Wall clock time and date at job start Tue Mar 31 2020 20:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46090 * 2 1 4 4 C 1.34784 * 120.00093 * 60.02818 * 3 2 1 5 5 O 1.21286 * 119.99757 * 359.97438 * 4 3 2 6 6 C 1.50691 * 120.00254 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47074 * 60.00119 * 6 4 3 8 8 C 1.53002 * 109.47272 * 299.99830 * 6 4 3 9 9 C 1.52998 * 109.46943 * 300.00213 * 8 6 4 10 10 C 1.53001 * 109.46731 * 299.99645 * 9 8 6 11 11 C 1.52993 * 109.47162 * 60.00377 * 10 9 8 12 12 H 1.09000 * 109.47243 * 59.99875 * 11 10 9 13 13 C 1.50703 * 109.47386 * 179.97438 * 11 10 9 14 14 N 1.34777 * 120.00108 * 300.00388 * 13 11 10 15 15 O 1.21282 * 120.00111 * 119.99317 * 13 11 10 16 16 C 1.53001 * 109.47348 * 299.99547 * 11 10 9 17 17 C 1.53041 * 109.44867 * 119.96614 * 2 1 3 18 18 C 1.53190 * 109.31554 * 181.37773 * 17 2 1 19 19 N 1.46924 * 108.77741 * 305.36945 * 18 17 2 20 20 C 1.36941 * 120.63011 * 233.62989 * 19 18 17 21 21 H 1.07999 * 119.99853 * 152.61142 * 20 19 18 22 22 C 1.38807 * 119.99568 * 332.61102 * 20 19 18 23 23 N 1.31620 * 119.99634 * 159.28926 * 22 20 19 24 24 Si 1.86802 * 120.00391 * 339.28559 * 22 20 19 25 25 H 1.48503 * 109.46753 * 92.77712 * 24 22 20 26 26 H 1.48503 * 109.46959 * 212.77383 * 24 22 20 27 27 H 1.48493 * 109.47122 * 332.77701 * 24 22 20 28 28 C 1.46926 * 118.73741 * 53.60114 * 19 18 17 29 29 C 1.53034 * 109.46296 * 240.02591 * 2 1 3 30 30 H 1.08997 * 109.47162 * 59.99816 * 1 2 3 31 31 H 1.08994 * 109.46923 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47026 * 299.99892 * 1 2 3 33 33 H 0.96996 * 120.00412 * 240.02409 * 3 2 1 34 34 H 1.08999 * 109.47041 * 60.00283 * 8 6 4 35 35 H 1.09000 * 109.47333 * 179.97438 * 8 6 4 36 36 H 1.09000 * 109.47464 * 59.99642 * 9 8 6 37 37 H 1.08995 * 109.46821 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.46604 * 180.02562 * 10 9 8 39 39 H 1.08994 * 109.47383 * 299.99806 * 10 9 8 40 40 H 0.97008 * 119.99819 * 359.97438 * 14 13 11 41 41 H 0.96996 * 120.00476 * 179.97438 * 14 13 11 42 42 H 1.08994 * 109.46782 * 300.00317 * 16 11 10 43 43 H 1.08996 * 109.47062 * 180.02562 * 16 11 10 44 44 H 1.09007 * 109.49796 * 301.33183 * 17 2 1 45 45 H 1.08998 * 109.49623 * 61.42689 * 17 2 1 46 46 H 1.08998 * 109.58998 * 185.57751 * 18 17 2 47 47 H 1.09003 * 109.70021 * 65.22144 * 18 17 2 48 48 H 0.97006 * 120.00095 * 180.02562 * 23 22 20 49 49 H 1.09009 * 109.58294 * 186.60673 * 28 19 18 50 50 H 1.09001 * 109.70245 * 66.25959 * 28 19 18 51 51 H 1.08997 * 109.49939 * 298.58464 * 29 2 1 52 52 H 1.09004 * 109.49495 * 58.64566 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2110 1.0112 5 8 0.9956 1.8142 1.9208 6 6 2.1953 3.6317 1.0115 7 1 1.8319 4.1458 0.1217 8 6 3.7253 3.6315 1.0113 9 6 4.2354 2.9098 2.2602 10 6 3.7257 3.6308 3.5097 11 6 2.1957 3.6310 3.5099 12 1 1.8322 2.6034 3.5097 13 6 1.6936 4.3407 4.7409 14 7 2.0193 3.8794 5.9647 15 8 0.9965 5.3270 4.6304 16 6 1.6856 4.3527 2.2610 17 6 2.0396 -0.7208 1.2502 18 6 3.5711 -0.6890 1.2646 19 7 4.0677 -1.2493 0.0004 20 6 4.9754 -2.2747 0.0005 21 1 5.0114 -2.9640 -0.8300 22 6 5.8491 -2.4279 1.0682 23 7 6.4238 -3.5917 1.2864 24 14 6.2093 -0.9824 2.1953 25 1 5.2778 -1.0122 3.3515 26 1 7.6085 -1.0729 2.6845 27 1 6.0279 0.2867 1.4460 28 6 3.5714 -0.6890 -1.2639 29 6 2.0399 -0.7209 -1.2499 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.5754 1.6988 -0.7276 34 1 4.0885 3.1179 0.1210 35 1 4.0888 4.6591 1.0110 36 1 3.8719 1.8822 2.2600 37 1 5.3253 2.9101 2.2602 38 1 4.0894 3.1169 4.3994 39 1 4.0892 4.6584 3.5099 40 1 2.5767 3.0904 6.0531 41 1 1.6965 4.3363 6.7570 42 1 2.0491 5.3802 2.2612 43 1 0.5956 4.3532 2.2614 44 1 1.6569 -0.2207 2.1399 45 1 1.6973 -1.7556 1.2384 46 1 3.9412 -1.2849 2.0988 47 1 3.9163 0.3397 1.3689 48 1 7.0341 -3.6989 2.0327 49 1 3.9417 -1.2851 -2.0981 50 1 3.9146 0.3402 -1.3696 51 1 1.6976 -1.7556 -1.2382 52 1 1.6570 -0.2211 -2.1397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045577201.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:53 Heat of formation + Delta-G solvation = -70.299884 kcal Electronic energy + Delta-G solvation = -32850.277950 eV Core-core repulsion = 28849.297400 eV Total energy + Delta-G solvation = -4000.980550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.03711 -39.66574 -38.14825 -36.59402 -34.60659 -33.82576 -32.41007 -31.49002 -30.95885 -30.39920 -30.29727 -27.73732 -24.25011 -24.01786 -23.56315 -22.87118 -21.83910 -21.00531 -20.27108 -19.47743 -18.86054 -17.66919 -17.04784 -16.68238 -16.45499 -15.60437 -15.32399 -15.24412 -14.95310 -14.61159 -14.12482 -14.04660 -13.97105 -13.74774 -13.57966 -13.45295 -13.21487 -12.74229 -12.48798 -12.43211 -12.24574 -12.09517 -12.03633 -11.93787 -11.70414 -11.44973 -11.27673 -11.13091 -11.06382 -10.75740 -10.69218 -10.54602 -10.28474 -10.20655 -9.96247 -9.81090 -9.75617 -9.67669 -9.50938 -9.07149 -8.82079 -8.56927 -6.98828 -5.98103 -3.33565 2.61804 2.82039 3.28037 3.37192 3.42272 3.45510 3.47809 4.49400 4.50372 4.56627 4.61454 4.84980 4.95210 5.04417 5.05016 5.13620 5.18050 5.21800 5.29286 5.31283 5.40158 5.43862 5.50113 5.57512 5.75538 5.79029 5.87064 5.88317 5.95736 5.98205 6.01337 6.04184 6.08282 6.12218 6.17709 6.21599 6.30068 6.37474 6.49399 6.53034 6.55272 6.64351 6.67471 6.68993 6.83206 7.00195 7.23568 7.76988 7.93691 8.20414 8.29549 8.45713 8.91390 9.69279 10.07218 11.17875 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.004889 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.537290 B = 5725.464017 C = 6947.220599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 N -0.713 5.713 4 C 0.522 3.478 5 O -0.537 6.537 6 C -0.111 4.111 7 H 0.098 0.902 8 C -0.110 4.110 9 C -0.130 4.130 10 C -0.108 4.108 11 C -0.122 4.122 12 H 0.130 0.870 13 C 0.527 3.473 14 N -0.858 5.858 15 O -0.552 6.552 16 C -0.072 4.072 17 C -0.144 4.144 18 C 0.129 3.871 19 N -0.603 5.603 20 C -0.260 4.260 21 H 0.084 0.916 22 C 0.024 3.976 23 N -0.908 5.908 24 Si 0.882 3.118 25 H -0.290 1.290 26 H -0.306 1.306 27 H -0.268 1.268 28 C 0.150 3.850 29 C -0.139 4.139 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.397 0.603 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.402 0.598 41 H 0.397 0.603 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.029 0.971 48 H 0.262 0.738 49 H 0.064 0.936 50 H 0.018 0.982 51 H 0.078 0.922 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.926 14.796 0.661 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.098 3.902 3 N -0.364 5.364 4 C 0.308 3.692 5 O -0.415 6.415 6 C -0.133 4.133 7 H 0.116 0.884 8 C -0.148 4.148 9 C -0.167 4.167 10 C -0.146 4.146 11 C -0.143 4.143 12 H 0.147 0.853 13 C 0.313 3.687 14 N -0.421 5.421 15 O -0.429 6.429 16 C -0.110 4.110 17 C -0.183 4.183 18 C 0.004 3.996 19 N -0.327 5.327 20 C -0.388 4.388 21 H 0.102 0.898 22 C -0.175 4.175 23 N -0.551 5.551 24 Si 0.713 3.287 25 H -0.217 1.217 26 H -0.234 1.234 27 H -0.193 1.193 28 C 0.023 3.977 29 C -0.178 4.178 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.232 0.768 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.231 0.769 41 H 0.227 0.773 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.046 0.954 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.036 0.964 51 H 0.097 0.903 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.722 14.992 1.104 17.380 hybrid contribution 0.785 0.532 0.767 1.219 sum -7.937 15.524 1.871 17.536 Atomic orbital electron populations 1.22207 0.95028 1.02035 1.02504 1.20247 0.92957 0.80274 0.96696 1.46196 1.53073 1.12100 1.25012 1.20452 0.79704 0.87265 0.81731 1.90534 1.38337 1.77153 1.35523 1.21441 0.97270 0.93792 1.00763 0.88413 1.21533 0.92715 1.01646 0.98872 1.21708 1.01040 1.00253 0.93730 1.21525 0.93176 1.01120 0.98768 1.21662 0.96621 1.03632 0.92363 0.85269 1.20797 0.78922 0.83695 0.85314 1.43923 1.56172 1.33898 1.08121 1.90700 1.38340 1.26720 1.87127 1.21052 1.01452 0.97900 0.90643 1.22405 0.98414 1.00153 0.97370 1.21345 0.91675 0.96744 0.89826 1.44327 1.48807 1.40252 0.99326 1.18917 1.09712 1.02713 1.07442 0.89791 1.25269 0.97451 0.96625 0.98189 1.69841 1.32705 1.21987 1.30607 0.86955 0.76057 0.85040 0.80690 1.21750 1.23419 1.19324 1.20872 0.90687 0.96261 0.89855 1.22330 0.99202 1.00945 0.95339 0.93334 0.92179 0.90666 0.76805 0.91132 0.90751 0.90749 0.91148 0.91671 0.91607 0.76947 0.77260 0.90956 0.90664 0.90674 0.91339 0.91472 0.95371 0.92822 0.91739 0.96419 0.90336 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 8.40 37.16 0.31 -1.85 16 2 C 0.18 2.69 0.66 -131.78 -0.09 2.61 16 3 N -0.71 -9.29 4.00 -47.57 -0.19 -9.48 16 4 C 0.52 6.96 5.06 -10.99 -0.06 6.90 16 5 O -0.54 -8.48 9.88 5.55 0.05 -8.42 16 6 C -0.11 -1.20 3.01 -91.77 -0.28 -1.47 16 7 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 8 C -0.11 -1.15 5.36 -26.73 -0.14 -1.29 16 9 C -0.13 -1.62 5.70 -26.73 -0.15 -1.77 16 10 C -0.11 -1.19 5.10 -26.73 -0.14 -1.32 16 11 C -0.12 -1.49 2.23 -91.77 -0.20 -1.69 16 12 H 0.13 1.81 5.51 -51.93 -0.29 1.53 16 13 C 0.53 6.73 7.43 -10.98 -0.08 6.65 16 14 N -0.86 -7.86 8.77 31.22 0.27 -7.59 16 15 O -0.55 -8.96 16.82 5.56 0.09 -8.87 16 16 C -0.07 -0.86 3.66 -26.73 -0.10 -0.96 16 17 C -0.14 -2.56 4.67 -26.61 -0.12 -2.69 16 18 C 0.13 2.69 3.95 -3.71 -0.01 2.68 16 19 N -0.60 -13.35 2.77 -172.32 -0.48 -13.83 16 20 C -0.26 -6.98 10.03 -15.06 -0.15 -7.13 16 21 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 22 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 23 N -0.91 -27.39 13.97 55.49 0.78 -26.62 16 24 Si 0.88 21.66 24.35 -169.99 -4.14 17.52 16 25 H -0.29 -6.96 6.61 56.52 0.37 -6.58 16 26 H -0.31 -7.74 7.11 56.52 0.40 -7.34 16 27 H -0.27 -6.26 6.65 56.52 0.38 -5.89 16 28 C 0.15 2.62 6.24 -3.71 -0.02 2.60 16 29 C -0.14 -2.01 4.96 -26.62 -0.13 -2.15 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.13 6.17 -51.93 -0.32 0.81 16 33 H 0.40 4.54 6.69 -40.82 -0.27 4.27 16 34 H 0.07 0.73 7.56 -51.93 -0.39 0.34 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.14 4.89 -51.93 -0.25 0.88 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.65 7.57 -51.93 -0.39 0.26 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.40 2.91 8.25 -40.82 -0.34 2.57 16 41 H 0.40 3.08 8.93 -40.82 -0.36 2.72 16 42 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 43 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 44 H 0.07 1.36 6.20 -51.92 -0.32 1.04 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.07 1.60 4.50 -51.93 -0.23 1.37 16 47 H 0.03 0.58 4.35 -51.93 -0.23 0.35 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.06 1.15 7.93 -51.92 -0.41 0.74 16 50 H 0.02 0.29 6.94 -51.93 -0.36 -0.07 16 51 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 52 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -33.10 373.87 -7.86 -40.96 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -8.43 Total: 11.01 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -1.46 Total: -0.32 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.38 Total: -57.52 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.15 Total: -17.29 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.52 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.10 -7.86 -40.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045577201.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.341 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds