42 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 43 H 0.09 0.85 4.13 -51.93 -0.21 0.63 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.44 7.84 -51.93 -0.41 0.04 16 46 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 0.92 4.91 -51.93 -0.25 0.66 16 49 H 0.07 0.52 7.72 -51.93 -0.40 0.12 16 50 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.10 0.98 5.09 -51.93 -0.26 0.72 16 52 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -32.72 382.24 -8.80 -41.52 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -8.58 Total: 8.86 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -1.78 Total: 10.21 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.25 Total: -61.64 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.18 Total: -22.59 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.13 Total: 17.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.72 -8.80 -41.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.666 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds