Wall clock time and date at job start Tue Mar 31 2020 20:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86810 * 119.99633 * 2 1 4 4 H 1.48492 * 109.47042 * 240.00202 * 3 2 1 5 5 H 1.48496 * 109.46973 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46793 * 120.00077 * 3 2 1 7 7 C 1.38810 * 120.00710 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00305 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99566 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.65152 * 14.70502 * 9 7 2 11 11 C 1.54909 * 104.83296 * 155.90792 * 10 9 7 12 12 C 1.55157 * 101.58172 * 37.01376 * 11 10 9 13 13 C 1.47021 * 125.64995 * 194.74978 * 9 7 2 14 14 H 1.08998 * 109.88329 * 300.59727 * 13 9 7 15 15 C 1.53005 * 109.88150 * 61.60157 * 13 9 7 16 16 N 1.46501 * 109.46916 * 184.49961 * 15 13 9 17 17 C 1.34783 * 119.99786 * 185.11171 * 16 15 13 18 18 O 1.21276 * 120.00020 * 0.02562 * 17 16 15 19 19 C 1.50705 * 119.99656 * 180.02562 * 17 16 15 20 20 N 1.46499 * 109.46549 * 180.02562 * 19 17 16 21 21 C 1.44100 * 112.02994 * 90.00379 * 20 19 17 22 22 C 1.53454 * 112.87926 * 179.47089 * 21 20 19 23 23 C 1.52572 * 109.38338 * 79.69544 * 22 21 20 24 24 C 1.51719 * 112.76290 * 322.89115 * 23 22 21 25 25 C 1.52381 * 106.52670 * 277.08930 * 24 23 22 26 26 C 1.53820 * 109.24027 * 63.68863 * 25 24 23 27 27 C 1.32697 * 112.02778 * 269.98052 * 20 19 17 28 28 O 1.21277 * 119.43119 * 349.76037 * 27 20 19 29 29 H 0.97002 * 120.00496 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.36162 * 274.74820 * 10 9 7 31 31 H 1.08994 * 110.36317 * 37.06838 * 10 9 7 32 32 H 1.09007 * 111.00304 * 155.08070 * 11 10 9 33 33 H 1.08995 * 111.00466 * 278.93393 * 11 10 9 34 34 H 1.08999 * 110.72030 * 206.13555 * 12 11 10 35 35 H 1.08995 * 110.72684 * 82.85893 * 12 11 10 36 36 H 1.08996 * 109.47281 * 64.50569 * 15 13 9 37 37 H 1.08995 * 109.47103 * 304.49731 * 15 13 9 38 38 H 0.97001 * 120.00243 * 5.11593 * 16 15 13 39 39 H 1.08995 * 109.47043 * 60.00495 * 19 17 16 40 40 H 1.08995 * 109.47192 * 299.99905 * 19 17 16 41 41 H 1.09001 * 108.80367 * 58.59471 * 21 20 19 42 42 H 1.08998 * 108.80008 * 300.34687 * 21 20 19 43 43 H 1.08997 * 109.48449 * 319.72519 * 22 21 20 44 44 H 1.08994 * 109.50246 * 199.67574 * 22 21 20 45 45 H 1.08996 * 108.82580 * 83.73399 * 23 22 21 46 46 H 1.09000 * 108.82531 * 202.04005 * 23 22 21 47 47 H 1.08998 * 110.04547 * 36.34461 * 24 23 22 48 48 H 1.09001 * 110.03769 * 157.84495 * 24 23 22 49 49 H 1.09000 * 109.51221 * 303.76683 * 25 24 23 50 50 H 1.08996 * 109.55384 * 183.64294 * 25 24 23 51 51 H 1.08997 * 109.81893 * 295.29669 * 26 25 24 52 52 H 1.08997 * 109.81743 * 174.38561 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1073 -2.5526 -0.3064 11 6 -0.2462 -4.0216 -0.7782 12 6 0.7641 -4.7442 0.1516 13 6 1.8978 -3.7079 0.3019 14 1 2.7035 -3.9323 -0.3970 15 6 2.4327 -3.7260 1.7353 16 7 3.0956 -5.0068 1.9929 17 6 3.5556 -5.2912 3.2274 18 8 3.4202 -4.4871 4.1251 19 6 4.2381 -6.6085 3.4922 20 7 4.6418 -6.6751 4.8989 21 6 3.6130 -7.2473 5.7300 22 6 4.0207 -7.3382 7.2066 23 6 3.8490 -5.9723 7.8644 24 6 4.2181 -4.8259 6.9418 25 6 5.7321 -4.6735 7.0241 26 6 6.4000 -5.9494 6.4836 27 6 5.8637 -6.1940 5.0894 28 8 6.5626 -5.9455 4.1298 29 1 -0.4851 0.8400 0.0004 30 1 -0.7072 -2.3830 0.5878 31 1 -0.4071 -1.8691 -1.1006 32 1 -1.2591 -4.3900 -0.6157 33 1 0.0424 -4.1249 -1.8242 34 1 1.1349 -5.6561 -0.3165 35 1 0.3106 -4.9626 1.1183 36 1 1.6055 -3.5983 2.4335 37 1 3.1477 -2.9139 1.8666 38 1 3.2036 -5.6501 1.2749 39 1 5.1192 -6.6955 2.8565 40 1 3.5499 -7.4248 3.2731 41 1 3.3843 -8.2491 5.3664 42 1 2.7156 -6.6337 5.6505 43 1 5.0635 -7.6473 7.2774 44 1 3.3898 -8.0680 7.7140 45 1 2.8090 -5.8572 8.1696 46 1 4.4806 -5.9273 8.7516 47 1 3.9212 -5.0588 5.9192 48 1 3.7320 -3.9083 7.2733 49 1 6.0267 -4.5203 8.0622 50 1 6.0456 -3.8175 6.4266 51 1 6.1564 -6.7949 7.1268 52 1 7.4807 -5.8128 6.4451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663503564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:50 Heat of formation + Delta-G solvation = -52.553015 kcal Electronic energy + Delta-G solvation = -31066.916264 eV Core-core repulsion = 27066.705276 eV Total energy + Delta-G solvation = -4000.210988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.28882 -40.39009 -39.18907 -38.27881 -36.22238 -35.69757 -34.42657 -32.83610 -31.56427 -30.94765 -29.95223 -27.90878 -27.13267 -26.63506 -25.24166 -23.03561 -22.20817 -21.98551 -21.48124 -21.04991 -19.61693 -18.99809 -18.40553 -17.79121 -17.56711 -17.19441 -16.99557 -16.49249 -16.29472 -16.05780 -15.76019 -15.63247 -15.18653 -14.81968 -14.69808 -14.45844 -14.00581 -13.98140 -13.86374 -13.66631 -13.50992 -13.32044 -13.04531 -13.01565 -12.89165 -12.81453 -12.67750 -12.32347 -12.22989 -12.08355 -11.90000 -11.73591 -11.67242 -11.59741 -11.49699 -11.40033 -11.01993 -10.86712 -10.78414 -10.70553 -10.05815 -9.63477 -8.87828 -7.91917 -5.29135 1.40279 1.43582 1.45286 1.49477 1.65087 1.95420 2.34181 2.49438 3.27636 3.57769 3.66156 3.71752 3.85364 3.87723 3.97510 3.98512 3.99135 4.07929 4.23142 4.25236 4.26094 4.36204 4.44647 4.50940 4.54231 4.59919 4.69974 4.72845 4.74067 4.79289 4.88212 4.95906 4.99609 5.00512 5.09562 5.14733 5.16515 5.21527 5.24908 5.29627 5.36115 5.44230 5.51431 5.55740 5.65152 5.76408 5.77496 6.20687 6.58677 6.59444 7.04468 7.06745 7.32280 7.73855 8.39253 9.18690 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.002947 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.118502 B = 9499.605422 C =10377.335953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.056 4.056 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.612 5.612 10 C 0.174 3.826 11 C -0.133 4.133 12 C -0.109 4.109 13 C 0.147 3.853 14 H 0.048 0.952 15 C 0.135 3.865 16 N -0.706 5.706 17 C 0.487 3.513 18 O -0.574 6.574 19 C 0.059 3.941 20 N -0.577 5.577 21 C 0.117 3.883 22 C -0.133 4.133 23 C -0.118 4.118 24 C -0.170 4.170 25 C -0.107 4.107 26 C -0.143 4.143 27 C 0.526 3.474 28 O -0.593 6.593 29 H 0.249 0.751 30 H -0.008 1.008 31 H 0.035 0.965 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.021 0.979 38 H 0.416 0.584 39 H 0.119 0.881 40 H 0.153 0.847 41 H 0.106 0.894 42 H 0.057 0.943 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.104 0.896 48 H 0.038 0.962 49 H 0.093 0.907 50 H 0.029 0.971 51 H 0.132 0.868 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.379 -23.874 12.966 27.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.250 4.250 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.336 5.336 10 C 0.049 3.951 11 C -0.172 4.172 12 C -0.146 4.146 13 C 0.039 3.961 14 H 0.066 0.934 15 C 0.008 3.992 16 N -0.359 5.359 17 C 0.274 3.726 18 O -0.454 6.454 19 C -0.069 4.069 20 N -0.307 5.307 21 C -0.004 4.004 22 C -0.170 4.170 23 C -0.156 4.156 24 C -0.207 4.207 25 C -0.145 4.145 26 C -0.182 4.182 27 C 0.317 3.683 28 O -0.474 6.474 29 H 0.058 0.942 30 H 0.010 0.990 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.253 0.747 39 H 0.137 0.863 40 H 0.170 0.830 41 H 0.124 0.876 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.129 0.871 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.122 0.878 48 H 0.057 0.943 49 H 0.111 0.889 50 H 0.048 0.952 51 H 0.149 0.851 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.590 -22.967 13.235 27.315 hybrid contribution 0.223 1.990 -0.334 2.030 sum 6.814 -20.977 12.901 25.552 Atomic orbital electron populations 1.70118 1.06165 1.25500 1.57342 1.25641 0.96506 1.00848 1.02033 0.85305 0.77424 0.79455 0.78096 1.19899 1.21543 1.21206 1.19218 0.90578 0.83831 1.43584 0.91076 1.44744 1.06972 1.02113 1.79795 1.21273 0.83960 0.93647 0.96254 1.22875 0.99782 0.95154 0.99370 1.22579 0.94867 0.97262 0.99939 1.21362 0.96165 0.86818 0.91712 0.93427 1.21585 0.94811 0.84316 0.98508 1.45804 1.59014 1.19482 1.11591 1.21881 0.78125 0.90274 0.82348 1.90612 1.58481 1.51387 1.44921 1.21819 1.02729 0.94913 0.87456 1.46747 1.14847 1.60170 1.08948 1.21460 0.88215 0.98811 0.91897 1.22148 1.03994 0.97849 0.92976 1.21309 1.01946 0.93811 0.98505 1.22045 0.95368 0.98696 1.04608 1.21516 0.95952 0.95407 1.01586 1.22540 1.01670 1.01427 0.92545 1.20553 0.80519 0.74684 0.92582 1.90694 1.57974 1.53943 1.44805 0.94224 0.99043 0.94689 0.89735 0.91167 0.87459 0.91437 0.94405 0.96072 0.74697 0.86277 0.82957 0.87560 0.92424 0.89385 0.87068 0.92396 0.90585 0.87798 0.94334 0.88898 0.95240 0.85072 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.70 10.58 21.65 0.23 -57.47 16 2 C -0.06 -3.29 5.47 84.86 0.46 -2.83 16 3 Si 0.97 47.62 29.55 68.60 2.03 49.65 16 4 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 7 C -0.24 -13.95 9.72 84.03 0.82 -13.13 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.61 -31.26 3.13 -668.25 -2.09 -33.35 16 10 C 0.17 8.48 5.41 86.85 0.47 8.95 16 11 C -0.13 -4.53 7.08 31.99 0.23 -4.31 16 12 C -0.11 -3.19 6.20 31.78 0.20 -2.99 16 13 C 0.15 5.67 3.19 45.34 0.14 5.81 16 14 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 15 C 0.13 5.32 5.10 86.38 0.44 5.76 16 16 N -0.71 -20.06 5.36 -463.05 -2.48 -22.54 16 17 C 0.49 14.48 7.78 87.66 0.68 15.16 16 18 O -0.57 -22.35 13.71 -3.02 -0.04 -22.39 16 19 C 0.06 1.17 5.37 85.63 0.46 1.63 16 20 N -0.58 -11.54 1.65 -833.31 -1.38 -12.92 16 21 C 0.12 1.52 4.74 86.98 0.41 1.93 16 22 C -0.13 -1.24 5.60 30.60 0.17 -1.07 16 23 C -0.12 -1.72 5.18 30.03 0.16 -1.56 16 24 C -0.17 -4.07 5.63 29.97 0.17 -3.90 16 25 C -0.11 -2.35 5.52 30.67 0.17 -2.18 16 26 C -0.14 -2.70 5.63 30.34 0.17 -2.53 16 27 C 0.53 13.41 6.14 88.19 0.54 13.95 16 28 O -0.59 -20.11 15.72 -3.02 -0.05 -20.16 16 29 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 30 H -0.01 -0.46 8.06 -2.38 -0.02 -0.48 16 31 H 0.03 1.93 6.94 -2.39 -0.02 1.91 16 32 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.07 1.96 7.78 -2.39 -0.02 1.94 16 36 H 0.04 1.68 8.03 -2.39 -0.02 1.67 16 37 H 0.02 1.01 7.86 -2.39 -0.02 0.99 16 38 H 0.42 8.35 8.40 -92.71 -0.78 7.57 16 39 H 0.12 2.58 6.58 -2.39 -0.02 2.57 16 40 H 0.15 1.51 7.72 -2.39 -0.02 1.49 16 41 H 0.11 0.65 8.01 -2.39 -0.02 0.63 16 42 H 0.06 0.99 7.46 -2.39 -0.02 0.98 16 43 H 0.09 0.67 5.06 -2.39 -0.01 0.66 16 44 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.08 0.87 7.62 -2.39 -0.02 0.85 16 47 H 0.10 2.96 1.38 -2.39 0.00 2.96 16 48 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.09 1.54 7.86 -2.39 -0.02 1.52 16 50 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.13 1.55 4.47 -2.39 -0.01 1.54 16 52 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -83.07 387.41 2.06 -81.01 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.15 Total: 19.47 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 5.69 Total: 18.70 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -5.72 Total: -126.28 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.09 Total: -42.55 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -83.07 2.06 -81.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.456 kcal (2) G-P(sol) polarization free energy of solvation -83.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds