Wall clock time and date at job start Tue Mar 31 2020 20:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86810 * 119.99633 * 2 1 4 4 H 1.48492 * 109.47042 * 240.00202 * 3 2 1 5 5 H 1.48496 * 109.46973 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46793 * 120.00077 * 3 2 1 7 7 C 1.38810 * 120.00710 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00305 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99566 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.65152 * 14.70502 * 9 7 2 11 11 C 1.54909 * 104.83296 * 155.90792 * 10 9 7 12 12 C 1.55157 * 101.58172 * 37.01376 * 11 10 9 13 13 C 1.47021 * 125.64995 * 194.74978 * 9 7 2 14 14 H 1.08998 * 109.88329 * 300.59727 * 13 9 7 15 15 C 1.53005 * 109.88150 * 61.60157 * 13 9 7 16 16 N 1.46501 * 109.46916 * 184.49961 * 15 13 9 17 17 C 1.34783 * 119.99786 * 185.11171 * 16 15 13 18 18 O 1.21276 * 120.00020 * 0.02562 * 17 16 15 19 19 C 1.50705 * 119.99656 * 180.02562 * 17 16 15 20 20 N 1.46499 * 109.46549 * 180.02562 * 19 17 16 21 21 C 1.44100 * 112.02994 * 90.00379 * 20 19 17 22 22 C 1.53454 * 112.87926 * 179.47089 * 21 20 19 23 23 C 1.52572 * 109.38338 * 79.69544 * 22 21 20 24 24 C 1.51719 * 112.76290 * 322.89115 * 23 22 21 25 25 C 1.52381 * 106.52670 * 277.08930 * 24 23 22 26 26 C 1.53820 * 109.24027 * 63.68863 * 25 24 23 27 27 C 1.32697 * 112.02778 * 269.98052 * 20 19 17 28 28 O 1.21277 * 119.43119 * 349.76037 * 27 20 19 29 29 H 0.97002 * 120.00496 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.36162 * 274.74820 * 10 9 7 31 31 H 1.08994 * 110.36317 * 37.06838 * 10 9 7 32 32 H 1.09007 * 111.00304 * 155.08070 * 11 10 9 33 33 H 1.08995 * 111.00466 * 278.93393 * 11 10 9 34 34 H 1.08999 * 110.72030 * 206.13555 * 12 11 10 35 35 H 1.08995 * 110.72684 * 82.85893 * 12 11 10 36 36 H 1.08996 * 109.47281 * 64.50569 * 15 13 9 37 37 H 1.08995 * 109.47103 * 304.49731 * 15 13 9 38 38 H 0.97001 * 120.00243 * 5.11593 * 16 15 13 39 39 H 1.08995 * 109.47043 * 60.00495 * 19 17 16 40 40 H 1.08995 * 109.47192 * 299.99905 * 19 17 16 41 41 H 1.09001 * 108.80367 * 58.59471 * 21 20 19 42 42 H 1.08998 * 108.80008 * 300.34687 * 21 20 19 43 43 H 1.08997 * 109.48449 * 319.72519 * 22 21 20 44 44 H 1.08994 * 109.50246 * 199.67574 * 22 21 20 45 45 H 1.08996 * 108.82580 * 83.73399 * 23 22 21 46 46 H 1.09000 * 108.82531 * 202.04005 * 23 22 21 47 47 H 1.08998 * 110.04547 * 36.34461 * 24 23 22 48 48 H 1.09001 * 110.03769 * 157.84495 * 24 23 22 49 49 H 1.09000 * 109.51221 * 303.76683 * 25 24 23 50 50 H 1.08996 * 109.55384 * 183.64294 * 25 24 23 51 51 H 1.08997 * 109.81893 * 295.29669 * 26 25 24 52 52 H 1.08997 * 109.81743 * 174.38561 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1073 -2.5526 -0.3064 11 6 -0.2462 -4.0216 -0.7782 12 6 0.7641 -4.7442 0.1516 13 6 1.8978 -3.7079 0.3019 14 1 2.7035 -3.9323 -0.3970 15 6 2.4327 -3.7260 1.7353 16 7 3.0956 -5.0068 1.9929 17 6 3.5556 -5.2912 3.2274 18 8 3.4202 -4.4871 4.1251 19 6 4.2381 -6.6085 3.4922 20 7 4.6418 -6.6751 4.8989 21 6 3.6130 -7.2473 5.7300 22 6 4.0207 -7.3382 7.2066 23 6 3.8490 -5.9723 7.8644 24 6 4.2181 -4.8259 6.9418 25 6 5.7321 -4.6735 7.0241 26 6 6.4000 -5.9494 6.4836 27 6 5.8637 -6.1940 5.0894 28 8 6.5626 -5.9455 4.1298 29 1 -0.4851 0.8400 0.0004 30 1 -0.7072 -2.3830 0.5878 31 1 -0.4071 -1.8691 -1.1006 32 1 -1.2591 -4.3900 -0.6157 33 1 0.0424 -4.1249 -1.8242 34 1 1.1349 -5.6561 -0.3165 35 1 0.3106 -4.9626 1.1183 36 1 1.6055 -3.5983 2.4335 37 1 3.1477 -2.9139 1.8666 38 1 3.2036 -5.6501 1.2749 39 1 5.1192 -6.6955 2.8565 40 1 3.5499 -7.4248 3.2731 41 1 3.3843 -8.2491 5.3664 42 1 2.7156 -6.6337 5.6505 43 1 5.0635 -7.6473 7.2774 44 1 3.3898 -8.0680 7.7140 45 1 2.8090 -5.8572 8.1696 46 1 4.4806 -5.9273 8.7516 47 1 3.9212 -5.0588 5.9192 48 1 3.7320 -3.9083 7.2733 49 1 6.0267 -4.5203 8.0622 50 1 6.0456 -3.8175 6.4266 51 1 6.1564 -6.7949 7.1268 52 1 7.4807 -5.8128 6.4451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663503564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:51 Heat of formation + Delta-G solvation = -29.627829 kcal Electronic energy + Delta-G solvation = -31065.922153 eV Core-core repulsion = 27066.705276 eV Total energy + Delta-G solvation = -3999.216877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.34338 -39.07967 -37.58215 -37.38549 -35.29461 -34.21173 -32.48430 -32.05992 -30.08341 -29.44045 -28.67752 -26.83982 -26.34082 -24.76544 -23.63088 -22.25759 -21.20216 -20.47280 -20.09906 -19.46440 -18.80444 -17.67422 -16.87388 -16.69926 -16.59942 -16.04596 -15.58868 -15.21585 -14.97054 -14.68876 -14.40686 -14.25932 -13.87409 -13.65140 -13.50020 -13.20716 -13.08147 -12.92248 -12.61151 -12.32609 -12.14674 -12.02476 -11.88219 -11.68781 -11.54755 -11.44815 -11.30426 -10.95137 -10.85053 -10.76848 -10.73591 -10.24810 -10.18512 -10.12438 -9.97008 -9.86995 -9.79509 -9.78151 -9.68999 -8.70431 -8.63443 -8.56164 -6.83853 -5.76706 -3.13323 2.46240 2.80076 2.85382 3.41325 3.46107 3.47324 3.57947 4.32616 4.41931 4.49355 4.52949 4.72707 4.80039 4.88599 4.97252 5.00974 5.11311 5.28938 5.32914 5.33719 5.40012 5.42702 5.46661 5.50515 5.53126 5.59829 5.62469 5.75432 5.77734 5.80330 5.91402 5.96213 6.06555 6.13332 6.17898 6.21993 6.23263 6.44970 6.50808 6.54577 6.64186 6.77865 6.85543 7.06922 7.44054 7.50890 7.60389 7.77426 7.78920 8.00830 8.25631 8.50391 9.17703 9.78209 10.45334 11.35277 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.002947 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.118502 B = 9499.605422 C =10377.335953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.000 4.000 3 Si 0.910 3.090 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.149 4.149 12 C -0.125 4.125 13 C 0.151 3.849 14 H 0.037 0.963 15 C 0.111 3.889 16 N -0.720 5.720 17 C 0.494 3.506 18 O -0.532 6.532 19 C 0.051 3.949 20 N -0.583 5.583 21 C 0.127 3.873 22 C -0.139 4.139 23 C -0.122 4.122 24 C -0.163 4.163 25 C -0.109 4.109 26 C -0.150 4.150 27 C 0.538 3.462 28 O -0.545 6.545 29 H 0.254 0.746 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.396 0.604 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.123 0.877 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.065 0.935 51 H 0.098 0.902 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.899 -19.727 12.237 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.197 4.197 3 Si 0.740 3.260 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.188 4.188 12 C -0.163 4.163 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.014 4.014 16 N -0.371 5.371 17 C 0.278 3.722 18 O -0.409 6.409 19 C -0.077 4.077 20 N -0.315 5.315 21 C 0.005 3.995 22 C -0.176 4.176 23 C -0.159 4.159 24 C -0.200 4.200 25 C -0.147 4.147 26 C -0.189 4.189 27 C 0.327 3.673 28 O -0.423 6.423 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.229 0.771 39 H 0.141 0.859 40 H 0.121 0.879 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.141 0.859 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.083 0.917 51 H 0.116 0.884 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.112 -18.745 12.508 23.349 hybrid contribution 0.376 0.692 -0.144 0.801 sum 6.488 -18.053 12.364 22.823 Atomic orbital electron populations 1.69922 1.05023 1.25435 1.55820 1.24902 0.95661 0.97848 1.01316 0.86235 0.78618 0.83069 0.78089 1.21025 1.21534 1.20942 1.18940 0.90382 0.82200 1.44789 0.90724 1.44476 1.06422 1.01011 1.79389 1.21449 0.84817 0.90150 0.98797 1.23009 0.97536 0.99646 0.98570 1.22595 0.97088 0.96965 0.99626 1.21140 0.94509 0.88076 0.91988 0.94514 1.22218 0.96714 0.83289 0.99177 1.46086 1.59500 1.20879 1.10624 1.20994 0.78947 0.89110 0.83164 1.90603 1.57050 1.49673 1.43603 1.21748 1.02416 0.96346 0.87149 1.46587 1.15167 1.61319 1.08445 1.21154 0.89840 0.97654 0.90889 1.22133 1.02763 0.98599 0.94130 1.21350 1.01702 0.94136 0.98751 1.22065 0.95031 0.98083 1.04782 1.21533 0.96336 0.96091 1.00747 1.22507 1.01760 1.00942 0.93693 1.20012 0.79951 0.75315 0.91988 1.90722 1.56388 1.51885 1.43287 0.93554 0.95638 0.91008 0.92370 0.92301 0.92404 0.91899 0.91729 0.91581 0.77131 0.85944 0.87904 0.91340 0.90704 0.90381 0.90099 0.92290 0.92222 0.85893 0.91771 0.91412 0.91653 0.88449 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.58 55.49 0.59 -26.16 16 2 C 0.00 0.00 5.47 -17.43 -0.10 -0.09 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.23 -6.49 9.72 -15.06 -0.15 -6.64 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.59 -14.63 3.13 -162.57 -0.51 -15.14 16 10 C 0.17 4.10 5.41 -2.53 -0.01 4.08 16 11 C -0.15 -2.69 7.08 -24.58 -0.17 -2.86 16 12 C -0.12 -2.02 6.20 -24.89 -0.15 -2.18 16 13 C 0.15 2.97 3.19 -66.95 -0.21 2.75 16 14 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 15 C 0.11 2.14 5.10 -4.04 -0.02 2.12 16 16 N -0.72 -10.56 5.36 -60.29 -0.32 -10.88 16 17 C 0.49 7.44 7.78 -10.98 -0.09 7.36 16 18 O -0.53 -9.97 13.71 5.56 0.08 -9.89 16 19 C 0.05 0.57 5.37 -5.19 -0.03 0.54 16 20 N -0.58 -6.43 1.65 -176.96 -0.29 -6.72 16 21 C 0.13 1.04 4.74 -5.08 -0.02 1.01 16 22 C -0.14 -0.93 5.60 -26.72 -0.15 -1.08 16 23 C -0.12 -1.02 5.18 -27.60 -0.14 -1.17 16 24 C -0.16 -1.93 5.63 -27.70 -0.16 -2.09 16 25 C -0.11 -1.20 5.52 -26.62 -0.15 -1.35 16 26 C -0.15 -1.52 5.63 -27.13 -0.15 -1.68 16 27 C 0.54 7.09 6.14 -11.57 -0.07 7.02 16 28 O -0.55 -9.19 15.72 5.56 0.09 -9.10 16 29 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16 31 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.01 7.78 -51.93 -0.40 0.60 16 36 H 0.06 1.38 8.03 -51.93 -0.42 0.96 16 37 H 0.07 1.49 7.86 -51.93 -0.41 1.09 16 38 H 0.40 4.53 8.40 -40.82 -0.34 4.18 16 39 H 0.12 1.44 6.58 -51.93 -0.34 1.10 16 40 H 0.10 0.76 7.72 -51.93 -0.40 0.35 16 41 H 0.07 0.40 8.01 -51.93 -0.42 -0.02 16 42 H 0.07 0.72 7.46 -51.93 -0.39 0.34 16 43 H 0.08 0.49 5.06 -51.93 -0.26 0.23 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.44 7.62 -51.93 -0.40 0.04 16 47 H 0.12 1.72 1.38 -51.93 -0.07 1.65 16 48 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.07 0.60 7.86 -51.93 -0.41 0.19 16 50 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.10 0.75 4.47 -51.93 -0.23 0.52 16 52 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -34.13 387.41 -9.95 -44.08 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -8.62 Total: 4.89 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.78 Total: 5.75 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.54 Total: -58.90 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.16 Total: -19.00 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.13 -9.95 -44.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.452 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds