Wall clock time and date at job start Tue Mar 31 2020 19:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 112.84958 * 2 1 4 4 C 1.53775 * 113.61535 * 131.19686 * 2 1 3 5 5 C 1.53785 * 87.08138 * 139.97989 * 4 2 1 6 6 C 1.53786 * 113.61485 * 228.80560 * 2 1 3 7 7 H 1.08999 * 113.61670 * 105.46890 * 6 2 1 8 8 C 1.50701 * 113.61326 * 334.56977 * 6 2 1 9 9 O 1.21282 * 119.99394 * 274.84031 * 8 6 2 10 10 N 1.34768 * 120.00381 * 94.84005 * 8 6 2 11 11 C 1.47749 * 121.65332 * 3.94525 * 10 8 6 12 12 C 1.53603 * 108.47993 * 87.79950 * 11 10 8 13 13 C 1.50706 * 109.49474 * 55.02106 * 12 11 10 14 14 O 1.21277 * 120.24138 * 65.67821 * 13 12 11 15 15 N 1.35518 * 119.52074 * 245.66171 * 13 12 11 16 16 C 1.47109 * 118.10695 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.17170 * 259.43341 * 16 15 13 18 18 N 1.47773 * 108.82090 * 57.75386 * 17 16 15 19 19 C 1.36936 * 121.64673 * 83.02643 * 18 17 16 20 20 H 1.07997 * 119.99862 * 325.15558 * 19 18 17 21 21 C 1.38815 * 119.99745 * 145.15811 * 19 18 17 22 22 N 1.31616 * 120.00061 * 3.52916 * 21 19 18 23 23 Si 1.86803 * 119.99698 * 183.52860 * 21 19 18 24 24 H 1.48494 * 109.47385 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47088 * 120.00093 * 23 21 19 26 26 H 1.48507 * 109.46801 * 239.99725 * 23 21 19 27 27 C 1.47734 * 116.70288 * 263.00412 * 18 17 16 28 28 C 1.47768 * 121.65403 * 184.22835 * 10 8 6 29 29 H 1.09011 * 109.47176 * 64.87703 * 1 2 3 30 30 H 1.09001 * 109.47424 * 184.87387 * 1 2 3 31 31 H 1.08999 * 109.47358 * 304.87774 * 1 2 3 32 32 H 1.09003 * 109.47456 * 50.33068 * 3 2 1 33 33 H 1.09002 * 109.47271 * 170.33515 * 3 2 1 34 34 H 1.09000 * 109.47330 * 290.33655 * 3 2 1 35 35 H 1.08998 * 113.61700 * 254.52822 * 4 2 1 36 36 H 1.09006 * 113.61335 * 25.35141 * 4 2 1 37 37 H 1.08997 * 113.61362 * 89.12141 * 5 4 2 38 38 H 1.09001 * 113.61479 * 219.93099 * 5 4 2 39 39 H 1.08997 * 109.58394 * 207.43020 * 11 10 8 40 40 H 1.08995 * 109.58034 * 327.84469 * 11 10 8 41 41 H 1.09004 * 109.49720 * 294.98919 * 12 11 10 42 42 H 1.08998 * 109.40754 * 175.00308 * 12 11 10 43 43 H 0.96996 * 120.94512 * 359.94396 * 15 13 12 44 44 H 1.08999 * 109.52331 * 139.52766 * 16 15 13 45 45 H 1.08997 * 109.52213 * 19.34558 * 16 15 13 46 46 H 1.09000 * 109.58097 * 297.94954 * 17 16 15 47 47 H 1.09006 * 109.68641 * 177.61667 * 17 16 15 48 48 H 0.96996 * 119.99782 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.58578 * 14.87494 * 27 18 17 50 50 H 1.09003 * 109.69178 * 254.54103 * 27 18 17 51 51 H 1.08997 * 109.58531 * 69.84063 * 28 10 8 52 52 H 1.09011 * 109.58467 * 190.12156 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9280 1.0602 5 6 3.1923 -1.3136 0.0012 6 6 2.1460 -0.9280 -1.0603 7 1 2.5650 -0.3970 -1.9150 8 6 1.2452 -2.0675 -1.4619 9 8 1.2327 -3.0896 -0.8090 10 7 0.4536 -1.9508 -2.5463 11 6 0.5018 -0.7579 -3.4167 12 6 1.5812 -0.9792 -4.4868 13 6 1.3034 -2.2645 -5.2231 14 8 0.3105 -2.3719 -5.9112 15 7 2.1713 -3.2992 -5.1111 16 6 1.8694 -4.5393 -5.8427 17 6 1.2640 -5.5585 -4.8755 18 7 0.0525 -4.9740 -4.2638 19 6 -1.1598 -5.0043 -4.8999 20 1 -1.2078 -4.9144 -5.9750 21 6 -2.3269 -5.1507 -4.1627 22 7 -2.2744 -5.1905 -2.8482 23 14 -3.9720 -5.2913 -5.0365 24 1 -3.7606 -5.2182 -6.5045 25 1 -4.6066 -6.5886 -4.6913 26 1 -4.8566 -4.1780 -4.6082 27 6 0.2137 -4.3556 -2.9318 28 6 -0.5099 -3.0069 -2.9203 29 1 -0.3634 0.4363 -0.9305 30 1 -0.3634 -1.0239 0.0873 31 1 -0.3634 0.5876 0.8430 32 1 1.6606 1.9995 0.7910 33 1 3.1987 1.3514 0.1725 34 1 1.9360 1.8834 -0.9636 35 1 2.5650 -0.3970 1.9149 36 1 1.4939 -1.7515 1.3516 37 1 4.0710 -0.6687 0.0006 38 1 3.4454 -2.3738 0.0032 39 1 -0.4663 -0.6170 -3.8974 40 1 0.7466 0.1204 -2.8195 41 1 2.5597 -1.0379 -4.0099 42 1 1.5693 -0.1472 -5.1908 43 1 2.9690 -3.2242 -4.5645 44 1 2.7874 -4.9431 -6.2696 45 1 1.1580 -4.3273 -6.6408 46 1 1.9878 -5.7974 -4.0963 47 1 0.9979 -6.4660 -5.4176 48 1 -3.0899 -5.2932 -2.3332 49 1 1.2730 -4.2018 -2.7262 50 1 -0.2153 -5.0068 -2.1702 51 1 -1.3223 -3.0342 -2.1942 52 1 -0.9128 -2.7995 -3.9118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070987002.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:30 Heat of formation + Delta-G solvation = -14.443258 kcal Electronic energy + Delta-G solvation = -33435.948749 eV Core-core repulsion = 29437.390324 eV Total energy + Delta-G solvation = -3998.558425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.80795 -39.20090 -37.58317 -35.74206 -35.27375 -33.68213 -31.31110 -30.70981 -30.32677 -29.30584 -27.59754 -27.05105 -25.83695 -24.27664 -23.55741 -22.60900 -21.86317 -20.17334 -19.72561 -19.42413 -17.51853 -17.05669 -16.46934 -16.06009 -15.68406 -15.45142 -15.07366 -14.70305 -14.58631 -14.30181 -14.05520 -13.62794 -13.31537 -13.26203 -13.14853 -13.07795 -12.93998 -12.63980 -12.39984 -12.37178 -12.05834 -11.96062 -11.64756 -11.46321 -11.40440 -11.17744 -11.11944 -11.01166 -10.81312 -10.77054 -10.44829 -10.16723 -10.09020 -10.01820 -9.89569 -9.83208 -9.57824 -9.10426 -8.93430 -8.58559 -8.26726 -7.92985 -6.39155 -5.56456 -3.13779 3.08301 3.28662 3.45480 3.53087 3.54421 3.57670 3.89490 4.43680 4.60001 4.60381 4.64185 4.83022 5.00299 5.08003 5.14902 5.26459 5.38309 5.44699 5.52641 5.54130 5.54927 5.61074 5.63316 5.70659 5.76746 5.79885 5.80708 5.89720 5.96564 6.02736 6.09589 6.12715 6.18811 6.26393 6.28147 6.37299 6.49328 6.61895 6.71495 6.75722 6.83882 7.08397 7.15908 7.19502 7.67966 7.91086 8.03686 8.13890 8.25291 8.57274 8.81636 8.95843 9.38790 9.94959 10.60554 11.42785 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013557 B = 0.004871 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.896817 B = 5747.399151 C = 6458.448251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 C -0.126 4.126 4 C -0.128 4.128 5 C -0.120 4.120 6 C -0.133 4.133 7 H 0.088 0.912 8 C 0.533 3.467 9 O -0.530 6.530 10 N -0.613 5.613 11 C 0.118 3.882 12 C -0.159 4.159 13 C 0.522 3.478 14 O -0.519 6.519 15 N -0.722 5.722 16 C 0.088 3.912 17 C 0.128 3.872 18 N -0.591 5.591 19 C -0.226 4.226 20 H 0.062 0.938 21 C 0.007 3.993 22 N -0.901 5.901 23 Si 0.894 3.106 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.293 1.293 27 C 0.178 3.822 28 C 0.120 3.880 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.390 0.610 44 H 0.052 0.948 45 H 0.084 0.916 46 H 0.038 0.962 47 H 0.051 0.949 48 H 0.250 0.750 49 H 0.023 0.977 50 H 0.061 0.939 51 H 0.060 0.940 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.861 13.275 3.218 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 C -0.183 4.183 4 C -0.166 4.166 5 C -0.158 4.158 6 C -0.155 4.155 7 H 0.107 0.893 8 C 0.320 3.680 9 O -0.406 6.406 10 N -0.347 5.347 11 C -0.006 4.006 12 C -0.201 4.201 13 C 0.307 3.693 14 O -0.393 6.393 15 N -0.373 5.373 16 C -0.038 4.038 17 C 0.000 4.000 18 N -0.314 5.314 19 C -0.356 4.356 20 H 0.080 0.920 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.724 3.276 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.220 1.220 27 C 0.053 3.947 28 C 0.000 4.000 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.116 0.884 43 H 0.223 0.777 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.057 0.943 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.042 0.958 50 H 0.079 0.921 51 H 0.079 0.921 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.942 12.588 3.187 17.641 hybrid contribution -0.590 0.140 -0.247 0.655 sum 11.352 12.728 2.940 17.306 Atomic orbital electron populations 1.21813 0.93809 1.02644 1.01568 1.21706 0.95544 0.94152 0.95711 1.21587 1.00496 0.94250 1.01947 1.23024 0.98306 0.99125 0.96112 1.22710 0.95776 1.02383 0.94949 1.22699 0.97875 0.96666 0.98210 0.89336 1.19641 0.80456 0.87739 0.80118 1.90708 1.66859 1.30186 1.52870 1.49138 1.39786 1.20278 1.25505 1.21798 0.99300 0.88600 0.90942 1.22316 1.00674 0.97589 0.99527 1.20252 0.82997 0.84713 0.81336 1.90734 1.25970 1.82509 1.40108 1.46015 1.25774 1.14398 1.51158 1.22308 0.99126 0.85631 0.96779 1.21439 0.89818 0.93933 0.94823 1.44491 1.03877 1.64754 1.18286 1.18934 0.82896 1.42473 0.91258 0.91996 1.25316 0.98048 1.00319 0.95432 1.69981 1.26354 1.54314 1.03907 0.86327 0.84779 0.77135 0.79334 1.20372 1.21854 1.22014 1.21256 0.94103 0.91576 0.87756 1.22638 0.89423 0.86347 1.01624 0.92473 0.91881 0.92596 0.92179 0.92341 0.92322 0.91839 0.89215 0.90136 0.90310 0.89418 0.90317 0.90840 0.88421 0.77720 0.93004 0.89719 0.94341 0.93116 0.93967 0.95836 0.92102 0.92123 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.49 37.16 0.32 -1.43 16 2 C -0.07 -0.77 1.34 -153.70 -0.21 -0.98 16 3 C -0.13 -1.03 9.07 37.16 0.34 -0.69 16 4 C -0.13 -1.51 6.82 -25.92 -0.18 -1.69 16 5 C -0.12 -1.39 7.08 -25.83 -0.18 -1.57 16 6 C -0.13 -1.64 2.70 -90.87 -0.25 -1.88 16 7 H 0.09 0.92 6.37 -51.93 -0.33 0.59 16 8 C 0.53 9.04 4.67 -10.99 -0.05 8.99 16 9 O -0.53 -11.19 13.56 5.56 0.08 -11.11 16 10 N -0.61 -10.69 2.42 -171.25 -0.41 -11.11 16 11 C 0.12 1.64 5.35 -3.04 -0.02 1.62 16 12 C -0.16 -2.03 6.13 -27.57 -0.17 -2.20 16 13 C 0.52 9.06 4.75 -10.65 -0.05 9.01 16 14 O -0.52 -11.41 15.08 5.56 0.08 -11.33 16 15 N -0.72 -11.54 4.70 -59.69 -0.28 -11.82 16 16 C 0.09 1.53 6.58 -3.71 -0.02 1.50 16 17 C 0.13 2.61 6.09 -3.35 -0.02 2.59 16 18 N -0.59 -14.54 2.28 -171.17 -0.39 -14.93 16 19 C -0.23 -6.17 8.23 -15.06 -0.12 -6.29 16 20 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 21 C 0.01 0.19 4.96 -17.43 -0.09 0.11 16 22 N -0.90 -26.07 9.54 55.49 0.53 -25.54 16 23 Si 0.89 22.44 29.56 -169.99 -5.02 17.42 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 C 0.18 4.35 3.58 -3.34 -0.01 4.34 16 28 C 0.12 2.75 3.93 -3.32 -0.01 2.73 16 29 H 0.06 0.68 7.43 -51.92 -0.39 0.29 16 30 H 0.06 0.99 7.06 -51.93 -0.37 0.62 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.43 7.34 -51.93 -0.38 0.05 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.09 1.30 7.56 -51.93 -0.39 0.91 16 37 H 0.08 0.73 7.64 -51.93 -0.40 0.33 16 38 H 0.08 1.06 7.64 -51.93 -0.40 0.67 16 39 H 0.09 1.34 7.80 -51.93 -0.41 0.94 16 40 H 0.08 0.85 6.12 -51.93 -0.32 0.53 16 41 H 0.07 0.77 7.21 -51.93 -0.37 0.40 16 42 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.39 5.25 8.71 -40.82 -0.36 4.89 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.71 7.01 -51.93 -0.36 1.35 16 46 H 0.04 0.75 7.76 -51.93 -0.40 0.35 16 47 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 48 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.02 0.55 5.78 -51.93 -0.30 0.25 16 50 H 0.06 1.78 6.69 -51.93 -0.35 1.44 16 51 H 0.06 1.58 7.44 -51.93 -0.39 1.19 16 52 H 0.10 2.51 4.77 -51.92 -0.25 2.26 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -32.81 381.63 -9.05 -41.86 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -8.65 Total: 6.65 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: -0.73 Total: 14.16 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -0.56 Total: -63.40 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.16 Total: -22.44 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.81 -9.05 -41.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070987002.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.413 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds