Wall clock time and date at job start Tue Mar 31 2020 20:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99796 * 2 1 4 4 C 1.53000 * 109.46930 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47048 * 174.99873 * 4 3 2 6 6 C 1.53000 * 109.46922 * 55.00081 * 4 3 2 7 7 N 1.46499 * 109.47359 * 294.99884 * 4 3 2 8 8 C 1.46506 * 119.99537 * 59.99712 * 7 4 3 9 9 C 1.34777 * 120.00199 * 240.00361 * 7 4 3 10 10 O 1.21283 * 119.99750 * 359.97438 * 9 7 4 11 11 C 1.50702 * 119.99928 * 180.27479 * 9 7 4 12 12 C 1.52996 * 109.47159 * 179.72352 * 11 9 7 13 13 C 1.50697 * 109.47491 * 179.97438 * 12 11 9 14 14 C 1.39869 * 126.03919 * 90.01645 * 13 12 11 15 15 C 1.50692 * 125.90076 * 359.96395 * 14 13 12 16 16 N 1.30841 * 108.19752 * 179.97438 * 14 13 12 17 17 N 1.40080 * 108.20885 * 0.02562 * 16 14 13 18 18 C 1.46498 * 126.03779 * 180.02562 * 17 16 14 19 19 C 1.50704 * 109.47186 * 90.02525 * 18 17 16 20 20 H 1.08002 * 119.99724 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00148 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99966 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00019 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47018 * 60.00137 * 23 21 19 25 25 H 1.48495 * 109.47231 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47078 * 300.00220 * 23 21 19 27 27 C 1.34951 * 107.92655 * 359.76050 * 17 16 14 28 28 C 1.50691 * 126.12920 * 180.23912 * 27 17 16 29 29 H 1.09005 * 109.46782 * 300.00141 * 1 2 3 30 30 H 1.09004 * 109.47374 * 59.99757 * 1 2 3 31 31 H 1.08996 * 109.47322 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47578 * 60.00042 * 3 2 1 33 33 H 1.09002 * 109.47356 * 300.00057 * 3 2 1 34 34 H 1.08995 * 109.47131 * 299.99850 * 6 4 3 35 35 H 1.08998 * 109.47544 * 60.00297 * 6 4 3 36 36 H 1.09007 * 109.46721 * 180.02562 * 6 4 3 37 37 H 1.08998 * 109.46921 * 269.99744 * 8 7 4 38 38 H 1.08994 * 109.46996 * 30.00327 * 8 7 4 39 39 H 1.09001 * 109.46578 * 150.00190 * 8 7 4 40 40 H 1.09004 * 109.46965 * 299.72211 * 11 9 7 41 41 H 1.08994 * 109.46990 * 59.72065 * 11 9 7 42 42 H 1.09004 * 109.47066 * 299.99797 * 12 11 9 43 43 H 1.09000 * 109.47234 * 59.99288 * 12 11 9 44 44 H 1.09008 * 109.46859 * 89.99698 * 15 14 13 45 45 H 1.08996 * 109.47281 * 209.99516 * 15 14 13 46 46 H 1.08993 * 109.47447 * 329.99809 * 15 14 13 47 47 H 1.08998 * 109.47342 * 210.02575 * 18 17 16 48 48 H 1.08995 * 109.47362 * 330.02800 * 18 17 16 49 49 H 0.96998 * 119.99767 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.47196 * 270.17568 * 28 27 17 51 51 H 1.09005 * 109.47565 * 30.17689 * 28 27 17 52 52 H 1.09005 * 109.47499 * 150.17275 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9784 2.1766 -0.0902 6 6 3.9780 0.3198 -1.1826 7 7 3.9767 0.5640 1.2509 8 6 3.5152 -0.7809 1.6040 9 6 4.8071 1.2302 2.0774 10 8 5.1893 2.3434 1.7848 11 6 5.2659 0.5892 3.3618 12 6 6.1993 1.5472 4.1048 13 6 6.6576 0.9065 5.3895 14 6 7.7961 0.1103 5.5515 15 6 8.7786 -0.2573 4.4696 16 7 7.8604 -0.2605 6.8046 17 7 6.7630 0.2884 7.4804 18 6 6.4547 0.1205 8.9027 19 6 7.1142 1.2212 9.6930 20 1 7.7036 1.9711 9.1864 21 6 6.9650 1.2709 11.0628 22 7 6.2477 0.3575 11.6797 23 14 7.7818 2.6358 12.0423 24 1 7.2726 3.9512 11.5780 25 1 7.4694 2.4655 13.4840 26 1 9.2522 2.5760 11.8435 27 6 6.0432 1.0041 6.5911 28 6 4.7799 1.7719 6.8834 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.5350 -0.6720 -1.0931 35 1 3.6497 0.7816 -2.1138 36 1 5.0646 0.2334 -1.1828 37 1 2.5915 -0.7089 2.1780 38 1 3.3341 -1.3534 0.6943 39 1 4.2769 -1.2808 2.2024 40 1 4.4006 0.3675 3.9865 41 1 5.7980 -0.3350 3.1367 42 1 7.0645 1.7689 3.4800 43 1 5.6672 2.4715 4.3297 44 1 9.5699 0.4913 4.4278 45 1 9.2126 -1.2327 4.6891 46 1 8.2642 -0.2962 3.5095 47 1 5.3755 0.1651 9.0483 48 1 6.8277 -0.8452 9.2438 49 1 6.1425 0.3927 12.6434 50 1 3.9174 1.1217 6.7370 51 1 4.7988 2.1236 7.9149 52 1 4.7096 2.6259 6.2096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193625421.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:51 Heat of formation + Delta-G solvation = -26.953864 kcal Electronic energy + Delta-G solvation = -29732.265322 eV Core-core repulsion = 25733.164397 eV Total energy + Delta-G solvation = -3999.100925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.63410 -40.12906 -38.31918 -35.92188 -34.39786 -33.44902 -32.46107 -32.13833 -30.06360 -28.93415 -27.73598 -27.11220 -26.75089 -25.86418 -25.78918 -23.99334 -22.33672 -21.20113 -19.10549 -18.77082 -18.61854 -17.45706 -16.71399 -16.54765 -16.44442 -16.16091 -15.55138 -15.35004 -15.16403 -14.48087 -14.29403 -13.99144 -13.72884 -13.45450 -13.15781 -13.07266 -12.87892 -12.80633 -12.65969 -12.55314 -12.48122 -12.30102 -12.20984 -12.08239 -11.92583 -11.80106 -11.58021 -11.45286 -11.33406 -11.27510 -11.17418 -10.95043 -10.78193 -10.67989 -10.24866 -10.09390 -9.78089 -9.71348 -9.55642 -8.80141 -8.63953 -8.15265 -7.44620 -6.25737 -4.33257 2.62094 2.75057 2.87215 3.23556 3.27216 3.31505 3.39862 3.42942 3.64529 4.30142 4.39682 4.67261 4.73147 4.88492 4.97236 4.99392 5.06991 5.08117 5.10214 5.19073 5.24850 5.28423 5.32010 5.37261 5.40791 5.43488 5.47068 5.64561 5.71421 5.72616 5.82335 5.89947 5.95711 5.99281 6.00154 6.03670 6.08397 6.27314 6.36383 6.41938 6.52640 6.57389 6.71588 6.91428 7.03589 7.13591 7.28642 7.54410 7.67034 7.89367 8.08229 8.15085 8.68670 8.77107 9.33224 10.81700 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017866 B = 0.002249 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.824094 B =12445.073325 C =13093.260530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.052 3.948 4 C 0.138 3.862 5 H 0.112 0.888 6 C -0.157 4.157 7 N -0.613 5.613 8 C 0.087 3.913 9 C 0.514 3.486 10 O -0.544 6.544 11 C -0.130 4.130 12 C -0.011 4.011 13 C -0.268 4.268 14 C 0.050 3.950 15 C -0.064 4.064 16 N -0.297 5.297 17 N -0.326 5.326 18 C 0.258 3.742 19 C -0.536 4.536 20 H 0.063 0.937 21 C 0.066 3.934 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.094 3.906 28 C -0.091 4.091 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.051 0.949 48 H 0.051 0.949 49 H 0.268 0.732 50 H 0.068 0.932 51 H 0.081 0.919 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.912 -1.610 -24.705 27.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.026 4.026 4 C 0.034 3.966 5 H 0.130 0.870 6 C -0.215 4.215 7 N -0.347 5.347 8 C -0.056 4.056 9 C 0.304 3.696 10 O -0.421 6.421 11 C -0.170 4.170 12 C -0.050 4.050 13 C -0.280 4.280 14 C -0.114 4.114 15 C -0.122 4.122 16 N -0.121 5.121 17 N -0.105 5.105 18 C 0.140 3.860 19 C -0.575 4.575 20 H 0.081 0.919 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 C -0.038 4.038 28 C -0.149 4.149 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.078 0.922 50 H 0.087 0.913 51 H 0.100 0.900 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.036 -1.962 -23.600 25.720 hybrid contribution -0.430 1.238 0.224 1.330 sum -10.466 -0.724 -23.376 25.623 Atomic orbital electron populations 1.22731 0.81171 1.02735 0.99926 1.87898 1.19513 1.27523 1.95390 1.22943 0.93761 0.85151 1.00716 1.21130 0.91749 0.99276 0.84411 0.87003 1.22038 1.01601 1.01029 0.96845 1.47951 1.48209 1.17790 1.20788 1.21751 0.99548 0.82651 1.01658 1.21120 0.77396 0.85673 0.85437 1.90668 1.56343 1.19769 1.75317 1.21758 1.01460 1.00734 0.93046 1.19406 0.97793 0.96003 0.91775 1.19360 1.00963 1.12652 0.94987 1.21942 0.96781 0.99275 0.93406 1.20013 0.96386 1.01498 0.94340 1.77262 1.07279 1.22367 1.05184 1.49244 1.16383 1.34967 1.09951 1.19634 0.97296 0.99267 0.69822 1.21284 1.32852 1.11410 0.91943 0.91856 1.24928 0.95027 0.96492 0.97328 1.69910 1.39020 1.34031 1.10030 0.86416 0.80036 0.81720 0.78535 1.19937 1.20948 1.19939 1.20758 0.96250 0.96942 0.89810 1.20396 0.92133 0.98622 1.03774 0.94110 0.94231 0.89613 0.92850 0.92361 0.91279 0.91737 0.92258 0.92584 0.90504 0.91312 0.89122 0.89033 0.91356 0.91475 0.91413 0.91654 0.91467 0.93131 0.93082 0.92212 0.91318 0.90007 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -2.93 7.55 -35.23 -0.27 -3.20 16 3 C 0.05 0.39 5.69 37.16 0.21 0.60 16 4 C 0.14 1.22 3.17 -67.93 -0.22 1.00 16 5 H 0.11 1.14 6.90 -51.93 -0.36 0.78 16 6 C -0.16 -1.16 8.97 37.16 0.33 -0.82 16 7 N -0.61 -6.13 2.76 -173.93 -0.48 -6.61 16 8 C 0.09 0.70 8.53 59.85 0.51 1.21 16 9 C 0.51 6.44 7.67 -10.98 -0.08 6.36 16 10 O -0.54 -8.55 15.31 5.55 0.09 -8.47 16 11 C -0.13 -1.57 4.23 -27.88 -0.12 -1.69 16 12 C -0.01 -0.16 4.45 -27.89 -0.12 -0.28 16 13 C -0.27 -4.85 5.35 -105.05 -0.56 -5.41 16 14 C 0.05 0.97 7.22 -82.41 -0.59 0.37 16 15 C -0.06 -0.92 10.12 36.00 0.36 -0.56 16 16 N -0.30 -6.89 12.58 33.67 0.42 -6.47 16 17 N -0.33 -7.67 3.60 -58.32 -0.21 -7.88 16 18 C 0.26 6.65 5.81 -5.19 -0.03 6.62 16 19 C -0.54 -14.91 9.39 -34.44 -0.32 -15.24 16 20 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 21 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 22 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 23 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.09 1.88 6.93 -82.27 -0.57 1.31 16 28 C -0.09 -1.52 9.68 36.00 0.35 -1.17 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.51 6.08 -51.93 -0.32 0.20 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.06 0.45 7.97 -51.93 -0.41 0.04 16 38 H 0.08 0.57 5.87 -51.93 -0.30 0.26 16 39 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 40 H 0.09 1.05 8.11 -51.93 -0.42 0.62 16 41 H 0.09 1.01 7.40 -51.93 -0.38 0.63 16 42 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 43 H 0.07 1.03 7.09 -51.93 -0.37 0.66 16 44 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 47 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 48 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 49 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.08 1.51 7.74 -51.93 -0.40 1.10 16 52 H 0.07 1.09 7.14 -51.93 -0.37 0.71 16 LS Contribution 419.52 15.07 6.32 6.32 Total: -1.00 -32.64 419.52 -7.34 -39.97 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -9.09 Total: -0.79 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 0.16 Total: -4.71 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.47 Total: -45.43 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.18 Total: -11.66 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.64 -7.34 -39.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193625421.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.019 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds