Wall clock time and date at job start Tue Mar 31 2020 20:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 110.45815 * 2 1 4 4 O 1.21277 * 119.99874 * 119.67929 * 3 2 1 5 5 N 1.34776 * 120.00485 * 299.67930 * 3 2 1 6 6 C 1.47014 * 125.65096 * 184.29099 * 5 3 2 7 7 C 1.54337 * 107.26677 * 178.84598 * 6 5 3 8 8 C 1.55157 * 103.02170 * 338.14313 * 7 6 5 9 9 H 1.09004 * 111.00163 * 277.22964 * 8 7 6 10 10 N 1.46893 * 111.04112 * 153.39417 * 8 7 6 11 11 C 1.46894 * 111.00122 * 192.08379 * 10 8 7 12 12 C 1.53247 * 109.34093 * 172.74601 * 11 10 8 13 13 N 1.47077 * 108.52097 * 53.83136 * 12 11 10 14 14 C 1.36931 * 120.88171 * 128.83769 * 13 12 11 15 15 H 1.07998 * 120.00072 * 209.41055 * 14 13 12 16 16 C 1.38812 * 120.00120 * 29.41214 * 14 13 12 17 17 N 1.31619 * 119.99811 * 11.69047 * 16 14 13 18 18 Si 1.86800 * 120.00042 * 191.69308 * 16 14 13 19 19 H 1.48492 * 109.47127 * 89.99980 * 18 16 14 20 20 H 1.48501 * 109.47036 * 210.00120 * 18 16 14 21 21 H 1.48497 * 109.47238 * 329.99801 * 18 16 14 22 22 C 1.47087 * 118.23679 * 308.81695 * 13 12 11 23 23 C 1.46903 * 111.00098 * 67.78180 * 10 8 7 24 24 C 1.47428 * 125.64533 * 4.59097 * 5 3 2 25 25 C 1.54799 * 110.62321 * 122.65805 * 2 1 3 26 26 C 1.54482 * 103.92212 * 118.69953 * 25 2 1 27 27 O 1.44425 * 104.90528 * 24.00064 * 26 25 2 28 28 C 1.44427 * 105.27333 * 319.43741 * 27 26 25 29 29 H 1.09004 * 109.47492 * 189.37636 * 1 2 3 30 30 H 1.08999 * 109.46595 * 309.37674 * 1 2 3 31 31 H 1.09004 * 109.47196 * 69.37201 * 1 2 3 32 32 H 1.09000 * 109.88278 * 298.38693 * 6 5 3 33 33 H 1.09003 * 109.88515 * 59.55851 * 6 5 3 34 34 H 1.08996 * 110.85420 * 219.66868 * 7 6 5 35 35 H 1.09002 * 110.51448 * 96.44985 * 7 6 5 36 36 H 1.09000 * 109.49758 * 292.70692 * 11 10 8 37 37 H 1.09002 * 109.49614 * 52.78628 * 11 10 8 38 38 H 1.09002 * 109.62735 * 294.11989 * 12 11 10 39 39 H 1.09004 * 109.62834 * 173.54096 * 12 11 10 40 40 H 0.96997 * 119.99505 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.62341 * 291.47388 * 22 13 12 42 42 H 1.08995 * 109.62478 * 170.89584 * 22 13 12 43 43 H 1.08995 * 109.49369 * 307.21553 * 23 10 8 44 44 H 1.08998 * 109.48930 * 67.29514 * 23 10 8 45 45 H 1.09000 * 110.36891 * 322.93542 * 24 5 3 46 46 H 1.08999 * 110.36314 * 85.14706 * 24 5 3 47 47 H 1.08993 * 110.60082 * 0.08905 * 25 2 1 48 48 H 1.08997 * 110.55343 * 237.28089 * 25 2 1 49 49 H 1.09009 * 110.37166 * 265.11792 * 26 25 2 50 50 H 1.09003 * 110.37309 * 142.89356 * 26 25 2 51 51 H 1.09004 * 110.36806 * 159.33920 * 28 27 26 52 52 H 1.09005 * 110.36873 * 281.67401 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4119 0.0000 4 8 2.7559 1.7983 0.9125 5 7 1.7508 2.2454 -1.0140 6 6 2.2661 3.6116 -1.1854 7 6 1.6676 4.1659 -2.4956 8 6 1.2882 2.8808 -3.2778 9 1 2.1526 2.4730 -3.8019 10 7 0.1834 3.1382 -4.2111 11 6 -0.3648 1.8812 -4.7374 12 6 -1.6229 2.1811 -5.5595 13 7 -1.2867 3.1875 -6.5779 14 6 -1.5969 2.9844 -7.8960 15 1 -0.9844 3.4245 -8.6690 16 6 -2.6988 2.2129 -8.2388 17 7 -3.5737 1.8690 -7.3176 18 14 -2.9400 1.6627 -10.0076 19 1 -2.2707 0.3534 -10.2143 20 1 -4.3915 1.5268 -10.2902 21 1 -2.3495 2.6707 -10.9244 22 6 -0.6087 4.4182 -6.1428 23 6 0.6093 4.0302 -5.2979 24 6 0.8393 1.9402 -2.1318 25 6 2.0752 -0.7818 1.2197 26 6 2.8801 -1.9400 0.5894 27 8 3.2416 -1.4679 -0.7268 28 6 2.0712 -0.7796 -1.2189 29 1 -0.3634 -1.0139 0.1674 30 1 -0.3632 0.6520 0.7944 31 1 -0.3634 0.3621 -0.9618 32 1 1.9587 4.2320 -0.3436 33 1 3.3536 3.5915 -1.2563 34 1 2.4080 4.7474 -3.0448 35 1 0.7818 4.7660 -2.2870 36 1 0.3778 1.3979 -5.3723 37 1 -0.6206 1.2207 -3.9089 38 1 -2.4039 2.5687 -4.9054 39 1 -1.9684 1.2689 -6.0461 40 1 -4.3434 1.3296 -7.5571 41 1 -1.2923 5.0209 -5.5448 42 1 -0.2837 4.9850 -7.0152 43 1 1.0601 4.9283 -4.8757 44 1 1.3385 3.5170 -5.9249 45 1 0.9442 0.8980 -2.4333 46 1 -0.1920 2.1504 -1.8484 47 1 1.2555 -1.1707 1.8236 48 1 2.7263 -0.1473 1.8210 49 1 2.2622 -2.8349 0.5149 50 1 3.7743 -2.1450 1.1779 51 1 2.3441 -0.0913 -2.0189 52 1 1.3293 -1.4966 -1.5707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052103804.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:04 Heat of formation + Delta-G solvation = -35.574703 kcal Electronic energy + Delta-G solvation = -31318.095878 eV Core-core repulsion = 27318.621125 eV Total energy + Delta-G solvation = -3999.474753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.13412 -39.30479 -38.21428 -36.79970 -34.28753 -33.98181 -31.66373 -31.04505 -30.01827 -29.55012 -28.51992 -26.76428 -26.06360 -24.50960 -23.19496 -22.95570 -22.51229 -21.14365 -20.46640 -19.24915 -19.13364 -17.32381 -16.98024 -16.77712 -16.22262 -15.95877 -15.68032 -15.00226 -14.93567 -14.57156 -14.31801 -14.01115 -13.93285 -13.66626 -13.50550 -13.36729 -13.33665 -13.15066 -12.96284 -12.71828 -12.58625 -12.30622 -11.89990 -11.72832 -11.67198 -11.48134 -11.38487 -11.18186 -11.02615 -11.00190 -10.84954 -10.78809 -10.48183 -10.35639 -10.25782 -10.07246 -9.81687 -9.77513 -9.63790 -8.81235 -8.55954 -7.97188 -6.67493 -5.82127 -3.27843 2.41730 2.71525 3.34375 3.41451 3.42416 3.65067 3.94917 4.06409 4.30626 4.38296 4.45793 4.52269 4.60972 4.74392 4.84851 4.92183 4.99837 5.10460 5.17487 5.18911 5.27462 5.33088 5.36516 5.40319 5.42708 5.44658 5.49495 5.59675 5.64105 5.70560 5.75498 5.78728 5.84275 5.86770 5.88170 6.04668 6.09403 6.12967 6.19237 6.26510 6.44932 6.46059 6.62598 6.87487 7.17533 7.31760 7.48015 7.56846 7.64966 7.76375 7.96022 8.41282 9.18030 9.79499 10.38719 11.26347 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.002873 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.085467 B = 9743.333179 C =10796.171266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.547 3.453 4 O -0.538 6.538 5 N -0.614 5.614 6 C 0.110 3.890 7 C -0.122 4.122 8 C 0.068 3.932 9 H 0.052 0.948 10 N -0.520 5.520 11 C 0.031 3.969 12 C 0.179 3.821 13 N -0.595 5.595 14 C -0.252 4.252 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.905 5.905 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.149 3.851 23 C 0.045 3.955 24 C 0.101 3.899 25 C -0.143 4.143 26 C 0.045 3.955 27 O -0.370 6.370 28 C 0.054 3.946 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.026 0.974 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.090 0.910 40 H 0.254 0.746 41 H 0.026 0.974 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.028 0.972 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.099 0.901 49 H 0.061 0.939 50 H 0.093 0.907 51 H 0.096 0.904 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.827 -3.426 15.258 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C 0.335 3.665 4 O -0.415 6.415 5 N -0.348 5.348 6 C -0.012 4.012 7 C -0.160 4.160 8 C -0.042 4.042 9 H 0.070 0.930 10 N -0.245 5.245 11 C -0.098 4.098 12 C 0.053 3.947 13 N -0.319 5.319 14 C -0.382 4.382 15 H 0.082 0.918 16 C -0.195 4.195 17 N -0.550 5.550 18 Si 0.735 3.265 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.022 3.978 23 C -0.084 4.084 24 C -0.022 4.022 25 C -0.180 4.180 26 C -0.032 4.032 27 O -0.289 6.289 28 C -0.023 4.023 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.117 0.883 49 H 0.080 0.920 50 H 0.111 0.889 51 H 0.114 0.886 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.889 -3.147 15.904 18.990 hybrid contribution 0.194 -0.676 -1.292 1.471 sum 10.082 -3.823 14.612 18.160 Atomic orbital electron populations 1.21989 0.90972 1.03392 1.03768 1.22169 0.98210 0.93065 0.98160 1.19827 0.79849 0.86244 0.80547 1.90658 1.38815 1.76902 1.35157 1.48361 1.46633 1.15275 1.24534 1.21952 0.98760 0.82413 0.98103 1.22708 1.01780 0.97479 0.94069 1.22754 0.93603 0.94878 0.92958 0.93028 1.62048 1.29428 1.15728 1.17329 1.22992 0.99736 0.89422 0.97632 1.20871 0.90170 0.94723 0.88891 1.44083 1.68720 1.14735 1.04336 1.19192 1.06361 1.29988 0.82665 0.91757 1.25117 0.95139 1.01806 0.97460 1.69970 1.12368 1.40470 1.32160 0.86257 0.76992 0.78719 0.84579 1.21470 1.21672 1.20467 1.20983 0.91672 0.89823 0.95294 1.22631 0.98571 0.95405 0.91795 1.22639 0.94386 0.99399 0.85771 1.23121 1.00991 0.97093 0.96835 1.23451 0.99722 0.96018 0.83980 1.89169 1.34845 1.73634 1.31209 1.23657 0.88522 0.95020 0.95130 0.90903 0.91544 0.90764 0.91225 0.91553 0.90159 0.89215 0.95535 0.92148 0.95528 0.89211 0.93584 0.95609 0.92594 0.91827 0.95336 0.90453 0.89475 0.89730 0.88298 0.92044 0.88875 0.88555 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 7.94 37.16 0.30 -0.92 16 2 C -0.11 -1.16 0.69 -153.94 -0.11 -1.26 16 3 C 0.55 7.16 6.57 -10.99 -0.07 7.09 16 4 O -0.54 -8.72 15.62 5.56 0.09 -8.64 16 5 N -0.61 -7.34 3.23 -170.52 -0.55 -7.89 16 6 C 0.11 1.23 6.87 -3.06 -0.02 1.21 16 7 C -0.12 -1.31 5.62 -24.89 -0.14 -1.45 16 8 C 0.07 0.85 2.72 -65.57 -0.18 0.67 16 9 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 10 N -0.52 -8.11 4.53 -223.79 -1.01 -9.12 16 11 C 0.03 0.54 5.43 -3.70 -0.02 0.52 16 12 C 0.18 4.06 5.37 -3.60 -0.02 4.04 16 13 N -0.60 -14.40 3.03 -172.01 -0.52 -14.92 16 14 C -0.25 -6.72 9.63 -15.06 -0.15 -6.87 16 15 H 0.06 1.69 7.86 -52.49 -0.41 1.28 16 16 C 0.00 0.09 5.05 -17.43 -0.09 0.00 16 17 N -0.91 -25.42 11.03 55.49 0.61 -24.81 16 18 Si 0.90 21.18 29.57 -169.99 -5.03 16.15 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.15 2.99 6.69 -3.60 -0.02 2.97 16 23 C 0.05 0.74 5.52 -3.70 -0.02 0.72 16 24 C 0.10 1.14 2.94 -2.53 -0.01 1.13 16 25 C -0.14 -1.34 6.32 -25.01 -0.16 -1.50 16 26 C 0.05 0.41 7.62 37.94 0.29 0.70 16 27 O -0.37 -4.50 11.65 -35.23 -0.41 -4.91 16 28 C 0.05 0.56 5.66 37.93 0.21 0.77 16 29 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 31 H 0.07 0.63 5.31 -51.93 -0.28 0.35 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.77 7.97 -51.93 -0.41 0.36 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.91 6.60 -51.93 -0.34 0.56 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 2.28 6.16 -51.93 -0.32 1.96 16 40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 1.09 7.95 -51.93 -0.41 0.68 16 43 H 0.06 0.88 7.11 -51.93 -0.37 0.51 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.81 4.52 -51.93 -0.23 0.58 16 46 H 0.09 1.02 7.51 -51.93 -0.39 0.63 16 47 H 0.08 0.62 7.72 -51.93 -0.40 0.22 16 48 H 0.10 1.13 6.51 -51.93 -0.34 0.79 16 49 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 50 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.10 1.05 5.97 -51.93 -0.31 0.74 16 52 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -31.25 385.63 -10.05 -41.30 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.83 Total: -0.80 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -0.20 Total: 7.82 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -1.47 Total: -56.74 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.32 Total: -13.55 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.25 -10.05 -41.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052103804.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.722 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds