Wall clock time and date at job start Tue Mar 31 2020 20:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.73965 * 2 1 4 4 O 1.21280 * 120.00018 * 111.85041 * 3 2 1 5 5 N 1.34774 * 119.99947 * 291.84316 * 3 2 1 6 6 C 1.46962 * 120.36642 * 184.37987 * 5 3 2 7 7 C 1.51800 * 109.40184 * 291.90448 * 6 5 3 8 8 C 1.53799 * 109.05577 * 287.19097 * 7 6 5 9 9 C 1.52445 * 109.40449 * 77.79055 * 8 7 6 10 10 C 1.53945 * 110.73095 * 246.27033 * 9 8 7 11 11 C 1.52876 * 109.73318 * 44.36208 * 10 9 8 12 12 H 1.08999 * 109.50228 * 312.91993 * 11 10 9 13 13 N 1.46494 * 109.49077 * 192.86928 * 11 10 9 14 14 C 1.36939 * 119.99982 * 85.08698 * 13 11 10 15 15 H 1.08002 * 119.99949 * 0.02562 * 14 13 11 16 16 C 1.38810 * 120.00290 * 180.02562 * 14 13 11 17 17 N 1.31622 * 120.00027 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00169 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47266 * 89.99874 * 18 16 14 20 20 H 1.48494 * 109.47070 * 209.99994 * 18 16 14 21 21 H 1.48500 * 109.46916 * 329.99980 * 18 16 14 22 22 C 1.45338 * 120.36391 * 4.66336 * 5 3 2 23 23 C 1.53344 * 109.60457 * 120.40842 * 2 1 3 24 24 C 1.53068 * 108.42530 * 52.22250 * 23 2 1 25 25 C 1.50178 * 109.89310 * 48.90061 * 24 23 2 26 26 O 1.21281 * 118.24528 * 162.43906 * 25 24 23 27 27 N 1.33351 * 123.50620 * 342.42625 * 25 24 23 28 28 C 1.45757 * 124.10907 * 2.49267 * 27 25 24 29 29 H 1.09001 * 109.46960 * 281.75102 * 1 2 3 30 30 H 1.09005 * 109.46906 * 41.74481 * 1 2 3 31 31 H 1.09000 * 109.47527 * 161.74475 * 1 2 3 32 32 H 1.09003 * 109.52996 * 51.53528 * 6 5 3 33 33 H 1.09004 * 109.53244 * 171.75350 * 6 5 3 34 34 H 1.08997 * 109.61202 * 167.29394 * 7 6 5 35 35 H 1.09001 * 109.53729 * 47.03979 * 7 6 5 36 36 H 1.08996 * 109.48647 * 317.80910 * 8 7 6 37 37 H 1.09003 * 109.48897 * 197.76976 * 8 7 6 38 38 H 1.09000 * 109.22529 * 125.94197 * 9 8 7 39 39 H 1.09005 * 109.19030 * 6.56822 * 9 8 7 40 40 H 1.09000 * 109.43198 * 284.28448 * 10 9 8 41 41 H 1.09006 * 109.43090 * 164.44161 * 10 9 8 42 42 H 0.97003 * 120.00267 * 265.09197 * 13 11 10 43 43 H 0.96998 * 119.99831 * 180.02562 * 17 16 14 44 44 H 1.08997 * 109.67204 * 256.38350 * 22 5 3 45 45 H 1.09000 * 109.67681 * 16.88649 * 22 5 3 46 46 H 1.09002 * 109.67301 * 292.48748 * 23 2 1 47 47 H 1.09004 * 109.68044 * 171.95958 * 23 2 1 48 48 H 1.09001 * 109.40160 * 288.77128 * 24 23 2 49 49 H 1.09003 * 109.40460 * 169.03347 * 24 23 2 50 50 H 0.97003 * 117.94463 * 182.22290 * 27 25 24 51 51 H 1.08996 * 109.29611 * 100.96042 * 28 27 25 52 52 H 1.08993 * 109.30257 * 220.34315 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0389 1.4184 0.0000 4 8 2.6117 1.8572 0.9749 5 7 1.8578 2.1994 -1.0834 6 6 2.4337 3.5506 -1.1299 7 6 1.7274 4.4349 -0.1182 8 6 0.3154 4.7596 -0.6343 9 6 -0.5961 3.5595 -0.4048 10 6 -1.0391 2.9473 -1.7461 11 6 0.1603 2.8462 -2.6885 12 1 0.7068 3.7893 -2.6845 13 7 -0.3079 2.5584 -4.0464 14 6 -0.6977 3.5825 -4.8677 15 1 -0.6596 4.6024 -4.5144 16 6 -1.1420 3.3098 -6.1542 17 7 -1.1880 2.0670 -6.5850 18 14 -1.6730 4.7069 -7.2748 19 1 -0.5026 5.1928 -8.0489 20 1 -2.7183 4.2207 -8.2107 21 1 -2.2203 5.8179 -6.4553 22 6 1.0855 1.7168 -2.2161 23 6 2.0445 -0.7312 1.2458 24 6 1.3687 -2.1029 1.3153 25 6 1.4707 -2.7908 -0.0157 26 8 1.2858 -3.9887 -0.0584 27 7 1.7533 -2.1549 -1.1533 28 6 2.0488 -0.7303 -1.2416 29 1 -0.3633 0.2093 1.0061 30 1 -0.3633 0.7668 -0.6843 31 1 -0.3634 -0.9759 -0.3219 32 1 3.4948 3.5032 -0.8848 33 1 2.3078 3.9663 -2.1297 34 1 2.2886 5.3599 0.0141 35 1 1.6553 3.9120 0.8355 36 1 0.3604 4.9834 -1.7001 37 1 -0.0783 5.6229 -0.0977 38 1 -1.4768 3.8790 0.1523 39 1 -0.0593 2.8071 0.1732 40 1 -1.8032 3.5794 -2.1984 41 1 -1.4489 1.9522 -1.5728 42 1 -0.3419 1.6424 -4.3639 43 1 -1.4981 1.8765 -7.4841 44 1 1.7588 1.4315 -3.0244 45 1 0.4895 0.8557 -1.9137 46 1 1.7978 -0.1549 2.1376 47 1 3.1250 -0.8574 1.1773 48 1 0.3184 -1.9762 1.5780 49 1 1.8599 -2.7104 2.0755 50 1 1.7668 -2.6736 -1.9728 51 1 3.1267 -0.5904 -1.3222 52 1 1.5676 -0.3169 -2.1279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088367182.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:36 Heat of formation + Delta-G solvation = -43.507985 kcal Electronic energy + Delta-G solvation = -32604.707835 eV Core-core repulsion = 28604.889069 eV Total energy + Delta-G solvation = -3999.818766 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.64065 -39.94944 -37.92570 -36.83489 -34.71663 -34.25504 -33.55338 -32.41178 -31.13717 -29.77467 -27.51087 -27.24287 -26.20593 -24.93232 -23.98932 -23.07446 -22.06074 -21.70063 -20.03542 -19.12401 -18.32404 -17.55033 -17.08698 -16.83181 -16.26823 -15.92638 -15.82666 -15.50778 -14.97848 -14.78240 -14.54906 -14.31906 -14.03469 -13.77148 -13.58981 -13.51394 -13.29537 -13.06499 -12.90724 -12.51378 -12.35579 -12.31641 -12.04819 -11.86626 -11.78781 -11.32527 -11.21937 -11.16564 -11.02752 -10.89576 -10.82369 -10.74469 -10.47072 -10.30957 -10.21074 -10.06005 -9.87372 -9.78590 -9.46978 -9.20188 -8.99336 -8.43145 -7.10173 -5.89227 -3.19162 2.49172 2.53381 2.93591 3.14534 3.35533 3.41757 3.43006 4.16886 4.19997 4.41617 4.45124 4.49304 4.72991 4.87958 4.96402 4.98495 5.10219 5.11271 5.16440 5.28133 5.31447 5.32026 5.40462 5.42077 5.49536 5.55145 5.61510 5.64104 5.69212 5.73283 5.76240 5.79817 5.85690 5.89936 6.00193 6.06916 6.12860 6.19129 6.24049 6.41055 6.48413 6.54580 6.59038 6.63822 6.84402 6.94043 7.13662 7.46363 7.58679 8.05459 8.12761 8.28548 9.40313 9.94009 10.28224 11.32972 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.004018 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.883978 B = 6967.140542 C = 8498.851668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.093 4.093 3 C 0.530 3.470 4 O -0.538 6.538 5 N -0.592 5.592 6 C 0.115 3.885 7 C -0.137 4.137 8 C -0.127 4.127 9 C -0.119 4.119 10 C -0.137 4.137 11 C 0.156 3.844 12 H 0.070 0.930 13 N -0.722 5.722 14 C -0.241 4.241 15 H 0.070 0.930 16 C -0.008 4.008 17 N -0.931 5.931 18 Si 0.905 3.095 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.072 3.928 23 C -0.098 4.098 24 C -0.136 4.136 25 C 0.520 3.480 26 O -0.561 6.561 27 N -0.714 5.714 28 C 0.104 3.896 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.383 0.617 43 H 0.256 0.744 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.103 0.897 49 H 0.103 0.897 50 H 0.404 0.596 51 H 0.072 0.928 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.379 -1.868 14.522 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.097 4.097 3 C 0.317 3.683 4 O -0.415 6.415 5 N -0.324 5.324 6 C -0.007 4.007 7 C -0.176 4.176 8 C -0.164 4.164 9 C -0.157 4.157 10 C -0.177 4.177 11 C 0.046 3.954 12 H 0.087 0.913 13 N -0.363 5.363 14 C -0.372 4.372 15 H 0.088 0.912 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.736 3.264 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.051 4.051 23 C -0.136 4.136 24 C -0.176 4.176 25 C 0.307 3.693 26 O -0.440 6.440 27 N -0.366 5.366 28 C -0.020 4.020 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.216 0.784 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.114 0.886 46 H 0.108 0.892 47 H 0.093 0.907 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.240 0.760 51 H 0.090 0.910 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.548 -1.952 15.106 16.580 hybrid contribution -0.465 0.381 -1.286 1.420 sum 6.083 -1.570 13.820 15.181 Atomic orbital electron populations 1.22328 0.91610 1.04166 1.04053 1.21074 0.98294 0.93122 0.97172 1.20018 0.79204 0.86581 0.82491 1.90667 1.42840 1.74824 1.33138 1.47723 1.52179 1.15463 1.17018 1.21466 0.96950 0.81421 1.00843 1.21960 0.96351 0.99295 0.99954 1.21823 0.94687 0.97753 1.02130 1.21747 0.98489 0.97449 0.98015 1.22503 1.00414 1.00142 0.94688 1.20933 0.92351 0.96052 0.86090 0.91280 1.42315 1.77974 1.07335 1.08707 1.19156 1.36188 0.88260 0.93595 0.91165 1.24719 1.01991 0.96232 0.97546 1.69643 1.53008 1.17046 1.18138 0.86231 0.78048 0.81343 0.80797 1.21670 1.21758 1.20731 1.22669 0.94904 0.99420 0.88088 1.21545 1.00641 0.94065 0.97324 1.21701 1.04200 0.96826 0.94839 1.20197 0.75439 0.87252 0.86384 1.90762 1.50868 1.15236 1.87155 1.45403 1.71045 1.09899 1.10205 1.21952 1.01229 0.80317 0.98543 0.91168 0.89323 0.91162 0.91459 0.88974 0.91521 0.90418 0.90506 0.92774 0.93382 0.92454 0.91367 0.93010 0.78351 0.93400 0.90926 0.88551 0.89238 0.90686 0.87861 0.87907 0.76044 0.91013 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 6.66 37.15 0.25 -1.39 16 2 C -0.09 -0.94 0.49 -155.43 -0.08 -1.02 16 3 C 0.53 6.48 4.98 -10.99 -0.05 6.42 16 4 O -0.54 -7.88 14.43 5.56 0.08 -7.80 16 5 N -0.59 -7.12 1.69 -174.67 -0.29 -7.41 16 6 C 0.12 1.38 5.15 -4.40 -0.02 1.36 16 7 C -0.14 -1.63 5.54 -26.92 -0.15 -1.77 16 8 C -0.13 -1.60 5.49 -26.60 -0.15 -1.74 16 9 C -0.12 -1.56 5.34 -26.52 -0.14 -1.70 16 10 C -0.14 -2.11 4.91 -26.30 -0.13 -2.24 16 11 C 0.16 2.53 2.29 -67.76 -0.16 2.38 16 12 H 0.07 1.16 3.29 -51.93 -0.17 0.99 16 13 N -0.72 -15.59 5.12 -53.26 -0.27 -15.86 16 14 C -0.24 -6.02 9.90 -15.06 -0.15 -6.17 16 15 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 17 N -0.93 -26.13 13.06 55.49 0.72 -25.40 16 18 Si 0.90 21.10 29.55 -169.99 -5.02 16.08 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.07 0.94 3.25 -4.43 -0.01 0.93 16 23 C -0.10 -0.92 4.36 -26.52 -0.12 -1.04 16 24 C -0.14 -1.25 5.43 -28.10 -0.15 -1.40 16 25 C 0.52 6.16 6.92 -11.87 -0.08 6.08 16 26 O -0.56 -8.88 17.78 5.56 0.10 -8.79 16 27 N -0.71 -7.24 5.15 -61.29 -0.32 -7.55 16 28 C 0.10 0.99 5.31 -4.39 -0.02 0.97 16 29 H 0.07 0.65 8.01 -51.93 -0.42 0.23 16 30 H 0.09 0.99 2.53 -51.93 -0.13 0.85 16 31 H 0.07 0.69 6.57 -51.93 -0.34 0.35 16 32 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 33 H 0.09 1.14 6.06 -51.93 -0.31 0.82 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.04 6.04 -51.93 -0.31 0.72 16 36 H 0.08 1.08 5.47 -51.93 -0.28 0.79 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.75 4.58 -51.93 -0.24 0.51 16 40 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 41 H 0.05 0.77 6.34 -51.93 -0.33 0.45 16 42 H 0.38 8.83 7.80 -40.82 -0.32 8.51 16 43 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.07 0.97 7.77 -51.93 -0.40 0.57 16 45 H 0.10 1.16 2.75 -51.93 -0.14 1.02 16 46 H 0.09 0.86 7.77 -51.93 -0.40 0.46 16 47 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16 48 H 0.10 0.85 7.32 -51.93 -0.38 0.47 16 49 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.40 3.86 8.80 -40.82 -0.36 3.50 16 51 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 52 H 0.10 0.98 4.55 -51.93 -0.24 0.74 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -30.52 366.47 -8.45 -38.96 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -7.71 Total: 12.92 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.26 Total: -0.66 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.16 Total: -56.23 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.18 Total: -16.59 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.52 -8.45 -38.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088367182.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.546 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds