Wall clock time and date at job start Tue Mar 31 2020 20:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.36201 * 2 1 4 4 C 1.54852 * 109.35414 * 240.27280 * 2 1 3 5 5 C 1.50012 * 110.87975 * 200.80063 * 4 2 1 6 6 H 1.09009 * 110.39882 * 338.86972 * 5 4 2 7 7 N 1.46499 * 110.33501 * 216.80318 * 5 4 2 8 8 C 1.34777 * 119.99784 * 159.11217 * 7 5 4 9 9 O 1.21278 * 120.00431 * 0.02562 * 8 7 5 10 10 C 1.50696 * 119.99728 * 179.97438 * 8 7 5 11 11 H 1.09004 * 109.67441 * 59.50457 * 10 8 7 12 12 C 1.53347 * 109.67694 * 180.02562 * 10 8 7 13 13 C 1.52917 * 108.67982 * 187.26786 * 12 10 8 14 14 N 1.45753 * 110.48435 * 309.24524 * 13 12 10 15 15 C 1.33354 * 124.10936 * 19.09548 * 14 13 12 16 16 O 1.21280 * 118.24839 * 177.78166 * 15 14 13 17 17 C 1.50179 * 123.50495 * 357.73406 * 15 14 13 18 18 C 1.52528 * 105.29474 * 97.85222 * 5 4 2 19 19 C 1.46234 * 114.27581 * 270.62561 * 18 5 4 20 20 N 1.50179 * 107.53009 * 58.40795 * 19 18 5 21 21 C 1.36929 * 120.53111 * 109.56708 * 20 19 18 22 22 H 1.08004 * 119.99985 * 156.69941 * 21 20 19 23 23 C 1.38807 * 120.00424 * 336.69312 * 21 20 19 24 24 N 1.31621 * 120.00092 * 340.43107 * 23 21 20 25 25 Si 1.86800 * 120.00342 * 160.42429 * 23 21 20 26 26 H 1.48505 * 109.46807 * 59.99913 * 25 23 21 27 27 H 1.48497 * 109.47534 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47374 * 300.00620 * 25 23 21 29 29 C 1.43435 * 118.93177 * 289.58543 * 20 19 18 30 30 H 1.09003 * 109.46765 * 59.99194 * 1 2 3 31 31 H 1.08994 * 109.47588 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46461 * 299.99880 * 1 2 3 33 33 H 1.08996 * 109.46993 * 60.00539 * 3 2 1 34 34 H 1.09002 * 109.47012 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47144 * 300.00364 * 3 2 1 36 36 H 1.09000 * 109.20698 * 321.27661 * 4 2 1 37 37 H 1.08996 * 109.20241 * 80.58792 * 4 2 1 38 38 H 0.96995 * 119.99620 * 339.11359 * 7 5 4 39 39 H 1.09005 * 109.59892 * 307.01870 * 12 10 8 40 40 H 1.08999 * 109.60491 * 67.50266 * 12 10 8 41 41 H 1.08999 * 109.29924 * 69.55185 * 13 12 10 42 42 H 1.08997 * 109.30232 * 189.13894 * 13 12 10 43 43 H 0.97003 * 117.95043 * 199.07651 * 14 13 12 44 44 H 1.09007 * 109.41799 * 257.48215 * 17 15 14 45 45 H 1.09005 * 109.38956 * 137.74179 * 17 15 14 46 46 H 1.08995 * 108.51833 * 149.38777 * 18 5 4 47 47 H 1.09004 * 108.52064 * 31.86510 * 18 5 4 48 48 H 1.09000 * 109.85103 * 298.90115 * 19 18 5 49 49 H 1.09001 * 109.90393 * 177.94783 * 19 18 5 50 50 H 0.96993 * 120.00192 * 180.02562 * 24 23 21 51 51 H 1.09011 * 108.15890 * 329.85228 * 29 20 19 52 52 H 1.08998 * 108.16164 * 213.28511 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0373 1.4434 0.0000 4 6 2.0432 -0.7245 -1.2687 5 6 3.4566 -1.1915 -1.0829 6 1 3.9425 -0.6253 -0.2882 7 7 4.2068 -1.0541 -2.3337 8 6 5.5535 -1.0057 -2.3099 9 8 6.1444 -1.0764 -1.2531 10 6 6.3253 -0.8649 -3.5966 11 1 6.0332 0.0564 -4.1007 12 6 7.8288 -0.8353 -3.2963 13 6 8.5799 -0.5107 -4.5882 14 7 8.1444 -1.3899 -5.6660 15 6 7.0005 -2.0752 -5.6561 16 8 6.7239 -2.7446 -6.6289 17 6 6.0368 -2.0631 -4.5044 18 6 3.3465 -2.6618 -0.6922 19 6 3.2337 -2.8945 0.7471 20 7 2.0172 -2.1584 1.2305 21 6 0.9009 -2.8448 1.6276 22 1 0.1962 -2.3844 2.3044 23 6 0.6748 -4.1321 1.1604 24 7 1.2848 -4.5543 0.0731 25 14 -0.4949 -5.2657 2.0749 26 1 -1.8479 -4.6549 2.1124 27 1 -0.5615 -6.5752 1.3777 28 1 -0.0047 -5.4683 3.4620 29 6 2.0435 -0.7248 1.2690 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8901 33 1 1.6731 1.9565 0.8900 34 1 3.1273 1.4455 -0.0005 35 1 1.6729 1.9566 -0.8900 36 1 1.4044 -1.5834 -1.4744 37 1 2.0032 -0.0380 -2.1144 38 1 3.7343 -0.9979 -3.1789 39 1 8.0375 -0.0691 -2.5496 40 1 8.1464 -1.8089 -2.9233 41 1 8.3857 0.5249 -4.8673 42 1 9.6493 -0.6459 -4.4268 43 1 8.7229 -1.4823 -6.4392 44 1 6.1441 -2.9849 -3.9324 45 1 5.0181 -1.9916 -4.8856 46 1 4.2295 -3.1847 -1.0594 47 1 2.4691 -3.0852 -1.1812 48 1 4.1212 -2.5156 1.2540 49 1 3.1230 -3.9611 0.9430 50 1 1.1265 -5.4537 -0.2535 51 1 3.0711 -0.4085 1.4486 52 1 1.4400 -0.3966 2.1153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089355271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:58 Heat of formation + Delta-G solvation = -60.137817 kcal Electronic energy + Delta-G solvation = -31534.083749 eV Core-core repulsion = 27533.543860 eV Total energy + Delta-G solvation = -4000.539889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.81333 -39.62776 -38.28706 -36.44415 -34.63283 -34.38742 -33.44910 -31.41447 -30.56229 -29.81505 -27.57056 -26.68927 -25.57482 -25.46424 -23.71405 -23.09110 -21.55912 -20.26768 -19.89660 -19.43881 -18.09830 -17.60953 -16.82324 -16.68255 -16.38964 -15.74000 -15.52306 -15.07464 -14.84277 -14.49801 -14.18869 -13.96031 -13.73096 -13.63780 -13.61875 -13.31062 -13.22184 -12.53069 -12.35050 -12.11987 -11.97051 -11.87965 -11.67147 -11.44631 -11.36001 -11.31543 -11.22947 -10.87774 -10.84501 -10.69339 -10.59488 -10.37081 -10.16555 -10.00410 -9.95908 -9.69725 -9.50006 -9.39699 -9.39266 -9.21172 -8.65186 -8.30327 -6.69182 -5.77734 -3.15995 2.40239 2.76877 3.00498 3.35359 3.39210 3.45875 3.47920 4.24035 4.37777 4.45765 4.49961 4.52147 4.96245 4.97320 5.01289 5.21919 5.25211 5.38750 5.42406 5.48713 5.51460 5.53595 5.62907 5.67818 5.85762 5.90410 6.00212 6.06600 6.13832 6.27554 6.31033 6.36995 6.46336 6.47528 6.56758 6.63140 6.73322 6.79045 6.91405 6.98475 7.02059 7.04721 7.09342 7.23281 7.28804 7.59886 7.75285 7.79854 7.94726 7.97071 8.43888 8.45742 9.20498 9.88538 10.42004 11.29226 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.003216 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.590669 B = 8705.574244 C = 9656.058224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C -0.135 4.135 4 C -0.101 4.101 5 C 0.146 3.854 6 H 0.084 0.916 7 N -0.717 5.717 8 C 0.515 3.485 9 O -0.536 6.536 10 C -0.112 4.112 11 H 0.102 0.898 12 C -0.118 4.118 13 C 0.110 3.890 14 N -0.722 5.722 15 C 0.525 3.475 16 O -0.556 6.556 17 C -0.127 4.127 18 C -0.131 4.131 19 C 0.169 3.831 20 N -0.585 5.585 21 C -0.244 4.244 22 H 0.066 0.934 23 C 0.003 3.997 24 N -0.900 5.900 25 Si 0.897 3.103 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.286 1.286 29 C 0.167 3.833 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.393 0.607 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.399 0.601 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.028 0.972 47 H 0.102 0.898 48 H 0.008 0.992 49 H 0.090 0.910 50 H 0.252 0.748 51 H 0.028 0.972 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.942 11.297 -9.047 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.093 4.093 3 C -0.193 4.193 4 C -0.139 4.139 5 C 0.043 3.957 6 H 0.102 0.898 7 N -0.366 5.366 8 C 0.300 3.700 9 O -0.412 6.412 10 C -0.134 4.134 11 H 0.120 0.880 12 C -0.156 4.156 13 C -0.014 4.014 14 N -0.374 5.374 15 C 0.312 3.688 16 O -0.434 6.434 17 C -0.167 4.167 18 C -0.171 4.171 19 C 0.045 3.955 20 N -0.305 5.305 21 C -0.373 4.373 22 H 0.084 0.916 23 C -0.195 4.195 24 N -0.545 5.545 25 Si 0.727 3.273 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.213 1.213 29 C 0.037 3.963 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.227 0.773 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.234 0.766 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.046 0.954 47 H 0.120 0.880 48 H 0.026 0.974 49 H 0.108 0.892 50 H 0.062 0.938 51 H 0.046 0.954 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 11.037 10.721 -8.610 17.632 hybrid contribution -0.686 -0.550 -0.411 0.971 sum 10.350 10.172 -9.022 17.087 Atomic orbital electron populations 1.21743 0.94960 1.02738 0.99153 1.21933 0.95707 0.93616 0.98040 1.21842 1.00320 0.96608 1.00505 1.21760 0.95121 1.00374 0.96639 1.20490 0.91403 0.99156 0.84668 0.89827 1.46316 1.06033 1.73516 1.10751 1.20215 0.82743 0.76751 0.90280 1.90715 1.68956 1.49497 1.32077 1.21469 0.96761 1.00061 0.95085 0.88005 1.21720 0.92279 1.04984 0.96578 1.21465 0.99432 0.93679 0.86863 1.45509 1.21980 1.47162 1.22774 1.20049 0.81871 0.78400 0.88489 1.90781 1.75242 1.42189 1.35198 1.21662 1.00078 1.00215 0.94768 1.21322 1.02237 0.92608 1.00920 1.20088 0.85525 0.98933 0.90929 1.44247 1.11927 0.99124 1.75220 1.19121 1.00807 0.97002 1.20398 0.91631 1.24855 0.99060 0.99380 0.96192 1.69941 1.46184 1.17905 1.20454 0.86454 0.80778 0.80402 0.79626 1.21156 1.21828 1.21287 1.20498 0.97072 0.85381 0.93314 0.94837 0.90894 0.93932 0.93298 0.93418 0.93776 0.89960 0.94150 0.77299 0.88567 0.90060 0.91377 0.90088 0.76588 0.87307 0.87443 0.95371 0.87991 0.97398 0.89162 0.93767 0.95394 0.94917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.29 37.16 0.31 -1.92 16 2 C -0.09 -1.53 0.77 -152.53 -0.12 -1.64 16 3 C -0.13 -1.95 8.21 37.16 0.30 -1.65 16 4 C -0.10 -1.73 4.14 -27.24 -0.11 -1.84 16 5 C 0.15 2.54 2.10 -69.66 -0.15 2.39 16 6 H 0.08 1.62 5.28 -51.92 -0.27 1.35 16 7 N -0.72 -9.91 4.93 -55.50 -0.27 -10.18 16 8 C 0.52 7.05 6.98 -10.99 -0.08 6.97 16 9 O -0.54 -9.46 15.62 5.56 0.09 -9.37 16 10 C -0.11 -1.05 2.60 -91.56 -0.24 -1.29 16 11 H 0.10 0.76 8.13 -51.93 -0.42 0.34 16 12 C -0.12 -0.97 4.70 -26.59 -0.13 -1.10 16 13 C 0.11 0.63 7.17 -4.49 -0.03 0.60 16 14 N -0.72 -5.70 5.45 -61.39 -0.33 -6.03 16 15 C 0.52 5.85 7.71 -11.87 -0.09 5.75 16 16 O -0.56 -8.53 17.78 5.56 0.10 -8.43 16 17 C -0.13 -1.28 5.21 -28.10 -0.15 -1.43 16 18 C -0.13 -2.74 4.73 -30.19 -0.14 -2.88 16 19 C 0.17 3.93 5.24 -5.20 -0.03 3.90 16 20 N -0.58 -13.67 2.60 -175.07 -0.45 -14.12 16 21 C -0.24 -6.24 8.95 -15.06 -0.13 -6.38 16 22 H 0.07 1.69 7.89 -52.48 -0.41 1.28 16 23 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 24 N -0.90 -23.91 9.42 55.49 0.52 -23.39 16 25 Si 0.90 21.07 29.60 -169.99 -5.03 16.04 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 C 0.17 3.36 4.00 -4.66 -0.02 3.34 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 1.50 7.45 -51.93 -0.39 1.11 16 32 H 0.04 0.70 8.12 -51.93 -0.42 0.27 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.69 7.56 -51.93 -0.39 0.30 16 35 H 0.04 0.58 8.13 -51.93 -0.42 0.16 16 36 H 0.08 1.68 6.65 -51.93 -0.35 1.33 16 37 H 0.04 0.60 7.63 -51.93 -0.40 0.20 16 38 H 0.39 4.43 8.22 -40.82 -0.34 4.10 16 39 H 0.10 0.81 7.90 -51.93 -0.41 0.40 16 40 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.40 2.70 8.80 -40.82 -0.36 2.34 16 44 H 0.11 1.20 8.09 -51.92 -0.42 0.78 16 45 H 0.11 1.01 7.98 -51.93 -0.41 0.59 16 46 H 0.03 0.59 7.90 -51.93 -0.41 0.18 16 47 H 0.10 2.40 5.28 -51.93 -0.27 2.12 16 48 H 0.01 0.18 8.12 -51.93 -0.42 -0.24 16 49 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 50 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 51 H 0.03 0.55 6.69 -51.92 -0.35 0.21 16 52 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -30.88 391.14 -9.21 -40.09 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.84 Total: 6.69 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -0.88 Total: 2.82 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.54 Total: -53.72 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.19 Total: -17.81 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.88 -9.21 -40.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089355271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.051 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds