Wall clock time and date at job start Tue Mar 31 2020 20:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.45855 * 2 1 4 4 C 1.34773 * 119.99814 * 59.99857 * 3 2 1 5 5 O 1.21279 * 120.00551 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99484 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.17838 * 55.70144 * 6 4 3 8 8 C 1.53775 * 109.14907 * 296.41810 * 6 4 3 9 9 N 1.45479 * 107.45276 * 185.63140 * 8 6 4 10 10 C 1.46106 * 118.12676 * 182.78503 * 9 8 6 11 11 C 1.54905 * 105.80449 * 207.55529 * 10 9 8 12 12 C 1.55425 * 104.96719 * 4.06018 * 11 10 9 13 13 C 1.48875 * 109.16059 * 62.54238 * 9 8 6 14 14 H 1.08991 * 111.15373 * 53.53320 * 13 9 8 15 15 C 1.52326 * 106.88538 * 292.32515 * 13 9 8 16 16 O 1.42655 * 109.17968 * 174.99677 * 6 4 3 17 17 C 1.53045 * 109.45858 * 119.96886 * 2 1 3 18 18 C 1.53163 * 109.32634 * 181.38637 * 17 2 1 19 19 N 1.46931 * 108.77110 * 305.36037 * 18 17 2 20 20 C 1.36940 * 120.62624 * 233.59066 * 19 18 17 21 21 H 1.08005 * 119.99482 * 152.30644 * 20 19 18 22 22 C 1.38806 * 120.00332 * 332.29927 * 20 19 18 23 23 N 1.31624 * 120.00054 * 342.60788 * 22 20 19 24 24 Si 1.86796 * 120.00251 * 162.60610 * 22 20 19 25 25 H 1.48497 * 109.47647 * 94.34937 * 24 22 20 26 26 H 1.48506 * 109.47405 * 214.35198 * 24 22 20 27 27 H 1.48500 * 109.47087 * 334.34684 * 24 22 20 28 28 C 1.46924 * 118.73860 * 53.60388 * 19 18 17 29 29 C 1.53041 * 109.46441 * 240.02587 * 2 1 3 30 30 H 1.08992 * 109.46949 * 60.00437 * 1 2 3 31 31 H 1.09004 * 109.46993 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47234 * 300.00007 * 1 2 3 33 33 H 0.97001 * 119.99310 * 239.99424 * 3 2 1 34 34 H 1.09002 * 109.86586 * 305.11988 * 8 6 4 35 35 H 1.09003 * 109.86115 * 66.07325 * 8 6 4 36 36 H 1.09007 * 110.18284 * 326.63948 * 10 9 8 37 37 H 1.08996 * 110.18417 * 88.47014 * 10 9 8 38 38 H 1.09009 * 110.34373 * 122.93205 * 11 10 9 39 39 H 1.08994 * 110.34526 * 245.18412 * 11 10 9 40 40 H 1.08999 * 110.93724 * 140.47406 * 12 11 10 41 41 H 1.09000 * 110.93245 * 264.14598 * 12 11 10 42 42 H 1.08997 * 109.91271 * 301.83107 * 15 13 9 43 43 H 1.08999 * 109.91086 * 180.66986 * 15 13 9 44 44 H 1.08993 * 109.50017 * 301.32830 * 17 2 1 45 45 H 1.09002 * 109.49344 * 61.42545 * 17 2 1 46 46 H 1.09004 * 109.58956 * 185.57198 * 18 17 2 47 47 H 1.09005 * 109.59184 * 65.14174 * 18 17 2 48 48 H 0.96994 * 119.99983 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.58582 * 186.60670 * 28 19 18 50 50 H 1.08996 * 109.58462 * 66.18831 * 28 19 18 51 51 H 1.09003 * 109.49293 * 298.57925 * 29 2 1 52 52 H 1.08997 * 109.49252 * 58.64165 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6922 2.2111 1.0108 5 8 0.9954 1.8142 1.9207 6 6 2.1948 3.6319 1.0110 7 1 1.8935 4.1184 0.0833 8 6 3.7298 3.6240 1.1022 9 7 4.1661 5.0054 1.2358 10 6 5.6017 5.2731 1.2795 11 6 5.7625 6.5802 2.0951 12 6 4.3264 6.9346 2.5725 13 6 3.6210 5.5698 2.5009 14 1 3.8765 4.9415 3.3541 15 6 2.1106 5.6657 2.3280 16 8 1.6221 4.3314 2.1145 17 6 2.0398 -0.7208 1.2501 18 6 3.5710 -0.6889 1.2646 19 7 4.0677 -1.2492 0.0004 20 6 4.9760 -2.2740 0.0007 21 1 5.0089 -2.9666 -0.8274 22 6 5.8545 -2.4226 1.0651 23 7 6.0611 -1.4202 1.8928 24 14 6.7435 -4.0450 1.3230 25 1 8.0774 -3.9875 0.6729 26 1 6.9120 -4.2914 2.7777 27 1 5.9477 -5.1462 0.7235 28 6 3.5714 -0.6890 -1.2639 29 6 2.0399 -0.7209 -1.2500 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.5757 1.6986 -0.7275 34 1 4.0461 3.0499 1.9731 35 1 4.1523 3.1869 0.1974 36 1 6.1221 4.4538 1.7757 37 1 5.9898 5.4094 0.2702 38 1 6.4164 6.4146 2.9514 39 1 6.1586 7.3749 1.4631 40 1 4.3382 7.3138 3.5943 41 1 3.8576 7.6511 1.8981 42 1 1.8745 6.2897 1.4662 43 1 1.6600 6.0866 3.2269 44 1 1.6573 -0.2208 2.1398 45 1 1.6976 -1.7557 1.2383 46 1 3.9411 -1.2848 2.0989 47 1 3.9142 0.3406 1.3677 48 1 6.6752 -1.5239 2.6363 49 1 3.9417 -1.2850 -2.0980 50 1 3.9146 0.3404 -1.3670 51 1 1.6977 -1.7557 -1.2381 52 1 1.6570 -0.2212 -2.1397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045444321.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:12 Heat of formation + Delta-G solvation = -63.225079 kcal Electronic energy + Delta-G solvation = -32032.092251 eV Core-core repulsion = 28031.418488 eV Total energy + Delta-G solvation = -4000.673763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.87126 -40.87930 -38.95200 -37.67438 -36.10299 -34.39924 -33.47816 -32.42404 -31.60926 -31.30463 -29.64991 -29.06380 -25.96826 -25.65097 -25.07297 -23.94703 -22.82952 -21.94210 -21.72231 -21.27818 -20.19607 -18.89880 -18.42446 -17.57732 -17.26872 -16.85420 -16.56600 -16.22932 -16.14576 -15.94038 -15.69678 -15.36912 -15.22654 -14.97826 -14.87370 -14.74006 -14.42053 -14.09451 -14.00240 -13.60326 -13.32320 -13.21744 -13.05845 -12.97704 -12.83847 -12.59305 -12.56427 -12.46295 -12.25676 -12.24300 -12.17141 -11.98253 -11.76454 -11.65965 -11.54614 -11.32109 -11.27766 -10.80338 -10.54337 -10.42054 -9.98941 -9.57319 -8.67558 -7.88415 -5.32717 1.42850 1.45804 1.54827 1.55923 1.84902 2.49506 2.65697 3.00490 3.27250 3.47597 3.55144 3.67160 3.73252 3.76267 3.90011 3.94489 4.07191 4.11082 4.13440 4.15090 4.19001 4.32942 4.48804 4.52024 4.59036 4.65163 4.67403 4.71105 4.73209 4.80184 4.85596 4.88658 4.93852 4.95242 4.97480 5.04070 5.14617 5.16342 5.20659 5.25900 5.34771 5.37409 5.49044 5.61131 5.65581 5.71127 5.75625 5.96327 6.05758 6.37025 6.62956 7.13394 7.28765 7.86517 8.37669 9.17296 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.003982 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.635537 B = 7029.363225 C = 8698.918606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.188 3.812 3 N -0.699 5.699 4 C 0.518 3.482 5 O -0.557 6.557 6 C 0.095 3.905 7 H 0.114 0.886 8 C 0.047 3.953 9 N -0.533 5.533 10 C 0.043 3.957 11 C -0.122 4.122 12 C -0.100 4.100 13 C 0.018 3.982 14 H 0.039 0.961 15 C 0.077 3.923 16 O -0.391 6.391 17 C -0.140 4.140 18 C 0.196 3.804 19 N -0.606 5.606 20 C -0.258 4.258 21 H 0.071 0.929 22 C -0.052 4.052 23 N -0.936 5.936 24 Si 0.962 3.038 25 H -0.284 1.284 26 H -0.298 1.298 27 H -0.268 1.268 28 C 0.140 3.860 29 C -0.123 4.123 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.408 0.592 34 H 0.010 0.990 35 H 0.095 0.905 36 H 0.019 0.981 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.119 0.881 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.038 0.962 47 H -0.008 1.008 48 H 0.246 0.754 49 H 0.061 0.939 50 H 0.023 0.977 51 H 0.074 0.926 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 17.735 -5.488 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.102 3.898 3 N -0.352 5.352 4 C 0.304 3.696 5 O -0.434 6.434 6 C 0.034 3.966 7 H 0.131 0.869 8 C -0.082 4.082 9 N -0.258 5.258 10 C -0.085 4.085 11 C -0.160 4.160 12 C -0.138 4.138 13 C -0.090 4.090 14 H 0.057 0.943 15 C 0.001 3.999 16 O -0.309 6.309 17 C -0.180 4.180 18 C 0.070 3.930 19 N -0.330 5.330 20 C -0.389 4.389 21 H 0.089 0.911 22 C -0.247 4.247 23 N -0.582 5.582 24 Si 0.790 3.210 25 H -0.211 1.211 26 H -0.225 1.225 27 H -0.193 1.193 28 C 0.015 3.985 29 C -0.162 4.162 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.244 0.756 34 H 0.029 0.971 35 H 0.113 0.887 36 H 0.038 0.962 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.137 0.863 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.010 0.990 48 H 0.055 0.945 49 H 0.080 0.920 50 H 0.041 0.959 51 H 0.093 0.907 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.495 17.553 -5.071 19.748 hybrid contribution 1.822 -1.500 1.036 2.577 sum -5.672 16.053 -4.036 17.497 Atomic orbital electron populations 1.22113 0.93470 1.02685 1.02604 1.20229 0.93959 0.80028 0.95564 1.45914 1.52995 1.11501 1.24786 1.20429 0.80076 0.87284 0.81853 1.90624 1.39036 1.77233 1.36546 1.21879 0.91889 0.90343 0.92520 0.86884 1.22325 0.94294 0.90079 1.01525 1.62833 1.12312 1.15563 1.35142 1.22637 0.86659 0.97539 1.01631 1.22667 0.97488 0.96134 0.99666 1.22295 0.94350 0.94124 1.03018 1.23437 0.96855 0.98008 0.90711 0.94330 1.22899 0.91231 0.82282 1.03453 1.87926 1.64250 1.29136 1.49624 1.22379 0.97865 0.99355 0.98399 1.20276 0.89441 0.94363 0.88946 1.44269 1.48101 1.39648 1.00934 1.19547 1.09489 1.03750 1.06083 0.91143 1.25752 0.98681 1.00166 1.00086 1.70207 1.38610 1.30930 1.18470 0.85345 0.78595 0.80633 0.76407 1.21072 1.22520 1.19250 1.21091 0.92736 0.96376 0.88339 1.22210 0.96738 1.01012 0.96205 0.90760 0.91183 0.92949 0.75561 0.97122 0.88663 0.96227 0.89111 0.91186 0.88696 0.89150 0.88682 0.89885 0.86309 0.92925 0.92561 0.94369 0.99011 0.94540 0.92037 0.95902 0.90694 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 8.40 71.98 0.60 -3.73 16 2 C 0.19 6.13 0.66 3.63 0.00 6.13 16 3 N -0.70 -21.37 4.03 -422.79 -1.71 -23.07 16 4 C 0.52 17.80 6.60 87.66 0.58 18.38 16 5 O -0.56 -23.57 12.71 16.13 0.21 -23.37 16 6 C 0.10 2.73 3.27 30.11 0.10 2.83 16 7 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 8 C 0.05 1.40 5.29 86.83 0.46 1.85 16 9 N -0.53 -12.91 4.65 -865.93 -4.03 -16.94 16 10 C 0.04 0.95 6.89 87.10 0.60 1.55 16 11 C -0.12 -1.91 6.99 32.08 0.22 -1.69 16 12 C -0.10 -1.45 6.63 31.70 0.21 -1.24 16 13 C 0.02 0.40 2.79 44.58 0.12 0.52 16 14 H 0.04 1.07 8.09 -2.39 -0.02 1.05 16 15 C 0.08 1.62 6.67 71.76 0.48 2.10 16 16 O -0.39 -11.97 9.88 -129.82 -1.28 -13.26 16 17 C -0.14 -5.92 4.66 30.66 0.14 -5.77 16 18 C 0.20 9.89 5.05 86.35 0.44 10.33 16 19 N -0.61 -29.72 2.99 -699.15 -2.09 -31.81 16 20 C -0.26 -14.08 9.58 84.03 0.81 -13.28 16 21 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 22 C -0.05 -2.92 4.91 84.86 0.42 -2.51 16 23 N -0.94 -56.72 11.19 21.65 0.24 -56.48 16 24 Si 0.96 45.49 29.59 68.60 2.03 47.52 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 C 0.14 5.21 6.24 86.36 0.54 5.75 16 29 C -0.12 -3.61 4.96 30.67 0.15 -3.46 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.05 1.77 6.17 -2.39 -0.01 1.76 16 33 H 0.41 10.55 7.10 -92.71 -0.66 9.89 16 34 H 0.01 0.40 8.09 -2.39 -0.02 0.38 16 35 H 0.10 2.69 7.98 -2.39 -0.02 2.67 16 36 H 0.02 0.52 8.07 -2.38 -0.02 0.51 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 1.11 8.11 -2.39 -0.02 1.09 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.12 2.00 8.14 -2.39 -0.02 1.99 16 44 H 0.05 2.41 6.20 -2.39 -0.01 2.40 16 45 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.04 2.26 6.04 -2.38 -0.01 2.24 16 47 H -0.01 -0.44 7.74 -2.38 -0.02 -0.46 16 48 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 49 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 50 H 0.02 0.82 6.94 -2.39 -0.02 0.80 16 51 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 52 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -73.28 388.33 -0.52 -73.80 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.24 Total: 25.84 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 5.87 Total: 17.77 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -7.59 Total: -128.30 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -1.08 Total: -36.62 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -73.28 -0.52 -73.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045444321.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.575 kcal (2) G-P(sol) polarization free energy of solvation -73.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds