Wall clock time and date at job start Tue Mar 31 2020 20:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99831 * 2 1 4 4 H 1.48500 * 109.46938 * 265.30689 * 3 2 1 5 5 H 1.48500 * 109.47020 * 25.30660 * 3 2 1 6 6 H 1.48499 * 109.47169 * 145.30691 * 3 2 1 7 7 C 1.38812 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99788 * 340.78736 * 7 2 1 9 9 N 1.36941 * 120.00095 * 160.78091 * 7 2 1 10 10 C 1.47424 * 125.64985 * 338.21282 * 9 7 2 11 11 C 1.54905 * 104.92692 * 204.15154 * 10 9 7 12 12 C 1.55149 * 101.58343 * 322.93227 * 11 10 9 13 13 C 1.47283 * 125.79054 * 158.20614 * 9 7 2 14 14 H 1.09004 * 109.85847 * 59.50814 * 13 9 7 15 15 C 1.53005 * 110.00452 * 298.43130 * 13 9 7 16 16 N 1.46504 * 109.46674 * 60.59350 * 15 13 9 17 17 C 1.34780 * 119.99487 * 186.22208 * 16 15 13 18 18 O 1.21278 * 120.00546 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99730 * 179.97438 * 17 16 15 20 20 N 1.46496 * 109.47467 * 180.02562 * 19 17 16 21 21 C 1.44869 * 112.61503 * 90.00064 * 20 19 17 22 22 C 1.53189 * 111.78978 * 180.20705 * 21 20 19 23 23 C 1.53048 * 109.10186 * 279.36191 * 22 21 20 24 24 C 1.51494 * 111.50556 * 58.25519 * 23 22 21 25 25 C 1.52470 * 107.04996 * 66.74457 * 24 23 22 26 26 C 1.53068 * 110.86339 * 282.13473 * 25 24 23 27 27 C 1.32040 * 112.61704 * 269.76730 * 20 19 17 28 28 O 1.21282 * 118.28947 * 351.59019 * 27 20 19 29 29 H 0.96993 * 120.00263 * 359.97438 * 1 2 3 30 30 H 1.08997 * 110.36659 * 85.25625 * 10 9 7 31 31 H 1.09001 * 110.36253 * 323.04621 * 10 9 7 32 32 H 1.08997 * 111.00588 * 81.01217 * 11 10 9 33 33 H 1.09003 * 111.00275 * 204.82115 * 11 10 9 34 34 H 1.09004 * 110.72415 * 153.86204 * 12 11 10 35 35 H 1.08999 * 110.72250 * 277.14378 * 12 11 10 36 36 H 1.09003 * 109.47277 * 180.58796 * 15 13 9 37 37 H 1.08997 * 109.47177 * 300.59300 * 15 13 9 38 38 H 0.97003 * 120.00227 * 6.22416 * 16 15 13 39 39 H 1.09007 * 109.47384 * 300.00494 * 19 17 16 40 40 H 1.09001 * 109.47431 * 59.99826 * 19 17 16 41 41 H 1.09009 * 109.01692 * 300.79699 * 21 20 19 42 42 H 1.09003 * 109.01970 * 59.68509 * 21 20 19 43 43 H 1.08999 * 109.53312 * 39.25104 * 22 21 20 44 44 H 1.09001 * 109.52878 * 159.47540 * 22 21 20 45 45 H 1.08996 * 109.07486 * 178.77157 * 23 22 21 46 46 H 1.09004 * 109.07512 * 297.80196 * 23 22 21 47 47 H 1.09001 * 109.93621 * 186.13382 * 24 23 22 48 48 H 1.09004 * 109.93518 * 307.27833 * 24 23 22 49 49 H 1.08993 * 109.19752 * 42.49044 * 25 24 23 50 50 H 1.09003 * 109.19488 * 161.77442 * 25 24 23 51 51 H 1.08996 * 109.62509 * 83.93048 * 26 25 24 52 52 H 1.09002 * 109.61566 * 204.48566 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5969 1.9892 -1.3954 5 1 1.4015 2.6793 0.5985 6 1 3.4946 1.4710 0.7969 7 6 2.0104 -1.2021 -0.0005 8 1 1.5155 -2.1115 0.3068 9 7 3.3225 -1.2349 -0.3909 10 6 3.9922 -0.2315 -1.2384 11 6 5.1824 -0.9844 -1.8835 12 6 5.6336 -1.9079 -0.7213 13 6 4.3012 -2.2766 -0.0355 14 1 3.9560 -3.2466 -0.3936 15 6 4.4916 -2.3201 1.4820 16 7 3.2139 -2.6359 2.1255 17 6 3.1101 -2.6042 3.4690 18 8 4.0742 -2.3139 4.1451 19 6 1.7957 -2.9285 4.1310 20 7 1.9422 -2.8240 5.5848 21 6 1.6506 -1.4942 6.0799 22 6 1.8144 -1.4049 7.6004 23 6 0.5595 -1.9661 8.2732 24 6 0.3037 -3.4016 7.8622 25 6 1.4400 -4.2403 8.4367 26 6 2.7087 -4.0902 7.5935 27 6 2.3049 -3.9649 6.1420 28 8 2.3190 -4.9624 5.4523 29 1 -0.4850 0.8400 0.0004 30 1 4.3528 0.5984 -0.6307 31 1 3.3105 0.1308 -2.0079 32 1 4.8549 -1.5695 -2.7429 33 1 5.9764 -0.2925 -2.1643 34 1 6.1285 -2.7993 -1.1068 35 1 6.2859 -1.3706 -0.0328 36 1 5.2247 -3.0862 1.7345 37 1 4.8446 -1.3500 1.8318 38 1 2.4427 -2.8678 1.5848 39 1 1.0347 -2.2259 3.7914 40 1 1.4968 -3.9431 3.8676 41 1 2.3279 -0.7827 5.6074 42 1 0.6246 -1.2349 5.8185 43 1 2.6837 -1.9860 7.9081 44 1 1.9493 -0.3632 7.8918 45 1 0.6855 -1.9225 9.3550 46 1 -0.2991 -1.3571 7.9900 47 1 -0.6499 -3.7400 8.2675 48 1 0.2945 -3.4809 6.7751 49 1 1.6464 -3.9140 9.4560 50 1 1.1405 -5.2883 8.4504 51 1 3.2505 -3.1966 7.9033 52 1 3.3408 -4.9685 7.7241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663503563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:44 Heat of formation + Delta-G solvation = -48.055423 kcal Electronic energy + Delta-G solvation = -31453.992658 eV Core-core repulsion = 27453.976700 eV Total energy + Delta-G solvation = -4000.015958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.27424 -40.51032 -39.36857 -38.13976 -36.28941 -35.43969 -34.63224 -32.78724 -31.80070 -31.43778 -30.28332 -28.21403 -26.93195 -26.43645 -25.27596 -23.09546 -22.71942 -21.97994 -21.46371 -20.86029 -19.70766 -19.10165 -18.28828 -17.81661 -17.70726 -17.29737 -17.10558 -16.88419 -16.43623 -16.00982 -15.89770 -15.19468 -15.12384 -14.93674 -14.89346 -14.68038 -14.45654 -14.17098 -13.99825 -13.62807 -13.57284 -13.41375 -13.12616 -13.01393 -12.89074 -12.81170 -12.66463 -12.43176 -12.30241 -12.29223 -12.07057 -11.77254 -11.69108 -11.68509 -11.59162 -11.29839 -11.06889 -10.87208 -10.81221 -10.73408 -9.93336 -9.75342 -9.01689 -8.14305 -5.41855 1.27529 1.37652 1.43410 1.52320 1.64054 1.90040 2.40331 2.50837 3.12219 3.27467 3.52025 3.70193 3.80945 3.82499 3.86483 3.95075 3.97958 4.03368 4.14562 4.17083 4.21509 4.28482 4.31716 4.42644 4.44821 4.53630 4.59616 4.63339 4.70451 4.71890 4.76572 4.78525 4.93166 4.99463 5.00227 5.01148 5.05322 5.12972 5.15076 5.20896 5.23156 5.26277 5.43175 5.45701 5.50960 5.56662 5.70981 6.12345 6.57857 6.61159 6.76740 7.05468 7.26014 7.56632 8.15671 9.04135 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.003443 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.675411 B = 8129.994946 C = 9128.146336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.024 4.024 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.315 1.315 6 H -0.282 1.282 7 C -0.212 4.212 8 H 0.078 0.922 9 N -0.619 5.619 10 C 0.096 3.904 11 C -0.117 4.117 12 C -0.114 4.114 13 C 0.142 3.858 14 H 0.058 0.942 15 C 0.121 3.879 16 N -0.703 5.703 17 C 0.498 3.502 18 O -0.586 6.586 19 C 0.061 3.939 20 N -0.571 5.571 21 C 0.119 3.881 22 C -0.144 4.144 23 C -0.113 4.113 24 C -0.140 4.140 25 C -0.107 4.107 26 C -0.139 4.139 27 C 0.528 3.472 28 O -0.600 6.600 29 H 0.259 0.741 30 H 0.014 0.986 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.038 0.962 38 H 0.409 0.591 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.049 0.951 49 H 0.102 0.898 50 H 0.063 0.937 51 H 0.111 0.889 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.482 -4.430 13.789 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.219 4.219 3 Si 0.765 3.235 4 H -0.204 1.204 5 H -0.244 1.244 6 H -0.209 1.209 7 C -0.341 4.341 8 H 0.096 0.904 9 N -0.344 5.344 10 C -0.028 4.028 11 C -0.155 4.155 12 C -0.152 4.152 13 C 0.036 3.964 14 H 0.076 0.924 15 C -0.005 4.005 16 N -0.355 5.355 17 C 0.283 3.717 18 O -0.468 6.468 19 C -0.067 4.067 20 N -0.301 5.301 21 C -0.002 4.002 22 C -0.181 4.181 23 C -0.151 4.151 24 C -0.178 4.178 25 C -0.145 4.145 26 C -0.178 4.178 27 C 0.319 3.681 28 O -0.482 6.482 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.248 0.752 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.067 0.933 49 H 0.120 0.880 50 H 0.081 0.919 51 H 0.129 0.871 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.947 -4.614 14.042 15.932 hybrid contribution -0.391 1.203 -0.603 1.401 sum 5.557 -3.412 13.439 14.937 Atomic orbital electron populations 1.69885 1.06512 1.26703 1.56464 1.25443 0.95533 0.99553 1.01391 0.86173 0.77478 0.82041 0.77801 1.20391 1.24424 1.20864 1.18493 0.83993 0.93606 1.37979 0.90449 1.45122 1.06900 1.25866 1.56540 1.22090 0.95032 0.92692 0.92998 1.22677 0.96495 0.98618 0.97707 1.22555 0.94623 1.00991 0.97048 1.21586 0.90894 0.93050 0.90920 0.92398 1.21847 0.85115 0.99011 0.94556 1.46126 1.14891 1.68347 1.06165 1.21324 0.91005 0.76464 0.82859 1.90576 1.40720 1.51041 1.64458 1.21575 0.95093 1.06069 0.84000 1.46717 1.66291 1.10845 1.06232 1.21488 1.01142 0.80190 0.97366 1.22301 1.00482 1.03865 0.91448 1.21372 0.97099 0.95167 1.01424 1.21591 0.99088 0.96441 1.00680 1.21447 0.92382 1.00908 0.99723 1.22365 1.00853 1.05379 0.89174 1.20453 0.74855 0.81317 0.91497 1.90672 1.56397 1.36471 1.64700 0.93163 0.96871 0.94260 0.90107 0.88798 0.87689 0.90767 0.91484 0.94399 0.75234 0.86632 0.86588 0.92958 0.90030 0.89397 0.88389 0.89429 0.91612 0.90179 0.93280 0.87989 0.91864 0.87122 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.00 13.97 21.65 0.30 -55.69 16 2 C -0.02 -1.33 5.46 84.86 0.46 -0.87 16 3 Si 0.93 46.39 24.27 68.60 1.67 48.06 16 4 H -0.28 -13.19 6.62 99.48 0.66 -12.53 16 5 H -0.32 -16.06 7.11 99.48 0.71 -15.35 16 6 H -0.28 -14.12 6.50 99.48 0.65 -13.47 16 7 C -0.21 -10.87 8.94 84.03 0.75 -10.12 16 8 H 0.08 4.11 6.41 -2.91 -0.02 4.09 16 9 N -0.62 -27.06 2.92 -667.62 -1.95 -29.01 16 10 C 0.10 3.87 4.71 86.85 0.41 4.28 16 11 C -0.12 -3.30 7.08 31.98 0.23 -3.08 16 12 C -0.11 -3.04 6.48 31.78 0.21 -2.84 16 13 C 0.14 4.96 3.36 45.29 0.15 5.11 16 14 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 15 C 0.12 4.48 5.20 86.38 0.45 4.93 16 16 N -0.70 -27.65 4.81 -463.05 -2.23 -29.87 16 17 C 0.50 19.89 7.80 87.66 0.68 20.57 16 18 O -0.59 -26.15 16.34 -3.02 -0.05 -26.20 16 19 C 0.06 2.08 5.37 85.63 0.46 2.54 16 20 N -0.57 -17.05 1.50 -833.14 -1.25 -18.30 16 21 C 0.12 2.93 5.19 86.75 0.45 3.38 16 22 C -0.14 -2.42 5.63 30.67 0.17 -2.25 16 23 C -0.11 -1.56 5.21 30.12 0.16 -1.41 16 24 C -0.14 -2.42 5.65 29.93 0.17 -2.25 16 25 C -0.11 -1.71 5.61 30.44 0.17 -1.54 16 26 C -0.14 -2.98 5.54 30.03 0.17 -2.81 16 27 C 0.53 16.36 5.23 88.23 0.46 16.82 16 28 O -0.60 -23.32 15.59 -3.04 -0.05 -23.37 16 29 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.01 0.58 5.35 -2.39 -0.01 0.57 16 31 H 0.04 1.71 6.82 -2.39 -0.02 1.69 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 1.92 7.85 -2.39 -0.02 1.90 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.04 1.58 8.11 -2.39 -0.02 1.56 16 38 H 0.41 16.26 5.80 -92.71 -0.54 15.73 16 39 H 0.12 3.76 7.78 -2.38 -0.02 3.74 16 40 H 0.12 4.09 6.58 -2.39 -0.02 4.07 16 41 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.08 1.84 7.88 -2.39 -0.02 1.82 16 43 H 0.09 1.49 4.13 -2.39 -0.01 1.48 16 44 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.09 0.85 7.84 -2.39 -0.02 0.83 16 46 H 0.07 0.89 8.13 -2.38 -0.02 0.87 16 47 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.05 1.14 4.91 -2.38 -0.01 1.13 16 49 H 0.10 1.07 7.72 -2.39 -0.02 1.05 16 50 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.11 2.05 5.09 -2.39 -0.01 2.04 16 52 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -73.25 382.24 2.27 -70.98 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.28 Total: 32.93 kcal Atomic # 6 Polarization: 24.93 SS G_CDS: 5.55 Total: 30.47 kcal Atomic # 7 Polarization: -127.75 SS G_CDS: -5.13 Total: -132.88 kcal Atomic # 8 Polarization: -49.47 SS G_CDS: -0.10 Total: -49.57 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.67 Total: 48.06 kcal Total: -73.25 2.27 -70.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.929 kcal (2) G-P(sol) polarization free energy of solvation -73.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds