Wall clock time and date at job start Tue Mar 31 2020 20:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.26279 * 2 1 4 4 C 1.50887 * 109.36712 * 240.31413 * 2 1 3 5 5 C 1.52562 * 109.35991 * 331.69616 * 4 2 1 6 6 H 1.09002 * 108.38868 * 36.15345 * 5 4 2 7 7 N 1.46503 * 108.51425 * 153.73307 * 5 4 2 8 8 C 1.34776 * 120.00103 * 209.76704 * 7 5 4 9 9 O 1.21276 * 120.00179 * 0.02562 * 8 7 5 10 10 C 1.50695 * 119.99667 * 179.72362 * 8 7 5 11 11 H 1.09004 * 109.67322 * 300.77384 * 10 8 7 12 12 C 1.53352 * 109.67296 * 180.27650 * 10 8 7 13 13 C 1.52920 * 108.67309 * 172.73372 * 12 10 8 14 14 N 1.45756 * 110.48946 * 50.75323 * 13 12 10 15 15 C 1.33357 * 124.10536 * 340.94512 * 14 13 12 16 16 O 1.21274 * 118.24657 * 182.22382 * 15 14 13 17 17 C 1.50179 * 123.50617 * 2.17928 * 15 14 13 18 18 C 1.47092 * 114.32680 * 274.98700 * 5 4 2 19 19 C 1.54864 * 110.32377 * 62.80390 * 18 5 4 20 20 N 1.44583 * 109.59810 * 288.73319 * 19 18 5 21 21 C 1.36937 * 118.64011 * 270.70535 * 20 19 18 22 22 H 1.08001 * 120.00376 * 30.44803 * 21 20 19 23 23 C 1.38817 * 119.99580 * 210.44661 * 21 20 19 24 24 N 1.31617 * 119.99867 * 10.90920 * 23 21 20 25 25 Si 1.86800 * 119.99911 * 190.91339 * 23 21 20 26 26 H 1.48497 * 109.47187 * 89.99697 * 25 23 21 27 27 H 1.48495 * 109.46982 * 209.99802 * 25 23 21 28 28 H 1.48502 * 109.47021 * 329.99583 * 25 23 21 29 29 C 1.47600 * 122.71141 * 90.72981 * 20 19 18 30 30 H 1.08994 * 109.46958 * 300.45148 * 1 2 3 31 31 H 1.09001 * 109.46814 * 60.45464 * 1 2 3 32 32 H 1.09003 * 109.47078 * 180.44775 * 1 2 3 33 33 H 1.08995 * 109.47405 * 179.67852 * 3 2 1 34 34 H 1.09002 * 109.47396 * 299.68010 * 3 2 1 35 35 H 1.09001 * 109.46935 * 59.67768 * 3 2 1 36 36 H 1.09000 * 109.48601 * 211.72590 * 4 2 1 37 37 H 1.08999 * 109.48329 * 91.66233 * 4 2 1 38 38 H 0.97003 * 119.99467 * 29.76152 * 7 5 4 39 39 H 1.08997 * 109.59932 * 292.48957 * 12 10 8 40 40 H 1.09002 * 109.60228 * 52.97849 * 12 10 8 41 41 H 1.09002 * 109.29612 * 171.06220 * 13 12 10 42 42 H 1.08997 * 109.30235 * 290.44251 * 13 12 10 43 43 H 0.97000 * 117.94639 * 160.92297 * 14 13 12 44 44 H 1.09002 * 109.40831 * 222.31212 * 17 15 14 45 45 H 1.08998 * 109.38086 * 102.58345 * 17 15 14 46 46 H 1.09002 * 109.32956 * 183.06099 * 18 5 4 47 47 H 1.08995 * 109.32752 * 302.71391 * 18 5 4 48 48 H 1.09001 * 109.45016 * 48.77251 * 19 18 5 49 49 H 1.09000 * 109.44710 * 168.69607 * 19 18 5 50 50 H 0.97003 * 119.99738 * 180.02562 * 24 23 21 51 51 H 1.08996 * 108.95205 * 78.54867 * 29 20 19 52 52 H 1.09003 * 108.94408 * 197.27274 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0348 1.4443 0.0000 4 6 2.0304 -0.7050 -1.2367 5 6 1.0026 -1.7423 -1.6783 6 1 0.0067 -1.3428 -1.4866 7 7 1.1469 -1.9555 -3.1205 8 6 0.0767 -2.3080 -3.8601 9 8 -1.0059 -2.4482 -3.3318 10 6 0.2240 -2.5212 -5.3446 11 1 0.5878 -1.6063 -5.8124 12 6 -1.1323 -2.9056 -5.9480 13 6 -0.9990 -2.9385 -7.4710 14 7 0.1466 -3.7487 -7.8655 15 6 1.1545 -4.0650 -7.0516 16 8 2.0755 -4.7120 -7.5031 17 6 1.2106 -3.6619 -5.6060 18 6 1.1231 -3.0418 -0.9997 19 6 0.8753 -2.8798 0.5204 20 7 1.9928 -2.1879 1.1229 21 6 3.0503 -2.9257 1.5839 22 1 3.3056 -3.8603 1.1067 23 6 3.7941 -2.4722 2.6647 24 7 3.3631 -1.4547 3.3797 25 14 5.4069 -3.3060 3.1042 26 1 6.5203 -2.6442 2.3780 27 1 5.6371 -3.1985 4.5672 28 1 5.3453 -4.7383 2.7167 29 6 2.0405 -0.7192 1.2619 30 1 -0.3633 0.5208 0.8859 31 1 -0.3633 0.5068 -0.8941 32 1 -0.3633 -1.0277 0.0080 33 1 3.1247 1.4483 0.0058 34 1 1.6743 1.9552 -0.8928 35 1 1.6648 1.9584 0.8871 36 1 2.9756 -1.2007 -1.0153 37 1 2.1791 0.0224 -2.0347 38 1 2.0128 -1.8429 -3.5431 39 1 -1.4280 -3.8901 -5.5854 40 1 -1.8820 -2.1677 -5.6623 41 1 -1.9057 -3.3622 -7.9029 42 1 -0.8670 -1.9225 -7.8431 43 1 0.1777 -4.0787 -8.7771 44 1 2.2199 -3.3311 -5.3610 45 1 0.9497 -4.5166 -4.9818 46 1 0.3895 -3.7340 -1.4130 47 1 2.1250 -3.4403 -1.1589 48 1 -0.0366 -2.3046 0.6802 49 1 0.7684 -3.8635 0.9775 50 1 3.8831 -1.1376 4.1347 51 1 1.4244 -0.4238 2.1112 52 1 3.0702 -0.4147 1.4491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089355270.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:55 Heat of formation + Delta-G solvation = -51.261677 kcal Electronic energy + Delta-G solvation = -31329.180868 eV Core-core repulsion = 27329.025877 eV Total energy + Delta-G solvation = -4000.154991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.95171 -39.93784 -38.57953 -36.54439 -34.85844 -34.23242 -33.56991 -31.94000 -30.23712 -29.75226 -27.50463 -26.87666 -25.65033 -25.44702 -24.12105 -23.45007 -21.81591 -20.41410 -19.66834 -19.52799 -18.15030 -17.65692 -16.98399 -16.71553 -16.44803 -15.98568 -15.61751 -15.23613 -15.00695 -14.64527 -14.21596 -14.15180 -13.84715 -13.74174 -13.65527 -13.40479 -12.91712 -12.65961 -12.61881 -12.30258 -12.18573 -12.06191 -11.79135 -11.53063 -11.46170 -11.41115 -11.39160 -11.07629 -10.81482 -10.75325 -10.47317 -10.40860 -10.31850 -10.20148 -9.99776 -9.80218 -9.50527 -9.46299 -9.43500 -9.26931 -8.78415 -8.40351 -6.58872 -5.76899 -3.25674 2.32344 2.63558 2.92813 3.21828 3.36667 3.44258 3.45101 4.14626 4.28504 4.36178 4.40646 4.49546 4.86956 4.88137 4.92612 5.11945 5.19017 5.29629 5.34157 5.38703 5.42702 5.52003 5.58473 5.60711 5.69210 5.80201 5.87591 5.92675 6.07094 6.22016 6.24187 6.25960 6.32514 6.35734 6.39464 6.41278 6.61638 6.65075 6.76631 6.78089 6.86966 6.91178 6.94786 6.99300 7.16380 7.45448 7.63408 7.75297 7.83553 7.87210 8.29743 8.50832 9.26671 9.91673 10.38616 11.29643 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015235 B = 0.003025 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.490272 B = 9255.471482 C =10284.470630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 C -0.130 4.130 4 C -0.101 4.101 5 C 0.140 3.860 6 H 0.097 0.903 7 N -0.724 5.724 8 C 0.516 3.484 9 O -0.539 6.539 10 C -0.113 4.113 11 H 0.103 0.897 12 C -0.117 4.117 13 C 0.109 3.891 14 N -0.721 5.721 15 C 0.525 3.475 16 O -0.555 6.555 17 C -0.127 4.127 18 C -0.154 4.154 19 C 0.154 3.846 20 N -0.588 5.588 21 C -0.259 4.259 22 H 0.063 0.937 23 C 0.008 3.992 24 N -0.904 5.904 25 Si 0.900 3.100 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.279 1.279 29 C 0.193 3.807 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.394 0.606 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.399 0.601 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.051 0.949 47 H 0.060 0.940 48 H 0.044 0.956 49 H 0.047 0.953 50 H 0.253 0.747 51 H 0.027 0.973 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 2.831 -19.359 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.092 4.092 3 C -0.188 4.188 4 C -0.139 4.139 5 C 0.038 3.962 6 H 0.115 0.885 7 N -0.373 5.373 8 C 0.301 3.699 9 O -0.416 6.416 10 C -0.134 4.134 11 H 0.121 0.879 12 C -0.155 4.155 13 C -0.015 4.015 14 N -0.374 5.374 15 C 0.311 3.689 16 O -0.433 6.433 17 C -0.167 4.167 18 C -0.196 4.196 19 C 0.025 3.975 20 N -0.309 5.309 21 C -0.389 4.389 22 H 0.080 0.920 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.730 3.270 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.205 1.205 29 C 0.068 3.932 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.227 0.773 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.235 0.765 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.045 0.955 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.639 2.582 -18.766 20.820 hybrid contribution 1.347 -0.388 -0.299 1.433 sum -7.293 2.194 -19.066 20.530 Atomic orbital electron populations 1.22379 0.96103 1.02411 1.00149 1.20938 0.94981 0.95243 0.97996 1.21788 1.00832 0.95659 1.00538 1.21290 0.99544 0.96413 0.96646 1.20414 1.02090 0.96535 0.77135 0.88533 1.46548 1.11136 1.69508 1.10124 1.20251 0.84575 0.76919 0.88190 1.90704 1.26437 1.51078 1.73400 1.21477 0.97551 1.00080 0.94337 0.87900 1.21720 0.96459 1.04527 0.92824 1.21459 0.88494 0.95508 0.96034 1.45504 1.22365 1.54143 1.15380 1.20030 0.81296 0.78924 0.88601 1.90785 1.36118 1.40431 1.76003 1.21654 1.01731 0.99887 0.93425 1.21868 1.01521 0.95928 1.00239 1.20801 0.90706 0.96469 0.89508 1.43601 1.17186 1.01253 1.68822 1.19181 1.06083 1.04725 1.08892 0.91960 1.25135 0.99730 0.98509 0.95702 1.70025 1.37744 1.27890 1.19101 0.86328 0.84010 0.79300 0.77324 1.21510 1.21776 1.20463 1.21074 1.00711 0.81600 0.89844 0.93264 0.94090 0.90698 0.92877 0.93889 0.92882 0.90347 0.93071 0.77258 0.90094 0.88546 0.90040 0.91353 0.76531 0.87429 0.87425 0.93059 0.92110 0.93809 0.93472 0.93696 0.95509 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 6.76 37.16 0.25 -2.26 16 2 C -0.09 -1.55 0.75 -155.07 -0.12 -1.67 16 3 C -0.13 -2.01 8.15 37.15 0.30 -1.71 16 4 C -0.10 -1.61 4.39 -28.02 -0.12 -1.73 16 5 C 0.14 2.17 1.79 -70.99 -0.13 2.04 16 6 H 0.10 1.62 3.95 -51.93 -0.20 1.42 16 7 N -0.72 -8.88 4.80 -56.82 -0.27 -9.15 16 8 C 0.52 6.26 6.97 -10.99 -0.08 6.18 16 9 O -0.54 -8.52 15.41 5.56 0.09 -8.43 16 10 C -0.11 -0.93 2.60 -91.56 -0.24 -1.17 16 11 H 0.10 0.68 8.13 -51.93 -0.42 0.26 16 12 C -0.12 -0.84 4.70 -26.59 -0.13 -0.97 16 13 C 0.11 0.54 7.17 -4.48 -0.03 0.51 16 14 N -0.72 -5.14 5.45 -61.39 -0.33 -5.47 16 15 C 0.52 5.38 7.71 -11.87 -0.09 5.29 16 16 O -0.56 -8.09 17.78 5.56 0.10 -7.99 16 17 C -0.13 -1.13 5.22 -28.10 -0.15 -1.28 16 18 C -0.15 -2.71 5.20 -28.58 -0.15 -2.86 16 19 C 0.15 3.14 5.58 -4.08 -0.02 3.12 16 20 N -0.59 -13.79 2.26 -172.08 -0.39 -14.18 16 21 C -0.26 -6.79 9.41 -15.06 -0.14 -6.94 16 22 H 0.06 1.64 7.85 -52.49 -0.41 1.22 16 23 C 0.01 0.22 4.97 -17.43 -0.09 0.13 16 24 N -0.90 -25.39 11.00 55.49 0.61 -24.78 16 25 Si 0.90 21.33 29.57 -169.99 -5.03 16.31 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 C 0.19 4.31 3.53 -2.94 -0.01 4.30 16 30 H 0.05 0.80 8.13 -51.93 -0.42 0.37 16 31 H 0.04 0.60 7.90 -51.93 -0.41 0.19 16 32 H 0.07 1.30 3.16 -51.93 -0.16 1.14 16 33 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 34 H 0.04 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.45 7.48 -51.93 -0.39 1.06 16 37 H 0.05 0.71 7.63 -51.93 -0.40 0.32 16 38 H 0.39 3.94 8.40 -40.82 -0.34 3.60 16 39 H 0.08 0.68 8.12 -51.93 -0.42 0.25 16 40 H 0.10 0.71 7.90 -51.93 -0.41 0.30 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.40 2.43 8.80 -40.82 -0.36 2.07 16 44 H 0.11 0.89 7.99 -51.93 -0.41 0.48 16 45 H 0.11 1.03 8.09 -51.93 -0.42 0.61 16 46 H 0.05 0.89 7.95 -51.93 -0.41 0.48 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 48 H 0.04 0.87 5.22 -51.93 -0.27 0.60 16 49 H 0.05 1.00 7.99 -51.93 -0.41 0.59 16 50 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 51 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 52 H 0.07 1.84 6.31 -51.93 -0.33 1.51 16 LS Contribution 388.39 15.07 5.85 5.85 Total: -1.00 -32.32 388.39 -9.00 -41.32 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.69 Total: 5.52 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -0.93 Total: 1.00 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.39 Total: -53.58 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.18 Total: -16.42 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.32 -9.00 -41.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089355270.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.945 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds