Wall clock time and date at job start Tue Mar 31 2020 20:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47059 * 2 1 4 4 C 1.53001 * 109.47822 * 239.99783 * 2 1 3 5 5 N 1.46497 * 109.47259 * 119.99698 * 2 1 3 6 6 C 1.46767 * 124.35353 * 179.97438 * 5 2 1 7 7 C 1.54476 * 105.47145 * 197.03587 * 6 5 2 8 8 H 1.08999 * 111.00097 * 216.45037 * 7 6 5 9 9 C 1.50704 * 110.97129 * 92.70435 * 7 6 5 10 10 O 1.21279 * 119.99650 * 6.16031 * 9 7 6 11 11 N 1.34770 * 120.00062 * 186.16754 * 9 7 6 12 12 C 1.46500 * 120.00117 * 179.97438 * 11 9 7 13 13 C 1.53002 * 110.63918 * 303.14081 * 12 11 9 14 14 C 1.55155 * 110.72249 * 179.97438 * 12 11 9 15 15 C 1.54912 * 101.57968 * 277.13822 * 14 12 11 16 16 N 1.47426 * 104.83261 * 322.99067 * 15 14 12 17 17 C 1.36941 * 125.64875 * 203.86480 * 16 15 14 18 18 H 1.08001 * 120.00063 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99930 * 0.02562 * 17 16 15 20 20 N 1.31617 * 120.00219 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00125 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46763 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47257 * 119.99870 * 21 19 17 24 24 H 1.48497 * 109.47230 * 239.99856 * 21 19 17 25 25 C 1.47024 * 108.70449 * 24.12870 * 16 15 14 26 26 C 1.54633 * 101.76813 * 334.58269 * 7 6 5 27 27 C 1.34422 * 124.34764 * 359.97339 * 5 2 1 28 28 O 1.21284 * 124.94072 * 359.54038 * 27 5 2 29 29 H 1.08991 * 109.47801 * 300.00451 * 1 2 3 30 30 H 1.09004 * 109.47058 * 60.00626 * 1 2 3 31 31 H 1.08998 * 109.47147 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46992 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46675 * 299.99609 * 3 2 1 34 34 H 1.08990 * 109.47103 * 59.99720 * 3 2 1 35 35 H 1.08998 * 109.47038 * 300.00408 * 4 2 1 36 36 H 1.09004 * 109.47138 * 59.99640 * 4 2 1 37 37 H 1.08997 * 109.47411 * 179.97438 * 4 2 1 38 38 H 1.08997 * 110.24632 * 78.03505 * 6 5 2 39 39 H 1.08997 * 110.24122 * 316.03694 * 6 5 2 40 40 H 0.97006 * 120.00250 * 359.97438 * 11 9 7 41 41 H 1.08997 * 109.46866 * 296.85554 * 13 12 11 42 42 H 1.08995 * 109.47083 * 56.85685 * 13 12 11 43 43 H 1.09007 * 109.46846 * 176.85423 * 13 12 11 44 44 H 1.08997 * 111.00368 * 159.07015 * 14 12 11 45 45 H 1.08989 * 111.00661 * 35.21144 * 14 12 11 46 46 H 1.09002 * 110.36496 * 204.15483 * 15 14 12 47 47 H 1.08995 * 110.46379 * 81.87851 * 15 14 12 48 48 H 0.97004 * 120.00482 * 180.02562 * 20 19 17 49 49 H 1.08995 * 109.88316 * 118.35549 * 25 16 15 50 50 H 1.09002 * 109.88101 * 239.52444 * 25 16 15 51 51 H 1.08995 * 110.48557 * 143.47879 * 26 7 6 52 52 H 1.08998 * 110.48284 * 266.11953 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 3.4367 -0.8794 1.5223 7 6 3.4692 -1.9977 2.5875 8 1 4.2483 -1.8107 3.3266 9 6 3.6520 -3.3489 1.9456 10 8 3.8623 -3.4306 0.7540 11 7 3.5815 -4.4664 2.6956 12 6 3.7586 -5.7799 2.0715 13 6 2.7458 -5.9815 0.9425 14 6 3.6366 -6.9103 3.1273 15 6 5.0642 -6.9295 3.7286 16 7 5.9584 -6.6666 2.5863 17 6 7.2769 -7.0275 2.5053 18 1 7.8491 -6.7874 1.6214 19 6 7.8778 -7.7021 3.5592 20 7 7.1803 -7.9952 4.6362 21 14 9.6766 -8.1938 3.4490 22 1 10.2318 -7.7508 2.1449 23 1 10.4340 -7.5512 4.5529 24 1 9.7940 -9.6698 3.5619 25 6 5.2018 -5.9471 1.5512 26 6 2.0641 -1.8713 3.2205 27 6 1.2248 -1.2325 2.1361 28 8 0.0122 -1.2121 2.1177 29 1 -0.3634 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6768 -1.7489 -1.2492 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7208 -1.2493 38 1 3.8561 0.0409 1.9287 39 1 3.9899 -1.1873 0.6351 40 1 3.4135 -4.4010 3.6488 41 1 1.7365 -5.9713 1.3538 42 1 2.8494 -5.1777 0.2137 43 1 2.9302 -6.9393 0.4558 44 1 3.3993 -7.8630 2.6540 45 1 2.8964 -6.6578 3.8864 46 1 5.2800 -7.9060 4.1623 47 1 5.1711 -6.1488 4.4816 48 1 7.6003 -8.4662 5.3728 49 1 5.6491 -4.9683 1.3781 50 1 5.1980 -6.5240 0.6264 51 1 1.6715 -2.8551 3.4774 52 1 2.0991 -1.2314 4.1022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046366759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:13 Heat of formation + Delta-G solvation = -38.551930 kcal Electronic energy + Delta-G solvation = -31479.887482 eV Core-core repulsion = 27480.283627 eV Total energy + Delta-G solvation = -3999.603855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.24807 -39.68290 -37.51570 -36.82501 -35.57561 -34.06389 -32.09719 -30.71474 -29.70275 -28.69477 -28.09301 -27.54462 -27.21495 -25.71146 -24.12940 -23.26408 -21.68415 -20.50167 -20.17144 -19.08083 -18.71566 -17.67714 -16.87249 -16.69546 -15.80408 -15.66368 -15.26506 -14.82606 -14.71264 -14.28189 -14.17852 -13.98067 -13.81395 -13.69257 -13.57983 -13.09576 -13.00107 -12.74437 -12.41602 -12.29386 -12.25770 -12.16252 -12.04585 -11.80218 -11.76564 -11.69669 -11.63710 -11.56760 -11.31141 -11.16719 -10.95815 -10.89555 -10.43257 -10.36526 -10.08062 -9.97804 -9.68637 -9.53242 -9.28461 -8.80475 -8.70717 -8.65204 -6.83933 -5.67829 -3.08207 2.47186 2.75036 2.79793 3.29366 3.38277 3.44419 3.46644 4.11467 4.14366 4.47213 4.57185 4.62267 4.69451 4.76126 4.84398 5.06560 5.22232 5.23426 5.30842 5.36521 5.37058 5.42696 5.46380 5.49458 5.55184 5.55658 5.58968 5.64291 5.66352 5.72379 5.73676 5.88335 6.02682 6.13934 6.15818 6.16332 6.20767 6.33480 6.44067 6.49577 6.52410 6.68218 6.78312 7.03069 7.09147 7.42107 7.61318 7.74905 7.82559 8.08267 8.32493 8.43390 9.20710 9.81465 10.46061 11.36605 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.002804 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.424384 B = 9981.917575 C =10295.556638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.174 3.826 3 C -0.156 4.156 4 C -0.156 4.156 5 N -0.603 5.603 6 C 0.115 3.885 7 C -0.127 4.127 8 H 0.125 0.875 9 C 0.523 3.477 10 O -0.530 6.530 11 N -0.704 5.704 12 C 0.160 3.840 13 C -0.151 4.151 14 C -0.147 4.147 15 C 0.153 3.847 16 N -0.604 5.604 17 C -0.217 4.217 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.924 5.924 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.139 3.861 26 C -0.148 4.148 27 C 0.519 3.481 28 O -0.531 6.531 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.398 0.602 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.011 0.989 48 H 0.251 0.749 49 H 0.030 0.970 50 H 0.030 0.970 51 H 0.105 0.895 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 16.272 -4.633 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.091 3.909 3 C -0.214 4.214 4 C -0.214 4.214 5 N -0.337 5.337 6 C -0.008 4.008 7 C -0.149 4.149 8 H 0.143 0.857 9 C 0.308 3.692 10 O -0.407 6.407 11 N -0.354 5.354 12 C 0.074 3.926 13 C -0.210 4.210 14 C -0.186 4.186 15 C 0.028 3.972 16 N -0.330 5.330 17 C -0.346 4.346 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.573 5.573 21 Si 0.744 3.256 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.013 3.987 26 C -0.188 4.188 27 C 0.307 3.693 28 O -0.408 6.408 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.232 0.768 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.125 0.875 47 H 0.029 0.971 48 H 0.062 0.938 49 H 0.048 0.952 50 H 0.047 0.953 51 H 0.124 0.876 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.188 16.142 -5.478 20.955 hybrid contribution 1.111 -0.199 0.606 1.281 sum -11.078 15.943 -4.872 20.016 Atomic orbital electron populations 1.22085 0.92265 1.03559 1.01773 1.20458 0.95140 0.91383 0.83918 1.22183 1.01598 0.95173 1.02459 1.22153 1.01940 1.01105 0.96160 1.48344 1.07088 1.56042 1.22247 1.21961 0.82607 0.96769 0.99473 1.22349 0.99263 0.94029 0.99249 0.85686 1.20005 0.76659 0.85347 0.87210 1.90652 1.48307 1.86784 1.14914 1.45941 1.72186 1.05625 1.11649 1.21359 0.95946 0.81622 0.93657 1.22060 0.97426 1.02847 0.98655 1.23358 1.01075 0.96869 0.97276 1.21920 0.83399 1.02893 0.88950 1.44519 1.07932 1.65573 1.15005 1.19133 0.84662 1.29564 1.01231 0.90518 1.24761 0.98449 1.01260 0.96305 1.69788 1.34401 1.46310 1.06815 0.86005 0.84352 0.77962 0.77249 1.20544 1.21819 1.21752 1.21576 0.89108 0.95689 0.92361 1.22404 0.93646 1.04102 0.98664 1.20730 0.87419 0.77944 0.83202 1.90722 1.12678 1.59799 1.77626 0.91389 0.92546 0.91310 0.92118 0.91329 0.92283 0.91877 0.91648 0.91860 0.90488 0.88173 0.76764 0.93273 0.90592 0.91843 0.90540 0.91872 0.87531 0.97138 0.93842 0.95218 0.95262 0.87625 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 6.99 37.15 0.26 -1.23 16 2 C 0.17 1.73 1.20 -131.82 -0.16 1.57 16 3 C -0.16 -1.20 8.54 37.16 0.32 -0.88 16 4 C -0.16 -1.54 8.49 37.16 0.32 -1.22 16 5 N -0.60 -6.51 2.76 -157.58 -0.43 -6.95 16 6 C 0.12 1.10 5.98 -3.12 -0.02 1.09 16 7 C -0.13 -1.25 3.54 -90.14 -0.32 -1.57 16 8 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 9 C 0.52 7.37 6.38 -10.99 -0.07 7.30 16 10 O -0.53 -9.04 12.48 5.56 0.07 -8.98 16 11 N -0.70 -10.20 4.87 -45.91 -0.22 -10.42 16 12 C 0.16 2.75 0.81 -129.98 -0.10 2.64 16 13 C -0.15 -2.39 8.44 37.16 0.31 -2.08 16 14 C -0.15 -2.59 6.07 -24.58 -0.15 -2.74 16 15 C 0.15 3.52 5.86 -2.53 -0.01 3.51 16 16 N -0.60 -15.23 3.39 -170.07 -0.58 -15.81 16 17 C -0.22 -6.04 10.27 -15.06 -0.15 -6.20 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 20 N -0.92 -26.32 10.09 55.49 0.56 -25.76 16 21 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.14 3.00 6.20 -3.06 -0.02 2.98 16 26 C -0.15 -1.38 6.39 -26.74 -0.17 -1.55 16 27 C 0.52 6.40 7.84 -10.86 -0.09 6.31 16 28 O -0.53 -8.12 13.99 5.55 0.08 -8.05 16 29 H 0.07 0.80 7.06 -51.93 -0.37 0.44 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.89 7.08 -51.93 -0.37 0.52 16 32 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.63 7.21 -51.93 -0.37 0.26 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.10 1.12 5.92 -51.93 -0.31 0.81 16 40 H 0.40 4.93 8.31 -40.82 -0.34 4.59 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.29 5.97 -51.93 -0.31 0.98 16 43 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 44 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 45 H 0.06 0.94 8.07 -51.94 -0.42 0.52 16 46 H 0.11 2.80 5.89 -51.93 -0.31 2.49 16 47 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.03 0.69 6.90 -51.93 -0.36 0.33 16 50 H 0.03 0.65 7.78 -51.93 -0.40 0.25 16 51 H 0.11 1.00 7.51 -51.93 -0.39 0.61 16 52 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 396.22 15.07 5.97 5.97 Total: -1.00 -32.98 396.22 -8.70 -41.68 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -8.96 Total: 3.91 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -0.15 Total: 7.48 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.68 Total: -58.94 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.15 Total: -17.02 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.98 -8.70 -41.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046366759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.131 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds