Wall clock time and date at job start Tue Mar 31 2020 20:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00174 * 2 1 4 4 H 1.48503 * 109.47080 * 270.00491 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00009 * 3 2 1 6 6 H 1.48501 * 109.47500 * 150.00171 * 3 2 1 7 7 C 1.38816 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00037 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99954 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46662 * 54.99724 * 11 10 9 13 13 C 1.52999 * 109.46979 * 294.99849 * 11 10 9 14 14 C 1.53003 * 109.46630 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47067 * 60.00488 * 14 13 11 16 16 C 1.53008 * 109.46939 * 299.99246 * 15 14 13 17 17 C 1.52999 * 109.46803 * 174.99838 * 11 10 9 18 18 H 1.08996 * 109.47469 * 299.99775 * 17 11 10 19 19 N 1.46497 * 109.47017 * 60.00429 * 17 11 10 20 20 C 1.34780 * 119.99566 * 205.00005 * 19 17 11 21 21 O 1.21280 * 120.00423 * 359.97438 * 20 19 17 22 22 C 1.50701 * 119.99795 * 180.02562 * 20 19 17 23 23 C 1.52997 * 109.47212 * 179.97438 * 22 20 19 24 24 N 1.46500 * 109.47473 * 179.97438 * 23 22 20 25 25 C 1.46759 * 124.34915 * 269.72997 * 24 23 22 26 26 C 1.54663 * 105.38247 * 162.85207 * 25 24 23 27 27 C 1.54629 * 101.68193 * 25.76408 * 26 25 24 28 28 C 1.34423 * 124.34493 * 90.02277 * 24 23 22 29 29 O 1.21276 * 124.94635 * 0.38997 * 28 24 23 30 30 H 0.96996 * 120.00065 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99387 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47388 * 59.99878 * 10 9 7 33 33 H 1.08995 * 109.46919 * 299.99624 * 10 9 7 34 34 H 1.09006 * 109.47052 * 60.00378 * 13 11 10 35 35 H 1.08996 * 109.47523 * 300.00181 * 13 11 10 36 36 H 1.09004 * 109.47348 * 300.00019 * 14 13 11 37 37 H 1.09006 * 109.46570 * 179.97438 * 14 13 11 38 38 H 1.09006 * 109.46951 * 180.02562 * 15 14 13 39 39 H 1.08988 * 109.47734 * 59.99578 * 15 14 13 40 40 H 1.09000 * 109.46875 * 300.00336 * 16 15 14 41 41 H 1.08998 * 109.47036 * 180.02562 * 16 15 14 42 42 H 0.96995 * 120.00423 * 24.99311 * 19 17 11 43 43 H 1.09002 * 109.47060 * 299.99722 * 22 20 19 44 44 H 1.09001 * 109.47380 * 59.99809 * 22 20 19 45 45 H 1.09002 * 109.47153 * 299.99998 * 23 22 20 46 46 H 1.08998 * 109.47533 * 59.99628 * 23 22 20 47 47 H 1.09005 * 110.24338 * 281.97777 * 25 24 23 48 48 H 1.08993 * 110.24659 * 43.98042 * 25 24 23 49 49 H 1.09002 * 111.19115 * 267.59212 * 26 25 24 50 50 H 1.08996 * 110.82098 * 143.77199 * 26 25 24 51 51 H 1.09005 * 110.48385 * 216.31096 * 27 26 25 52 52 H 1.08995 * 110.60048 * 93.72728 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8198 0.0001 12 1 0.3793 -4.7130 -0.8415 13 6 0.2696 -4.8110 1.3078 14 6 -0.7251 -5.9735 1.3081 15 6 0.0352 -7.2952 1.1821 16 6 0.8294 -7.3041 -0.1257 17 6 1.8246 -6.1412 -0.1257 18 1 2.3904 -6.1475 -1.0572 19 7 2.7445 -6.2846 1.0055 20 6 3.8438 -7.0552 0.8864 21 8 4.0714 -7.6302 -0.1569 22 6 4.7898 -7.2032 2.0502 23 6 5.9455 -8.1243 1.6541 24 7 6.8655 -8.2677 2.7851 25 6 8.0187 -7.3938 3.0305 26 6 8.4061 -7.6312 4.5089 27 6 7.8732 -9.0632 4.7461 28 6 6.7650 -9.2202 3.7284 29 8 5.9101 -10.0798 3.7592 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.6848 -3.7146 0.8894 33 1 2.6847 -3.7146 -0.8905 34 1 -0.2725 -3.8695 1.3973 35 1 0.9540 -4.9176 2.1493 36 1 -1.4096 -5.8664 0.4665 37 1 -1.2906 -5.9675 2.2399 38 1 -0.6735 -8.1235 1.1818 39 1 0.7195 -7.4024 2.0235 40 1 0.1450 -7.1969 -0.9671 41 1 1.3707 -8.2458 -0.2156 42 1 2.5624 -5.8250 1.8400 43 1 5.1828 -6.2245 2.3257 44 1 4.2576 -7.6331 2.8987 45 1 5.5522 -9.1029 1.3788 46 1 6.4779 -7.6949 0.8054 47 1 8.8445 -7.6656 2.3730 48 1 7.7411 -6.3510 2.8773 49 1 7.9102 -6.9166 5.1658 50 1 9.4878 -7.5913 4.6371 51 1 7.4788 -9.1608 5.7576 52 1 8.6585 -9.7986 4.5714 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669980721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:01 Heat of formation + Delta-G solvation = -81.971707 kcal Electronic energy + Delta-G solvation = -29962.255213 eV Core-core repulsion = 25960.768535 eV Total energy + Delta-G solvation = -4001.486678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.75400 -40.19331 -38.24090 -36.68859 -34.67171 -34.04893 -33.61277 -31.93282 -30.68257 -29.70471 -29.14123 -27.91166 -25.35592 -24.54735 -22.99866 -22.31734 -22.14426 -20.99919 -20.42651 -19.60458 -18.92021 -17.70975 -17.15007 -16.92509 -16.38452 -16.04342 -15.56744 -15.41509 -14.95688 -14.66541 -14.29267 -14.28019 -14.08724 -13.72456 -13.66053 -13.48423 -13.28504 -13.14897 -13.04644 -12.91808 -12.64044 -12.38961 -12.07210 -11.93781 -11.90203 -11.65852 -11.45869 -11.41416 -11.32761 -10.91467 -10.89573 -10.72720 -10.35573 -10.21216 -10.08897 -9.98994 -9.86897 -9.83855 -9.63215 -9.05675 -8.93014 -8.83344 -6.93650 -5.78933 -3.07232 2.28040 2.60496 2.67329 3.35576 3.41312 3.46410 3.47988 3.98111 4.06779 4.39984 4.55174 4.61866 4.64402 4.77023 4.80337 4.90367 4.91394 4.96118 5.09030 5.11554 5.26056 5.27408 5.30981 5.34856 5.36614 5.50321 5.54717 5.55821 5.62423 5.64779 5.69191 5.72430 5.76730 5.84513 6.07105 6.14920 6.17180 6.20801 6.23905 6.28962 6.38897 6.48910 6.60589 6.67444 6.79694 6.81157 6.86839 7.57392 7.67539 7.87383 8.26860 8.40246 9.51417 10.09499 10.44187 11.43969 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010074 B = 0.002733 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.858807 B =10241.050073 C =12243.326468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.085 0.915 13 C -0.110 4.110 14 C -0.121 4.121 15 C -0.116 4.116 16 C -0.128 4.128 17 C 0.155 3.845 18 H 0.087 0.913 19 N -0.713 5.713 20 C 0.519 3.481 21 O -0.547 6.547 22 C -0.160 4.160 23 C 0.143 3.857 24 N -0.620 5.620 25 C 0.098 3.902 26 C -0.132 4.132 27 C -0.156 4.156 28 C 0.514 3.486 29 O -0.531 6.531 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.401 0.599 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.090 0.910 51 H 0.101 0.899 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.536 -17.665 8.812 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.103 0.897 13 C -0.147 4.147 14 C -0.158 4.158 15 C -0.153 4.153 16 C -0.167 4.167 17 C 0.050 3.950 18 H 0.105 0.895 19 N -0.365 5.365 20 C 0.305 3.695 21 O -0.425 6.425 22 C -0.201 4.201 23 C 0.021 3.979 24 N -0.354 5.354 25 C -0.025 4.025 26 C -0.170 4.170 27 C -0.196 4.196 28 C 0.302 3.698 29 O -0.408 6.408 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.237 0.763 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.100 0.900 49 H 0.102 0.898 50 H 0.109 0.891 51 H 0.120 0.880 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.328 -18.391 8.013 23.546 hybrid contribution 0.057 1.385 0.391 1.441 sum 12.386 -17.006 8.405 22.655 Atomic orbital electron populations 1.69652 1.05083 1.25641 1.57841 1.24729 0.95517 0.97653 1.03087 0.86201 0.78617 0.83896 0.77534 1.21738 1.21785 1.20821 1.19211 0.90970 0.84215 1.42573 0.91342 1.42373 1.05837 0.99902 1.89433 1.20629 0.92987 0.85341 0.97710 1.21628 0.97828 0.93424 0.99213 0.89681 1.21526 0.97655 0.98968 0.96595 1.21588 0.98059 0.94528 1.01655 1.21490 0.98633 0.97485 0.97713 1.21910 0.97922 0.98590 0.98254 1.20964 0.89757 0.94474 0.89811 0.89455 1.46127 1.23931 1.49347 1.17124 1.20345 0.81547 0.78622 0.89035 1.90696 1.74808 1.46967 1.30011 1.22030 0.97146 1.02624 0.98284 1.21078 0.88917 1.01072 0.86859 1.48367 1.28695 1.31620 1.26766 1.22185 0.88241 0.95357 0.96706 1.22638 1.02548 0.96168 0.95650 1.22343 0.98369 0.98735 1.00179 1.20982 0.85640 0.80514 0.82703 1.90744 1.38500 1.35736 1.75790 0.93520 0.78204 0.96520 0.96508 0.90299 0.92750 0.91902 0.92292 0.92496 0.92335 0.91064 0.91763 0.76316 0.88549 0.88675 0.89118 0.89304 0.90787 0.89982 0.89755 0.89092 0.88043 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.94 5.33 -59.91 -0.32 -18.26 16 10 C 0.16 3.12 5.42 -4.04 -0.02 3.10 16 11 C -0.10 -1.55 2.02 -90.62 -0.18 -1.74 16 12 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.11 -1.57 4.90 -26.73 -0.13 -1.70 16 14 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 15 C -0.12 -1.31 5.77 -26.73 -0.15 -1.46 16 16 C -0.13 -1.58 5.61 -26.70 -0.15 -1.73 16 17 C 0.15 2.11 2.23 -67.90 -0.15 1.96 16 18 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 19 N -0.71 -8.81 3.62 -53.78 -0.19 -9.00 16 20 C 0.52 6.67 7.79 -10.98 -0.09 6.58 16 21 O -0.55 -8.79 15.64 5.56 0.09 -8.70 16 22 C -0.16 -1.58 6.02 -27.88 -0.17 -1.75 16 23 C 0.14 1.45 5.22 -4.04 -0.02 1.43 16 24 N -0.62 -5.44 2.93 -172.30 -0.51 -5.95 16 25 C 0.10 0.53 7.36 -3.03 -0.02 0.50 16 26 C -0.13 -0.51 7.19 -25.00 -0.18 -0.69 16 27 C -0.16 -0.92 6.86 -26.74 -0.18 -1.10 16 28 C 0.51 5.33 8.02 -10.86 -0.09 5.24 16 29 O -0.53 -7.91 17.59 5.56 0.10 -7.81 16 30 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.38 9.87 6.85 -40.82 -0.28 9.59 16 32 H 0.02 0.32 7.61 -51.93 -0.40 -0.07 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 1.34 7.18 -51.93 -0.37 0.97 16 35 H 0.05 0.73 6.51 -51.93 -0.34 0.39 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.66 7.60 -51.94 -0.39 0.26 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.40 4.50 6.67 -40.82 -0.27 4.23 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.09 1.12 7.88 -51.93 -0.41 0.71 16 46 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 50 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 51 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 409.11 15.07 6.17 6.17 Total: -1.00 -34.40 409.11 -10.07 -44.48 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -9.16 Total: 9.23 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.94 Total: -0.19 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.29 Total: -60.33 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.18 Total: -16.51 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.40 -10.07 -44.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669980721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.494 kcal (2) G-P(sol) polarization free energy of solvation -34.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds