Wall clock time and date at job start Tue Mar 31 2020 20:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47689 * 2 1 4 4 C 1.53000 * 109.47216 * 239.99395 * 2 1 3 5 5 N 1.46507 * 109.46966 * 120.00209 * 2 1 3 6 6 C 1.46759 * 124.34841 * 179.97438 * 5 2 1 7 7 C 1.54484 * 105.47195 * 197.03183 * 6 5 2 8 8 H 1.09001 * 110.99718 * 92.71357 * 7 6 5 9 9 C 1.50703 * 110.96761 * 216.45948 * 7 6 5 10 10 O 1.21273 * 120.00274 * 353.83564 * 9 7 6 11 11 N 1.34778 * 119.99759 * 173.83170 * 9 7 6 12 12 C 1.46502 * 119.99873 * 180.02562 * 11 9 7 13 13 C 1.53000 * 110.91392 * 62.45132 * 12 11 9 14 14 C 1.55448 * 111.01096 * 186.50321 * 12 11 9 15 15 C 1.54321 * 102.96961 * 82.52411 * 14 12 11 16 16 N 1.47026 * 107.26791 * 22.19024 * 15 14 12 17 17 C 1.36941 * 125.64206 * 181.07813 * 16 15 14 18 18 H 1.08004 * 119.99539 * 179.97438 * 17 16 15 19 19 C 1.38807 * 120.00624 * 359.97438 * 17 16 15 20 20 N 1.31626 * 119.99751 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00379 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46885 * 59.99761 * 21 19 17 23 23 H 1.48501 * 109.47417 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47045 * 300.00177 * 21 19 17 25 25 C 1.47419 * 108.70576 * 1.06162 * 16 15 14 26 26 C 1.54619 * 101.76449 * 334.58070 * 7 6 5 27 27 C 1.34416 * 124.34893 * 359.96524 * 5 2 1 28 28 O 1.21280 * 124.94616 * 359.61691 * 27 5 2 29 29 H 1.09000 * 109.46603 * 300.00007 * 1 2 3 30 30 H 1.09002 * 109.47046 * 60.00112 * 1 2 3 31 31 H 1.08998 * 109.46853 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47514 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46785 * 300.00048 * 3 2 1 34 34 H 1.08998 * 109.47332 * 59.99368 * 3 2 1 35 35 H 1.09001 * 109.47279 * 300.00697 * 4 2 1 36 36 H 1.09002 * 109.46710 * 60.00287 * 4 2 1 37 37 H 1.08998 * 109.47337 * 180.02562 * 4 2 1 38 38 H 1.08995 * 110.25183 * 78.03062 * 6 5 2 39 39 H 1.08999 * 110.24563 * 316.02930 * 6 5 2 40 40 H 0.97001 * 120.00073 * 0.02562 * 11 9 7 41 41 H 1.09000 * 109.47194 * 297.54709 * 13 12 11 42 42 H 1.09001 * 109.47578 * 57.55154 * 13 12 11 43 43 H 1.09003 * 109.46933 * 177.54882 * 13 12 11 44 44 H 1.08998 * 110.70855 * 324.15215 * 14 12 11 45 45 H 1.08998 * 110.85957 * 200.96831 * 14 12 11 46 46 H 1.08998 * 109.88101 * 262.77542 * 15 14 12 47 47 H 1.09000 * 109.88483 * 141.60664 * 15 14 12 48 48 H 0.96995 * 120.00037 * 179.97438 * 20 19 17 49 49 H 1.09002 * 110.36926 * 94.70918 * 25 16 15 50 50 H 1.08995 * 110.36556 * 216.92202 * 25 16 15 51 51 H 1.09001 * 110.48859 * 143.47443 * 26 7 6 52 52 H 1.08996 * 110.49003 * 266.11991 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 3.4367 -0.8796 1.5223 7 6 3.4693 -1.9980 2.5875 8 1 3.6016 -2.9754 2.1236 9 6 4.5465 -1.7386 3.6090 10 8 5.3160 -0.8136 3.4573 11 7 4.6546 -2.5345 4.6912 12 6 5.7014 -2.2820 5.6846 13 6 5.5147 -0.9115 6.3384 14 6 5.7407 -3.4112 6.7522 15 6 6.5774 -4.5100 6.0636 16 7 7.3851 -3.8561 5.0235 17 6 8.2498 -4.4877 4.1698 18 1 8.7992 -3.9155 3.4368 19 6 8.4202 -5.8631 4.2465 20 7 7.7510 -6.5603 5.1402 21 14 9.5991 -6.7247 3.0816 22 1 10.9684 -6.1823 3.2725 23 1 9.5994 -8.1822 3.3659 24 1 9.1666 -6.4944 1.6798 25 6 7.1096 -2.4081 5.0515 26 6 2.0643 -1.8714 3.2205 27 6 1.2248 -1.2326 2.1361 28 8 0.0123 -1.2132 2.1172 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7218 -1.2489 38 1 3.8562 0.0407 1.9287 39 1 3.9899 -1.1876 0.6351 40 1 4.0393 -3.2746 4.8124 41 1 5.6053 -0.1324 5.5815 42 1 4.5274 -0.8592 6.7973 43 1 6.2785 -0.7663 7.1024 44 1 4.7352 -3.7714 6.9694 45 1 6.2308 -3.0673 7.6630 46 1 5.9171 -5.2492 5.6101 47 1 7.2301 -4.9904 6.7924 48 1 7.8697 -7.5215 5.1935 49 1 7.8488 -1.8931 5.6651 50 1 7.1084 -2.0026 4.0399 51 1 1.6716 -2.8553 3.4774 52 1 2.0993 -1.2316 4.1022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046366758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:09 Heat of formation + Delta-G solvation = -41.713345 kcal Electronic energy + Delta-G solvation = -31197.780222 eV Core-core repulsion = 27198.039277 eV Total energy + Delta-G solvation = -3999.740944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.16529 -39.72368 -37.50068 -36.87127 -35.57288 -34.00641 -32.09710 -30.73011 -29.74282 -28.69878 -28.09830 -27.60346 -27.24884 -25.69837 -24.08870 -23.26396 -21.65187 -20.57102 -20.01722 -19.11135 -18.72145 -17.57829 -16.82541 -16.69154 -15.84240 -15.62563 -15.33624 -14.79862 -14.65691 -14.32415 -14.20572 -14.04329 -13.82468 -13.71907 -13.46191 -13.31558 -13.06158 -12.81598 -12.47920 -12.33054 -12.29777 -12.06831 -11.95062 -11.89759 -11.80179 -11.70755 -11.59211 -11.54766 -11.23618 -11.22009 -10.91815 -10.88723 -10.44112 -10.38897 -10.12861 -10.02395 -9.67451 -9.64741 -9.28598 -8.82779 -8.67917 -8.56840 -6.81755 -5.72335 -3.04347 2.45261 2.69358 2.82680 3.36921 3.39773 3.44253 3.45137 4.12822 4.19178 4.49396 4.57880 4.63321 4.69550 4.75360 4.81759 4.99762 5.22948 5.23785 5.29391 5.34825 5.36341 5.42484 5.44473 5.47346 5.49774 5.58211 5.58745 5.63198 5.68632 5.69885 5.79437 5.83222 5.97029 6.03668 6.10164 6.11422 6.12251 6.31081 6.37305 6.48337 6.50387 6.63502 6.79527 6.98911 7.08380 7.52762 7.54662 7.77451 7.82438 8.05283 8.24813 8.47093 9.22129 9.82287 10.48220 11.39572 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.003084 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.792675 B = 9076.409776 C = 9981.973060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.173 3.827 3 C -0.158 4.158 4 C -0.159 4.159 5 N -0.609 5.609 6 C 0.119 3.881 7 C -0.124 4.124 8 H 0.119 0.881 9 C 0.531 3.469 10 O -0.535 6.535 11 N -0.696 5.696 12 C 0.155 3.845 13 C -0.148 4.148 14 C -0.146 4.146 15 C 0.178 3.822 16 N -0.603 5.603 17 C -0.223 4.223 18 H 0.075 0.925 19 C -0.009 4.009 20 N -0.924 5.924 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.132 3.868 26 C -0.146 4.146 27 C 0.522 3.478 28 O -0.531 6.531 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.399 0.601 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.043 0.957 48 H 0.252 0.748 49 H 0.024 0.976 50 H 0.056 0.944 51 H 0.109 0.891 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.290 12.403 -5.709 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.090 3.910 3 C -0.216 4.216 4 C -0.217 4.217 5 N -0.344 5.344 6 C -0.004 4.004 7 C -0.146 4.146 8 H 0.137 0.863 9 C 0.315 3.685 10 O -0.413 6.413 11 N -0.345 5.345 12 C 0.069 3.931 13 C -0.207 4.207 14 C -0.185 4.185 15 C 0.053 3.947 16 N -0.329 5.329 17 C -0.351 4.351 18 H 0.093 0.907 19 C -0.205 4.205 20 N -0.573 5.573 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.005 3.995 26 C -0.186 4.186 27 C 0.310 3.690 28 O -0.408 6.408 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.233 0.767 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.042 0.958 50 H 0.074 0.926 51 H 0.128 0.872 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.305 12.884 -5.929 19.447 hybrid contribution 0.565 -1.096 -0.513 1.335 sum -12.741 11.788 -6.442 18.514 Atomic orbital electron populations 1.22097 0.92146 1.03542 1.01944 1.20472 0.95225 0.91645 0.83681 1.22192 1.01856 0.95023 1.02534 1.22200 1.01816 1.01006 0.96691 1.48474 1.07309 1.56155 1.22425 1.21915 0.81416 0.99098 0.98011 1.22255 0.94032 1.01992 0.96328 0.86348 1.19813 0.84606 0.82327 0.81707 1.90662 1.43474 1.31038 1.76113 1.45758 1.33883 1.32196 1.22700 1.21559 0.88707 0.94512 0.88332 1.21979 1.01100 0.96912 1.00689 1.23278 1.00841 0.96978 0.97419 1.21148 0.92419 0.90809 0.90340 1.44430 1.49159 1.00535 1.38783 1.19006 1.15855 0.90093 1.10163 0.90667 1.24758 1.00230 0.96229 0.99265 1.69935 1.44614 1.06116 1.36590 0.86219 0.80754 0.78600 0.80318 1.21209 1.21646 1.21282 1.21872 0.91221 0.87205 0.99210 1.22372 0.93508 1.04076 0.98693 1.20727 0.87344 0.77928 0.83026 1.90722 1.12669 1.59935 1.77471 0.91281 0.92487 0.91284 0.91906 0.91336 0.92140 0.92054 0.91268 0.91939 0.89072 0.89783 0.76695 0.91090 0.93130 0.91845 0.91775 0.90905 0.93655 0.93885 0.93807 0.95828 0.92605 0.87232 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 7.00 37.16 0.26 -1.15 16 2 C 0.17 1.63 1.20 -131.82 -0.16 1.47 16 3 C -0.16 -1.29 8.54 37.15 0.32 -0.98 16 4 C -0.16 -1.29 8.49 37.16 0.32 -0.97 16 5 N -0.61 -6.50 2.76 -157.58 -0.43 -6.93 16 6 C 0.12 1.26 5.91 -3.12 -0.02 1.24 16 7 C -0.12 -1.36 3.54 -90.14 -0.32 -1.68 16 8 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 9 C 0.53 7.57 6.47 -10.98 -0.07 7.50 16 10 O -0.54 -9.16 12.37 5.56 0.07 -9.09 16 11 N -0.70 -10.06 5.12 -45.48 -0.23 -10.30 16 12 C 0.16 2.55 0.83 -129.51 -0.11 2.44 16 13 C -0.15 -2.09 8.60 37.16 0.32 -1.78 16 14 C -0.15 -2.46 6.00 -24.74 -0.15 -2.61 16 15 C 0.18 4.04 5.36 -3.06 -0.02 4.03 16 16 N -0.60 -14.92 3.40 -170.08 -0.58 -15.49 16 17 C -0.22 -6.14 10.28 -15.06 -0.15 -6.30 16 18 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -26.44 10.31 55.49 0.57 -25.87 16 21 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.13 2.76 6.10 -2.53 -0.02 2.74 16 26 C -0.15 -1.45 6.37 -26.74 -0.17 -1.62 16 27 C 0.52 6.32 7.84 -10.86 -0.09 6.23 16 28 O -0.53 -7.87 13.99 5.56 0.08 -7.79 16 29 H 0.07 0.81 7.06 -51.93 -0.37 0.44 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.81 7.08 -51.93 -0.37 0.44 16 32 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.49 7.21 -51.93 -0.37 0.12 16 38 H 0.09 1.06 7.06 -51.93 -0.37 0.70 16 39 H 0.08 0.83 7.12 -51.93 -0.37 0.46 16 40 H 0.40 5.05 8.49 -40.82 -0.35 4.71 16 41 H 0.07 1.09 6.54 -51.93 -0.34 0.75 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 44 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 45 H 0.07 1.15 8.03 -51.93 -0.42 0.74 16 46 H 0.05 1.13 7.38 -51.93 -0.38 0.74 16 47 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.02 0.51 8.04 -51.93 -0.42 0.09 16 50 H 0.06 1.25 6.31 -51.93 -0.33 0.93 16 51 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.11 1.04 7.89 -51.93 -0.41 0.63 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -32.35 397.91 -8.76 -41.11 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -9.05 Total: 3.21 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -0.15 Total: 8.23 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.67 Total: -58.59 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.15 Total: -16.88 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.35 -8.76 -41.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046366758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.608 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds