Wall clock time and date at job start Tue Mar 31 2020 20:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.45855 * 2 1 4 4 C 1.34773 * 119.99814 * 59.99857 * 3 2 1 5 5 O 1.21279 * 120.00551 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99484 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.17838 * 55.70144 * 6 4 3 8 8 C 1.53775 * 109.14907 * 296.41810 * 6 4 3 9 9 N 1.45479 * 107.45276 * 185.63140 * 8 6 4 10 10 C 1.46106 * 118.12676 * 182.78503 * 9 8 6 11 11 C 1.54905 * 105.80449 * 207.55529 * 10 9 8 12 12 C 1.55425 * 104.96719 * 4.06018 * 11 10 9 13 13 C 1.48875 * 109.16059 * 62.54238 * 9 8 6 14 14 H 1.08991 * 111.15373 * 53.53320 * 13 9 8 15 15 C 1.52326 * 106.88538 * 292.32515 * 13 9 8 16 16 O 1.42655 * 109.17968 * 174.99677 * 6 4 3 17 17 C 1.53045 * 109.45858 * 119.96886 * 2 1 3 18 18 C 1.53163 * 109.32634 * 181.38637 * 17 2 1 19 19 N 1.46931 * 108.77110 * 305.36037 * 18 17 2 20 20 C 1.36940 * 120.62624 * 233.59066 * 19 18 17 21 21 H 1.08005 * 119.99482 * 152.30644 * 20 19 18 22 22 C 1.38806 * 120.00332 * 332.29927 * 20 19 18 23 23 N 1.31624 * 120.00054 * 342.60788 * 22 20 19 24 24 Si 1.86796 * 120.00251 * 162.60610 * 22 20 19 25 25 H 1.48497 * 109.47647 * 94.34937 * 24 22 20 26 26 H 1.48506 * 109.47405 * 214.35198 * 24 22 20 27 27 H 1.48500 * 109.47087 * 334.34684 * 24 22 20 28 28 C 1.46924 * 118.73860 * 53.60388 * 19 18 17 29 29 C 1.53041 * 109.46441 * 240.02587 * 2 1 3 30 30 H 1.08992 * 109.46949 * 60.00437 * 1 2 3 31 31 H 1.09004 * 109.46993 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47234 * 300.00007 * 1 2 3 33 33 H 0.97001 * 119.99310 * 239.99424 * 3 2 1 34 34 H 1.09002 * 109.86586 * 305.11988 * 8 6 4 35 35 H 1.09003 * 109.86115 * 66.07325 * 8 6 4 36 36 H 1.09007 * 110.18284 * 326.63948 * 10 9 8 37 37 H 1.08996 * 110.18417 * 88.47014 * 10 9 8 38 38 H 1.09009 * 110.34373 * 122.93205 * 11 10 9 39 39 H 1.08994 * 110.34526 * 245.18412 * 11 10 9 40 40 H 1.08999 * 110.93724 * 140.47406 * 12 11 10 41 41 H 1.09000 * 110.93245 * 264.14598 * 12 11 10 42 42 H 1.08997 * 109.91271 * 301.83107 * 15 13 9 43 43 H 1.08999 * 109.91086 * 180.66986 * 15 13 9 44 44 H 1.08993 * 109.50017 * 301.32830 * 17 2 1 45 45 H 1.09002 * 109.49344 * 61.42545 * 17 2 1 46 46 H 1.09004 * 109.58956 * 185.57198 * 18 17 2 47 47 H 1.09005 * 109.59184 * 65.14174 * 18 17 2 48 48 H 0.96994 * 119.99983 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.58582 * 186.60670 * 28 19 18 50 50 H 1.08996 * 109.58462 * 66.18831 * 28 19 18 51 51 H 1.09003 * 109.49293 * 298.57925 * 29 2 1 52 52 H 1.08997 * 109.49252 * 58.64165 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6922 2.2111 1.0108 5 8 0.9954 1.8142 1.9207 6 6 2.1948 3.6319 1.0110 7 1 1.8935 4.1184 0.0833 8 6 3.7298 3.6240 1.1022 9 7 4.1661 5.0054 1.2358 10 6 5.6017 5.2731 1.2795 11 6 5.7625 6.5802 2.0951 12 6 4.3264 6.9346 2.5725 13 6 3.6210 5.5698 2.5009 14 1 3.8765 4.9415 3.3541 15 6 2.1106 5.6657 2.3280 16 8 1.6221 4.3314 2.1145 17 6 2.0398 -0.7208 1.2501 18 6 3.5710 -0.6889 1.2646 19 7 4.0677 -1.2492 0.0004 20 6 4.9760 -2.2740 0.0007 21 1 5.0089 -2.9666 -0.8274 22 6 5.8545 -2.4226 1.0651 23 7 6.0611 -1.4202 1.8928 24 14 6.7435 -4.0450 1.3230 25 1 8.0774 -3.9875 0.6729 26 1 6.9120 -4.2914 2.7777 27 1 5.9477 -5.1462 0.7235 28 6 3.5714 -0.6890 -1.2639 29 6 2.0399 -0.7209 -1.2500 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.5757 1.6986 -0.7275 34 1 4.0461 3.0499 1.9731 35 1 4.1523 3.1869 0.1974 36 1 6.1221 4.4538 1.7757 37 1 5.9898 5.4094 0.2702 38 1 6.4164 6.4146 2.9514 39 1 6.1586 7.3749 1.4631 40 1 4.3382 7.3138 3.5943 41 1 3.8576 7.6511 1.8981 42 1 1.8745 6.2897 1.4662 43 1 1.6600 6.0866 3.2269 44 1 1.6573 -0.2208 2.1398 45 1 1.6976 -1.7557 1.2383 46 1 3.9411 -1.2848 2.0989 47 1 3.9142 0.3406 1.3677 48 1 6.6752 -1.5239 2.6363 49 1 3.9417 -1.2850 -2.0980 50 1 3.9146 0.3404 -1.3670 51 1 1.6977 -1.7557 -1.2381 52 1 1.6570 -0.2212 -2.1397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045444321.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:13 Heat of formation + Delta-G solvation = -41.972389 kcal Electronic energy + Delta-G solvation = -32031.170665 eV Core-core repulsion = 28031.418488 eV Total energy + Delta-G solvation = -3999.752177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.66985 -39.65749 -37.53619 -36.49573 -34.37147 -33.23958 -31.85374 -30.92618 -30.37166 -29.89120 -28.57204 -27.41631 -24.75795 -24.17632 -23.85657 -22.27270 -21.33724 -21.02083 -20.48072 -20.13913 -18.64298 -17.39769 -16.80939 -16.41599 -16.28367 -15.55319 -15.20801 -14.87158 -14.80799 -14.57944 -14.24911 -13.91910 -13.82448 -13.60830 -13.41704 -13.24173 -13.08539 -13.00018 -12.71432 -12.31426 -12.12474 -11.83603 -11.60158 -11.52532 -11.39979 -11.38329 -11.30932 -11.08318 -10.93639 -10.83671 -10.71760 -10.66738 -10.37866 -10.23862 -9.95477 -9.75789 -9.66326 -9.54991 -8.98383 -8.56099 -8.51123 -8.45466 -6.66848 -5.79193 -3.21260 2.89679 3.03313 3.36302 3.44203 3.46379 3.68483 4.10563 4.35417 4.49135 4.53865 4.63199 4.86487 4.95059 5.02728 5.08204 5.10574 5.28954 5.34888 5.36122 5.40126 5.45756 5.45995 5.54740 5.55593 5.61243 5.62026 5.69945 5.73698 5.81276 5.96252 5.97079 5.99244 6.04023 6.14472 6.21018 6.38591 6.47248 6.55275 6.66023 6.66633 6.74650 6.82041 6.92710 6.99413 7.06488 7.14379 7.41882 7.70255 7.79455 7.91724 8.44569 8.60443 9.21093 9.84895 10.41216 11.28761 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.003982 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.635537 B = 7029.363225 C = 8698.918606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.186 3.814 3 N -0.707 5.707 4 C 0.523 3.477 5 O -0.517 6.517 6 C 0.086 3.914 7 H 0.084 0.916 8 C 0.038 3.962 9 N -0.539 5.539 10 C 0.050 3.950 11 C -0.126 4.126 12 C -0.110 4.110 13 C 0.023 3.977 14 H 0.067 0.933 15 C 0.080 3.920 16 O -0.361 6.361 17 C -0.152 4.152 18 C 0.179 3.821 19 N -0.590 5.590 20 C -0.253 4.253 21 H 0.065 0.935 22 C 0.004 3.996 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.146 3.854 29 C -0.137 4.137 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.396 0.604 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.015 0.985 48 H 0.252 0.748 49 H 0.055 0.945 50 H 0.013 0.987 51 H 0.075 0.925 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.849 16.152 -3.042 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.101 3.899 3 N -0.360 5.360 4 C 0.307 3.693 5 O -0.392 6.392 6 C 0.024 3.976 7 H 0.101 0.899 8 C -0.091 4.091 9 N -0.265 5.265 10 C -0.077 4.077 11 C -0.164 4.164 12 C -0.148 4.148 13 C -0.085 4.085 14 H 0.085 0.915 15 C 0.003 3.997 16 O -0.278 6.278 17 C -0.192 4.192 18 C 0.054 3.946 19 N -0.313 5.313 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.546 5.546 24 Si 0.729 3.271 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.204 1.204 28 C 0.019 3.981 29 C -0.177 4.177 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.231 0.769 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.118 0.882 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.033 0.967 48 H 0.062 0.938 49 H 0.074 0.926 50 H 0.031 0.969 51 H 0.093 0.907 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.548 15.955 -2.567 17.437 hybrid contribution 1.506 -1.030 0.270 1.844 sum -5.042 14.926 -2.297 15.921 Atomic orbital electron populations 1.22231 0.95388 1.01891 1.02383 1.20278 0.92607 0.79806 0.97199 1.46001 1.53267 1.12098 1.24676 1.19895 0.80825 0.86136 0.82435 1.90642 1.37118 1.76276 1.35137 1.21945 0.92491 0.91751 0.91405 0.89852 1.22495 0.93957 0.89180 1.03436 1.62732 1.11634 1.17455 1.34682 1.22496 0.87544 0.96890 1.00780 1.22654 0.96991 0.97155 0.99649 1.22274 0.95255 0.95837 1.01470 1.23353 0.96238 0.96721 0.92230 0.91493 1.22627 0.91554 0.83857 1.01686 1.87968 1.63598 1.27110 1.49150 1.22582 1.00777 0.99134 0.96680 1.20668 0.87262 0.96789 0.89924 1.44070 1.48236 1.39623 0.99401 1.19170 1.09858 1.03014 1.06231 0.91772 1.25007 0.97258 0.97357 0.99882 1.70040 1.37547 1.29056 1.17912 0.86328 0.79548 0.83970 0.77207 1.21530 1.21594 1.20418 1.20855 0.90488 0.96121 0.90603 1.22334 0.99623 1.00548 0.95149 0.93452 0.92228 0.90766 0.76902 0.92704 0.88872 0.93626 0.90114 0.91302 0.90845 0.90834 0.90415 0.91906 0.88187 0.91071 0.92182 0.89854 0.96722 0.93754 0.92635 0.96948 0.90653 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.40 37.16 0.31 -2.17 16 2 C 0.19 3.16 0.66 -131.77 -0.09 3.07 16 3 N -0.71 -11.12 4.03 -47.56 -0.19 -11.31 16 4 C 0.52 8.90 6.60 -10.99 -0.07 8.83 16 5 O -0.52 -10.60 12.71 -14.48 -0.18 -10.78 16 6 C 0.09 1.24 3.27 -27.48 -0.09 1.15 16 7 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 8 C 0.04 0.54 5.29 -4.19 -0.02 0.52 16 9 N -0.54 -6.63 4.65 -225.05 -1.05 -7.68 16 10 C 0.05 0.56 6.89 -3.25 -0.02 0.54 16 11 C -0.13 -1.11 6.99 -24.44 -0.17 -1.28 16 12 C -0.11 -0.93 6.63 -25.02 -0.17 -1.10 16 13 C 0.02 0.26 2.79 -66.54 -0.19 0.07 16 14 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 15 C 0.08 0.90 6.67 36.81 0.25 1.14 16 16 O -0.36 -5.55 9.88 -55.27 -0.55 -6.09 16 17 C -0.15 -3.12 4.66 -26.62 -0.12 -3.24 16 18 C 0.18 4.32 5.05 -3.72 -0.02 4.30 16 19 N -0.59 -14.33 2.99 -172.34 -0.52 -14.84 16 20 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 21 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 22 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 23 N -0.90 -26.10 11.19 55.49 0.62 -25.48 16 24 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 C 0.15 2.84 6.24 -3.72 -0.02 2.82 16 29 C -0.14 -2.22 4.96 -26.61 -0.13 -2.35 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.29 6.17 -51.93 -0.32 0.97 16 33 H 0.40 5.49 7.10 -40.82 -0.29 5.20 16 34 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 35 H 0.09 1.29 7.98 -51.93 -0.41 0.87 16 36 H 0.05 0.58 8.07 -51.92 -0.42 0.16 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.60 8.11 -51.93 -0.42 0.18 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 1.55 6.20 -51.93 -0.32 1.23 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.08 2.32 6.04 -51.93 -0.31 2.00 16 47 H 0.01 0.37 7.74 -51.93 -0.40 -0.03 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.06 1.07 7.93 -51.93 -0.41 0.65 16 50 H 0.01 0.24 6.94 -51.93 -0.36 -0.12 16 51 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 52 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -31.81 388.33 -10.97 -42.77 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -9.14 Total: 5.58 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -0.79 Total: 5.34 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -1.13 Total: -59.31 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.73 Total: -16.88 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.81 -10.97 -42.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045444321.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.801 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds