Wall clock time and date at job start Tue Mar 31 2020 20:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46994 * 2 1 4 4 C 1.53003 * 109.46855 * 240.00141 * 2 1 3 5 5 N 1.46497 * 109.47207 * 120.00289 * 2 1 3 6 6 C 1.46763 * 124.35250 * 60.00073 * 5 2 1 7 7 C 1.54478 * 105.47505 * 163.00395 * 6 5 2 8 8 H 1.09005 * 110.96947 * 143.57303 * 7 6 5 9 9 C 1.50703 * 110.96623 * 267.29403 * 7 6 5 10 10 O 1.21275 * 120.00396 * 0.02562 * 9 7 6 11 11 N 1.34779 * 119.99639 * 179.97438 * 9 7 6 12 12 C 1.46501 * 120.00052 * 179.72543 * 11 9 7 13 13 C 1.53000 * 110.63943 * 300.98285 * 12 11 9 14 14 C 1.55151 * 110.72331 * 177.83527 * 12 11 9 15 15 C 1.55382 * 101.36788 * 277.04370 * 14 12 11 16 16 N 1.47422 * 104.87467 * 323.01762 * 15 14 12 17 17 C 1.36939 * 125.65120 * 204.09863 * 16 15 14 18 18 H 1.08000 * 119.99984 * 169.98022 * 17 16 15 19 19 C 1.38811 * 119.99791 * 349.97888 * 17 16 15 20 20 N 1.31616 * 119.99914 * 350.42504 * 19 17 16 21 21 Si 1.86803 * 119.99933 * 170.41988 * 19 17 16 22 22 H 1.48502 * 109.46857 * 94.14591 * 21 19 17 23 23 H 1.48499 * 109.47008 * 214.14278 * 21 19 17 24 24 H 1.48499 * 109.47116 * 334.14604 * 21 19 17 25 25 C 1.47029 * 108.70369 * 24.12815 * 16 15 14 26 26 C 1.54629 * 101.76543 * 25.41490 * 7 6 5 27 27 C 1.34422 * 124.34693 * 240.01850 * 5 2 1 28 28 O 1.21275 * 124.94206 * 0.35657 * 27 5 2 29 29 H 1.09002 * 109.46698 * 299.99809 * 1 2 3 30 30 H 1.08995 * 109.47063 * 59.99607 * 1 2 3 31 31 H 1.09000 * 109.47100 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46506 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47536 * 300.00103 * 3 2 1 34 34 H 1.08993 * 109.47276 * 60.00413 * 3 2 1 35 35 H 1.09001 * 109.47202 * 300.00257 * 4 2 1 36 36 H 1.09003 * 109.46820 * 60.00047 * 4 2 1 37 37 H 1.09002 * 109.47227 * 179.97438 * 4 2 1 38 38 H 1.09003 * 110.24337 * 43.99996 * 6 5 2 39 39 H 1.09000 * 110.31498 * 282.04442 * 6 5 2 40 40 H 0.96998 * 120.00321 * 0.02562 * 11 9 7 41 41 H 1.08997 * 109.47941 * 59.29611 * 13 12 11 42 42 H 1.09000 * 109.47188 * 179.30279 * 13 12 11 43 43 H 1.09005 * 109.46618 * 299.29006 * 13 12 11 44 44 H 1.09001 * 111.00230 * 35.21555 * 14 12 11 45 45 H 1.09004 * 111.00389 * 159.06367 * 14 12 11 46 46 H 1.08998 * 110.34641 * 204.16451 * 15 14 12 47 47 H 1.09006 * 110.44525 * 81.91384 * 15 14 12 48 48 H 0.97005 * 119.99925 * 179.97438 * 20 19 17 49 49 H 1.08993 * 109.88339 * 239.52124 * 25 16 15 50 50 H 1.09004 * 110.00833 * 118.43185 * 25 16 15 51 51 H 1.09000 * 110.48500 * 93.88113 * 26 7 6 52 52 H 1.09003 * 110.48340 * 216.52881 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 1.7233 -2.0908 1.5224 7 6 2.7663 -2.4943 2.5881 8 1 2.3294 -3.1665 3.3267 9 6 3.9793 -3.1174 1.9467 10 8 4.0322 -3.2403 0.7414 11 7 5.0058 -3.5370 2.7126 12 6 6.1825 -4.1483 2.0896 13 6 5.7855 -5.3918 1.2916 14 6 7.2497 -4.5000 3.1594 15 6 7.9695 -3.1341 3.3347 16 7 8.0044 -2.5485 1.9823 17 6 8.9040 -1.6158 1.5394 18 1 8.9510 -1.3668 0.4896 19 6 9.7553 -0.9903 2.4400 20 7 9.5756 -1.1486 3.7342 21 14 11.1559 0.0761 1.8150 22 1 10.7146 1.4931 1.7645 23 1 12.3188 -0.0479 2.7301 24 1 11.5476 -0.3692 0.4535 25 6 6.9131 -3.1312 1.1878 26 6 3.1155 -1.1273 3.2210 27 6 2.7941 -0.1232 2.1359 28 8 3.1805 1.0261 2.1165 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9563 0.8899 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7209 -1.2496 38 1 1.8293 -2.7152 0.6353 39 1 0.7155 -2.1805 1.9279 40 1 4.9637 -3.4384 3.6767 41 1 5.0687 -5.1142 0.5188 42 1 6.6719 -5.8236 0.8269 43 1 5.3332 -6.1238 1.9608 44 1 6.7799 -4.8200 4.0895 45 1 7.9380 -5.2601 2.7895 46 1 8.9819 -3.2846 3.7093 47 1 7.4068 -2.4914 4.0119 48 1 10.1707 -0.7118 4.3635 49 1 7.3209 -3.6373 0.3128 50 1 6.2212 -2.3493 0.8746 51 1 2.5002 -0.9466 4.1024 52 1 4.1739 -1.0852 3.4781 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046366757.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:06 Heat of formation + Delta-G solvation = -39.635201 kcal Electronic energy + Delta-G solvation = -31957.891049 eV Core-core repulsion = 27958.240219 eV Total energy + Delta-G solvation = -3999.650829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.11233 -39.61397 -37.45689 -36.64443 -35.45008 -34.01004 -32.03993 -30.64164 -29.65261 -28.66514 -27.96085 -27.42540 -27.07547 -25.69855 -24.08039 -23.18913 -21.52321 -20.53937 -20.12175 -19.04234 -18.56783 -17.61496 -16.80366 -16.54116 -15.66271 -15.57663 -15.15577 -14.72711 -14.64587 -14.15122 -14.13894 -13.88903 -13.75227 -13.58130 -13.49481 -13.00461 -12.96702 -12.72519 -12.32322 -12.23264 -12.12222 -12.04975 -11.88473 -11.73429 -11.70087 -11.62684 -11.60018 -11.52561 -11.17013 -11.02518 -10.94543 -10.78302 -10.43857 -10.37609 -10.07374 -9.98976 -9.67005 -9.33558 -9.29805 -8.68000 -8.63288 -8.54447 -6.75105 -5.71633 -3.02494 2.68705 2.78226 2.95489 3.32808 3.43718 3.49356 3.51196 4.21966 4.29684 4.53388 4.63743 4.74669 4.83144 4.85489 4.97778 5.09932 5.20852 5.31140 5.37601 5.41487 5.46355 5.49206 5.53876 5.54895 5.63220 5.67868 5.70276 5.72143 5.76535 5.79283 5.89255 5.99408 6.01479 6.12785 6.18873 6.30030 6.30853 6.36320 6.41404 6.48265 6.67372 6.70752 6.83182 7.12145 7.20527 7.46180 7.54922 7.78198 7.80934 8.29054 8.30096 8.46271 9.23813 9.85461 10.52400 11.41966 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.003993 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.376765 B = 7010.869480 C = 8264.058343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.176 3.824 3 C -0.142 4.142 4 C -0.155 4.155 5 N -0.606 5.606 6 C 0.119 3.881 7 C -0.126 4.126 8 H 0.120 0.880 9 C 0.522 3.478 10 O -0.529 6.529 11 N -0.704 5.704 12 C 0.161 3.839 13 C -0.150 4.150 14 C -0.149 4.149 15 C 0.174 3.826 16 N -0.602 5.602 17 C -0.225 4.225 18 H 0.074 0.926 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.138 3.862 26 C -0.148 4.148 27 C 0.521 3.479 28 O -0.522 6.522 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.398 0.602 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.025 0.975 48 H 0.252 0.748 49 H 0.028 0.972 50 H 0.031 0.969 51 H 0.112 0.888 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.143 -6.323 -1.275 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.093 3.907 3 C -0.199 4.199 4 C -0.213 4.213 5 N -0.341 5.341 6 C -0.005 4.005 7 C -0.148 4.148 8 H 0.138 0.862 9 C 0.307 3.693 10 O -0.405 6.405 11 N -0.355 5.355 12 C 0.075 3.925 13 C -0.208 4.208 14 C -0.188 4.188 15 C 0.049 3.951 16 N -0.328 5.328 17 C -0.354 4.354 18 H 0.092 0.908 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.012 3.988 26 C -0.189 4.189 27 C 0.308 3.692 28 O -0.398 6.398 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.232 0.768 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.043 0.957 48 H 0.062 0.938 49 H 0.046 0.954 50 H 0.049 0.951 51 H 0.130 0.870 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -19.738 -5.621 -2.160 20.636 hybrid contribution 0.725 0.559 0.329 0.973 sum -19.013 -5.061 -1.831 19.760 Atomic orbital electron populations 1.22179 0.94554 1.02146 1.02404 1.20424 0.93359 0.93005 0.83952 1.22101 1.02979 0.93148 1.01657 1.22151 1.02588 1.00432 0.96151 1.48293 1.51102 1.12260 1.22397 1.21878 0.96665 0.82852 0.99081 1.22330 0.95586 0.97758 0.99134 0.86179 1.20038 0.83788 0.78043 0.87437 1.90663 1.80494 1.55330 1.14025 1.45932 1.17699 1.61666 1.10178 1.21329 0.84161 0.92762 0.94271 1.22042 1.02333 0.95935 1.00488 1.23428 0.97138 1.01391 0.96799 1.21473 0.99201 0.87109 0.87286 1.44461 1.31762 1.47259 1.09325 1.19015 1.09961 1.13765 0.92610 0.90790 1.24769 1.00459 0.99735 0.95299 1.69932 1.39231 1.47586 0.99990 0.86152 0.81926 0.80296 0.77733 1.21611 1.21621 1.20619 1.21575 0.89999 0.94073 0.93182 1.22404 1.05794 0.92177 0.98502 1.20697 0.77398 0.87913 0.83199 1.90746 1.53880 1.17819 1.77370 0.92327 0.91405 0.92316 0.91035 0.92602 0.91417 0.92131 0.91765 0.91627 0.88600 0.90772 0.76776 0.90794 0.91856 0.93196 0.91712 0.90574 0.91223 0.95676 0.93814 0.95398 0.95076 0.87000 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.54 37.16 0.32 -1.04 16 2 C 0.18 2.07 1.20 -131.82 -0.16 1.91 16 3 C -0.14 -1.89 7.00 37.16 0.26 -1.63 16 4 C -0.16 -1.81 8.49 37.16 0.32 -1.49 16 5 N -0.61 -7.70 2.76 -157.57 -0.43 -8.14 16 6 C 0.12 1.19 5.92 -3.12 -0.02 1.17 16 7 C -0.13 -1.28 3.54 -90.14 -0.32 -1.60 16 8 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 9 C 0.52 7.45 6.30 -10.98 -0.07 7.38 16 10 O -0.53 -9.17 12.48 5.56 0.07 -9.10 16 11 N -0.70 -10.20 5.07 -45.92 -0.23 -10.43 16 12 C 0.16 2.73 0.80 -129.99 -0.10 2.63 16 13 C -0.15 -2.21 8.40 37.16 0.31 -1.90 16 14 C -0.15 -2.56 6.11 -24.33 -0.15 -2.71 16 15 C 0.17 4.06 5.41 -2.27 -0.01 4.05 16 16 N -0.60 -15.62 3.40 -169.77 -0.58 -16.20 16 17 C -0.23 -6.50 10.24 -15.06 -0.15 -6.66 16 18 H 0.07 2.12 7.85 -52.49 -0.41 1.71 16 19 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 20 N -0.92 -27.13 10.68 55.49 0.59 -26.54 16 21 Si 0.91 22.76 29.56 -169.99 -5.03 17.74 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.14 3.07 6.16 -3.06 -0.02 3.06 16 26 C -0.15 -1.76 6.40 -26.74 -0.17 -1.93 16 27 C 0.52 8.01 7.84 -10.86 -0.09 7.92 16 28 O -0.52 -10.06 13.99 5.56 0.08 -9.98 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 32 H 0.07 1.18 7.08 -51.93 -0.37 0.82 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.97 7.06 -51.93 -0.37 0.60 16 35 H 0.06 0.67 7.21 -51.93 -0.37 0.29 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.10 1.06 6.00 -51.93 -0.31 0.74 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.40 4.88 8.48 -40.82 -0.35 4.53 16 41 H 0.07 1.18 6.20 -51.93 -0.32 0.86 16 42 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.92 8.06 -51.93 -0.42 0.50 16 45 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 46 H 0.07 1.82 6.94 -51.93 -0.36 1.46 16 47 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 48 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.03 0.63 7.80 -51.93 -0.41 0.23 16 50 H 0.03 0.77 6.69 -51.93 -0.35 0.42 16 51 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 52 H 0.11 1.58 7.84 -51.93 -0.41 1.17 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -35.10 397.95 -8.73 -43.82 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -9.05 Total: 3.95 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -0.15 Total: 8.87 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.65 Total: -61.30 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.15 Total: -19.08 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.74 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.10 -8.73 -43.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046366757.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.189 kcal (2) G-P(sol) polarization free energy of solvation -35.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds