Wall clock time and date at job start Tue Mar 31 2020 20:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46819 * 124.32947 * 2 1 4 4 C 1.54480 * 105.44448 * 196.99942 * 3 2 1 5 5 H 1.08994 * 110.96631 * 92.76626 * 4 3 2 6 6 C 1.50695 * 110.97249 * 216.49675 * 4 3 2 7 7 O 1.21283 * 120.00036 * 356.90694 * 6 4 3 8 8 N 1.34775 * 120.00095 * 176.63785 * 6 4 3 9 9 C 1.46507 * 119.99843 * 180.27597 * 8 6 4 10 10 H 1.09005 * 108.44558 * 324.99423 * 9 8 6 11 11 C 1.47088 * 108.51372 * 82.68734 * 9 8 6 12 12 C 1.54870 * 110.32418 * 184.05685 * 11 9 8 13 13 N 1.44582 * 109.59328 * 288.73485 * 12 11 9 14 14 C 1.36936 * 118.63909 * 270.74342 * 13 12 11 15 15 H 1.08001 * 120.00389 * 30.43662 * 14 13 12 16 16 C 1.38816 * 120.00014 * 210.43725 * 14 13 12 17 17 N 1.31619 * 120.00016 * 10.90925 * 16 14 13 18 18 Si 1.86800 * 120.00100 * 190.90922 * 16 14 13 19 19 H 1.48505 * 109.47107 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46906 * 119.99980 * 18 16 14 21 21 H 1.48498 * 109.46894 * 240.00009 * 18 16 14 22 22 C 1.47601 * 122.71643 * 90.72770 * 13 12 11 23 23 C 1.53949 * 112.14135 * 317.86323 * 22 13 12 24 24 C 1.53003 * 109.36613 * 79.62781 * 23 22 13 25 25 C 1.52990 * 109.36794 * 199.37005 * 23 22 13 26 26 C 1.51034 * 109.96976 * 319.41911 * 23 22 13 27 27 C 1.54625 * 101.79783 * 334.63362 * 4 3 2 28 28 C 1.34417 * 124.34997 * 180.02562 * 2 1 3 29 29 O 1.21280 * 124.94624 * 359.62095 * 28 2 1 30 30 H 1.09001 * 109.47139 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47561 * 299.97792 * 1 2 3 32 32 H 1.09000 * 109.47677 * 59.98727 * 1 2 3 33 33 H 1.09000 * 110.23545 * 78.02246 * 3 2 1 34 34 H 1.08997 * 110.28687 * 316.00343 * 3 2 1 35 35 H 0.96998 * 120.00253 * 0.27008 * 8 6 4 36 36 H 1.09004 * 109.32872 * 304.31328 * 11 9 8 37 37 H 1.08998 * 109.33047 * 63.79234 * 11 9 8 38 38 H 1.09001 * 109.44498 * 48.76710 * 12 11 9 39 39 H 1.08995 * 109.44797 * 168.72137 * 12 11 9 40 40 H 0.96993 * 120.00493 * 180.02562 * 17 16 14 41 41 H 1.09003 * 108.94693 * 78.54717 * 22 13 12 42 42 H 1.08997 * 108.94926 * 197.26618 * 22 13 12 43 43 H 1.08997 * 109.47225 * 60.13401 * 24 23 22 44 44 H 1.08996 * 109.47008 * 180.13508 * 24 23 22 45 45 H 1.09007 * 109.46954 * 300.13198 * 24 23 22 46 46 H 1.08999 * 109.47178 * 59.99983 * 25 23 22 47 47 H 1.09003 * 109.47629 * 180.02562 * 25 23 22 48 48 H 1.09006 * 109.47420 * 300.00137 * 25 23 22 49 49 H 1.08997 * 109.63339 * 332.06170 * 26 23 22 50 50 H 1.08998 * 109.42781 * 211.94306 * 26 23 22 51 51 H 1.08999 * 110.48915 * 143.45970 * 27 4 3 52 52 H 1.09001 * 110.48510 * 266.10039 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2124 0.0000 4 6 3.7009 0.7491 -0.4353 5 1 3.8273 0.8459 -1.5136 6 6 4.7716 1.5122 0.3011 7 8 4.4646 2.3990 1.0695 8 7 6.0700 1.2057 0.1100 9 6 7.1105 1.9436 0.8305 10 1 6.7883 2.9796 0.9364 11 6 7.2530 1.3593 2.1728 12 6 8.2722 2.1728 3.0083 13 7 9.6069 1.9437 2.5018 14 6 10.3327 0.9009 3.0127 15 1 9.8282 0.0137 3.3661 16 6 11.7169 0.9840 3.0764 17 7 12.3182 2.1329 2.8511 18 14 12.7261 -0.5347 3.4817 19 1 11.8182 -1.6911 3.6910 20 1 13.6516 -0.8283 2.3581 21 1 13.5108 -0.2918 4.7188 22 6 10.2193 2.7872 1.4568 23 6 9.2266 3.1281 0.3307 24 6 8.3144 4.2687 0.7866 25 6 10.0017 3.5650 -0.9139 26 6 8.3885 1.9166 -0.0025 27 6 3.6898 -0.7377 -0.0108 28 6 2.2235 -1.1098 -0.0005 29 8 1.7947 -2.2442 0.0056 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5135 0.8901 32 1 -0.3634 0.5140 -0.8898 33 1 2.3303 1.6435 1.0005 34 1 1.8988 1.9393 -0.7101 35 1 6.3156 0.4966 -0.5046 36 1 6.2856 1.3689 2.6750 37 1 7.5999 0.3299 2.0832 38 1 8.0344 3.2342 2.9375 39 1 8.2207 1.8579 4.0504 40 1 13.2854 2.1910 2.8952 41 1 10.5713 3.7135 1.9109 42 1 11.0704 2.2578 1.0284 43 1 8.9177 5.1470 1.0159 44 1 7.6091 4.5099 -0.0087 45 1 7.7663 3.9617 1.6774 46 1 10.6555 2.7552 -1.2376 47 1 9.3003 3.8073 -1.7124 48 1 10.6014 4.4442 -0.6785 49 1 8.9500 1.0098 0.2223 50 1 8.1325 1.9330 -1.0618 51 1 4.2327 -1.3452 -0.7348 52 1 4.1195 -0.8535 0.9842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089401511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:16 Heat of formation + Delta-G solvation = -35.393375 kcal Electronic energy + Delta-G solvation = -31200.247581 eV Core-core repulsion = 27200.780691 eV Total energy + Delta-G solvation = -3999.466890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.07968 -39.92847 -38.51613 -36.47987 -34.89678 -34.24393 -33.35650 -31.94403 -30.08995 -28.02772 -27.62823 -27.00355 -26.87650 -25.47335 -24.26770 -23.41729 -21.75296 -20.29541 -19.87412 -19.62353 -18.19242 -17.49467 -17.07061 -16.68240 -16.18037 -15.95550 -15.49095 -15.24566 -14.96927 -14.27028 -14.17039 -14.07515 -13.83670 -13.65493 -13.44867 -13.37149 -12.90659 -12.72860 -12.66990 -12.63630 -12.52035 -12.29319 -11.86136 -11.80247 -11.65048 -11.50894 -11.44873 -11.10343 -10.82896 -10.76773 -10.44118 -10.39782 -10.31576 -10.18939 -10.01623 -9.84168 -9.59980 -9.48525 -9.29978 -9.03979 -8.82204 -8.42261 -6.60156 -5.78367 -3.27057 2.28326 2.55030 2.64383 3.18874 3.34731 3.43451 3.44774 3.92482 4.05596 4.47957 4.48348 4.56768 4.88224 4.95725 5.01534 5.13736 5.17951 5.26833 5.29046 5.36801 5.37551 5.42707 5.49832 5.58440 5.59846 5.66652 5.84782 5.90269 6.05053 6.13195 6.19362 6.22146 6.23497 6.30583 6.33494 6.39379 6.58862 6.62799 6.74070 6.74192 6.75868 6.85296 6.88214 6.97081 7.14556 7.43826 7.57409 7.73908 7.82421 7.84977 8.22495 8.49425 9.25234 9.90260 10.37140 11.28238 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015851 B = 0.002923 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.979116 B = 9577.265018 C =10590.005151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.624 5.624 3 C 0.118 3.882 4 C -0.126 4.126 5 H 0.116 0.884 6 C 0.522 3.478 7 O -0.537 6.537 8 N -0.721 5.721 9 C 0.141 3.859 10 H 0.097 0.903 11 C -0.155 4.155 12 C 0.154 3.846 13 N -0.588 5.588 14 C -0.258 4.258 15 H 0.063 0.937 16 C 0.008 3.992 17 N -0.903 5.903 18 Si 0.899 3.101 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.192 3.808 23 C -0.089 4.089 24 C -0.154 4.154 25 C -0.130 4.130 26 C -0.101 4.101 27 C -0.145 4.145 28 C 0.520 3.480 29 O -0.533 6.533 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.395 0.605 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.252 0.748 41 H 0.027 0.973 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.040 0.960 45 H 0.075 0.925 46 H 0.052 0.948 47 H 0.042 0.958 48 H 0.052 0.948 49 H 0.079 0.921 50 H 0.051 0.949 51 H 0.111 0.889 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.945 0.846 -10.395 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.359 5.359 3 C -0.005 4.005 4 C -0.147 4.147 5 H 0.134 0.866 6 C 0.306 3.694 7 O -0.414 6.414 8 N -0.370 5.370 9 C 0.039 3.961 10 H 0.114 0.886 11 C -0.196 4.196 12 C 0.025 3.975 13 N -0.309 5.309 14 C -0.388 4.388 15 H 0.081 0.919 16 C -0.191 4.191 17 N -0.547 5.547 18 Si 0.729 3.271 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.067 3.933 23 C -0.091 4.091 24 C -0.211 4.211 25 C -0.188 4.188 26 C -0.139 4.139 27 C -0.185 4.185 28 C 0.308 3.692 29 O -0.409 6.409 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.229 0.771 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.097 0.903 50 H 0.070 0.930 51 H 0.130 0.870 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.283 0.964 -9.819 19.901 hybrid contribution 0.761 -1.100 -0.192 1.351 sum -16.522 -0.136 -10.012 19.319 Atomic orbital electron populations 1.21572 0.77810 1.03765 1.01713 1.48209 1.06729 1.07399 1.73589 1.21996 0.87817 0.86678 1.04044 1.22265 0.94789 0.95312 1.02383 0.86579 1.19935 0.83508 0.83628 0.82295 1.90715 1.82014 1.31774 1.36931 1.46504 1.05830 1.38613 1.46053 1.20440 0.86441 0.97433 0.91744 0.88584 1.21875 1.00125 1.01755 0.95871 1.20799 0.85357 0.96176 0.95144 1.43609 1.11853 1.34477 1.40937 1.19209 0.88664 0.94251 1.36666 0.91936 1.25137 0.97612 0.96287 1.00073 1.70028 1.08494 1.22685 1.53524 0.86272 0.80297 0.82832 0.77652 1.20303 1.21668 1.21725 1.21082 0.91884 0.94601 0.85737 1.20958 0.96817 0.93915 0.97453 1.22378 0.99217 0.98236 1.01237 1.21789 0.99489 1.01111 0.96442 1.21321 0.94835 1.00595 0.97117 1.22348 0.95393 0.95033 1.05765 1.20794 0.89049 0.84365 0.75021 1.90734 1.78535 1.21057 1.50604 0.89883 0.91848 0.91938 0.88817 0.89728 0.77108 0.92988 0.92110 0.93781 0.93458 0.93740 0.95497 0.90873 0.93234 0.94062 0.90685 0.92859 0.93867 0.92881 0.90268 0.93034 0.87041 0.87002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 11.14 59.85 0.67 1.33 16 2 N -0.62 -5.83 3.33 -180.24 -0.60 -6.43 16 3 C 0.12 0.98 6.69 -3.09 -0.02 0.96 16 4 C -0.13 -1.03 3.54 -90.14 -0.32 -1.35 16 5 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 6 C 0.52 6.08 6.84 -10.99 -0.08 6.01 16 7 O -0.54 -8.22 14.85 5.55 0.08 -8.14 16 8 N -0.72 -8.37 4.90 -56.81 -0.28 -8.65 16 9 C 0.14 2.11 1.77 -70.98 -0.13 1.99 16 10 H 0.10 1.56 4.02 -51.93 -0.21 1.35 16 11 C -0.15 -2.66 5.17 -28.58 -0.15 -2.81 16 12 C 0.15 3.10 5.58 -4.08 -0.02 3.07 16 13 N -0.59 -13.60 2.25 -172.08 -0.39 -13.99 16 14 C -0.26 -6.69 9.41 -15.06 -0.14 -6.83 16 15 H 0.06 1.63 7.85 -52.49 -0.41 1.21 16 16 C 0.01 0.21 4.97 -17.43 -0.09 0.12 16 17 N -0.90 -25.19 11.00 55.49 0.61 -24.58 16 18 Si 0.90 21.14 29.57 -169.99 -5.03 16.11 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.19 4.23 3.53 -2.94 -0.01 4.22 16 23 C -0.09 -1.51 0.75 -155.01 -0.12 -1.63 16 24 C -0.15 -2.45 6.76 37.16 0.25 -2.20 16 25 C -0.13 -1.97 8.15 37.15 0.30 -1.66 16 26 C -0.10 -1.55 4.38 -27.94 -0.12 -1.68 16 27 C -0.14 -1.27 6.40 -26.74 -0.17 -1.44 16 28 C 0.52 5.94 8.03 -10.86 -0.09 5.86 16 29 O -0.53 -8.09 17.35 5.56 0.10 -7.99 16 30 H 0.08 0.67 7.53 -51.93 -0.39 0.28 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.94 7.01 -51.93 -0.36 0.57 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.40 3.62 8.59 -40.82 -0.35 3.27 16 36 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.04 0.86 5.22 -51.93 -0.27 0.59 16 39 H 0.05 0.99 7.99 -51.93 -0.41 0.58 16 40 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 42 H 0.07 1.82 6.31 -51.93 -0.33 1.50 16 43 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 44 H 0.04 0.59 7.90 -51.93 -0.41 0.18 16 45 H 0.07 1.27 3.16 -51.92 -0.16 1.11 16 46 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 47 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 1.42 7.48 -51.93 -0.39 1.03 16 50 H 0.05 0.68 7.63 -51.93 -0.40 0.29 16 51 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.11 1.07 7.89 -51.93 -0.41 0.66 16 LS Contribution 391.40 15.07 5.90 5.90 Total: -1.00 -31.84 391.40 -8.50 -40.34 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -8.67 Total: 3.46 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -0.23 Total: 3.97 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.66 Total: -53.65 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.18 Total: -16.13 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.84 -8.50 -40.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089401511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.945 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds