Wall clock time and date at job start Tue Mar 31 2020 20:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46819 * 124.32947 * 2 1 4 4 C 1.54480 * 105.44448 * 196.99942 * 3 2 1 5 5 H 1.08994 * 110.96631 * 92.76626 * 4 3 2 6 6 C 1.50695 * 110.97249 * 216.49675 * 4 3 2 7 7 O 1.21283 * 120.00036 * 356.90694 * 6 4 3 8 8 N 1.34775 * 120.00095 * 176.63785 * 6 4 3 9 9 C 1.46507 * 119.99843 * 180.27597 * 8 6 4 10 10 H 1.09005 * 108.44558 * 324.99423 * 9 8 6 11 11 C 1.47088 * 108.51372 * 82.68734 * 9 8 6 12 12 C 1.54870 * 110.32418 * 184.05685 * 11 9 8 13 13 N 1.44582 * 109.59328 * 288.73485 * 12 11 9 14 14 C 1.36936 * 118.63909 * 270.74342 * 13 12 11 15 15 H 1.08001 * 120.00389 * 30.43662 * 14 13 12 16 16 C 1.38816 * 120.00014 * 210.43725 * 14 13 12 17 17 N 1.31619 * 120.00016 * 10.90925 * 16 14 13 18 18 Si 1.86800 * 120.00100 * 190.90922 * 16 14 13 19 19 H 1.48505 * 109.47107 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46906 * 119.99980 * 18 16 14 21 21 H 1.48498 * 109.46894 * 240.00009 * 18 16 14 22 22 C 1.47601 * 122.71643 * 90.72770 * 13 12 11 23 23 C 1.53949 * 112.14135 * 317.86323 * 22 13 12 24 24 C 1.53003 * 109.36613 * 79.62781 * 23 22 13 25 25 C 1.52990 * 109.36794 * 199.37005 * 23 22 13 26 26 C 1.51034 * 109.96976 * 319.41911 * 23 22 13 27 27 C 1.54625 * 101.79783 * 334.63362 * 4 3 2 28 28 C 1.34417 * 124.34997 * 180.02562 * 2 1 3 29 29 O 1.21280 * 124.94624 * 359.62095 * 28 2 1 30 30 H 1.09001 * 109.47139 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47561 * 299.97792 * 1 2 3 32 32 H 1.09000 * 109.47677 * 59.98727 * 1 2 3 33 33 H 1.09000 * 110.23545 * 78.02246 * 3 2 1 34 34 H 1.08997 * 110.28687 * 316.00343 * 3 2 1 35 35 H 0.96998 * 120.00253 * 0.27008 * 8 6 4 36 36 H 1.09004 * 109.32872 * 304.31328 * 11 9 8 37 37 H 1.08998 * 109.33047 * 63.79234 * 11 9 8 38 38 H 1.09001 * 109.44498 * 48.76710 * 12 11 9 39 39 H 1.08995 * 109.44797 * 168.72137 * 12 11 9 40 40 H 0.96993 * 120.00493 * 180.02562 * 17 16 14 41 41 H 1.09003 * 108.94693 * 78.54717 * 22 13 12 42 42 H 1.08997 * 108.94926 * 197.26618 * 22 13 12 43 43 H 1.08997 * 109.47225 * 60.13401 * 24 23 22 44 44 H 1.08996 * 109.47008 * 180.13508 * 24 23 22 45 45 H 1.09007 * 109.46954 * 300.13198 * 24 23 22 46 46 H 1.08999 * 109.47178 * 59.99983 * 25 23 22 47 47 H 1.09003 * 109.47629 * 180.02562 * 25 23 22 48 48 H 1.09006 * 109.47420 * 300.00137 * 25 23 22 49 49 H 1.08997 * 109.63339 * 332.06170 * 26 23 22 50 50 H 1.08998 * 109.42781 * 211.94306 * 26 23 22 51 51 H 1.08999 * 110.48915 * 143.45970 * 27 4 3 52 52 H 1.09001 * 110.48510 * 266.10039 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2124 0.0000 4 6 3.7009 0.7491 -0.4353 5 1 3.8273 0.8459 -1.5136 6 6 4.7716 1.5122 0.3011 7 8 4.4646 2.3990 1.0695 8 7 6.0700 1.2057 0.1100 9 6 7.1105 1.9436 0.8305 10 1 6.7883 2.9796 0.9364 11 6 7.2530 1.3593 2.1728 12 6 8.2722 2.1728 3.0083 13 7 9.6069 1.9437 2.5018 14 6 10.3327 0.9009 3.0127 15 1 9.8282 0.0137 3.3661 16 6 11.7169 0.9840 3.0764 17 7 12.3182 2.1329 2.8511 18 14 12.7261 -0.5347 3.4817 19 1 11.8182 -1.6911 3.6910 20 1 13.6516 -0.8283 2.3581 21 1 13.5108 -0.2918 4.7188 22 6 10.2193 2.7872 1.4568 23 6 9.2266 3.1281 0.3307 24 6 8.3144 4.2687 0.7866 25 6 10.0017 3.5650 -0.9139 26 6 8.3885 1.9166 -0.0025 27 6 3.6898 -0.7377 -0.0108 28 6 2.2235 -1.1098 -0.0005 29 8 1.7947 -2.2442 0.0056 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5135 0.8901 32 1 -0.3634 0.5140 -0.8898 33 1 2.3303 1.6435 1.0005 34 1 1.8988 1.9393 -0.7101 35 1 6.3156 0.4966 -0.5046 36 1 6.2856 1.3689 2.6750 37 1 7.5999 0.3299 2.0832 38 1 8.0344 3.2342 2.9375 39 1 8.2207 1.8579 4.0504 40 1 13.2854 2.1910 2.8952 41 1 10.5713 3.7135 1.9109 42 1 11.0704 2.2578 1.0284 43 1 8.9177 5.1470 1.0159 44 1 7.6091 4.5099 -0.0087 45 1 7.7663 3.9617 1.6774 46 1 10.6555 2.7552 -1.2376 47 1 9.3003 3.8073 -1.7124 48 1 10.6014 4.4442 -0.6785 49 1 8.9500 1.0098 0.2223 50 1 8.1325 1.9330 -1.0618 51 1 4.2327 -1.3452 -0.7348 52 1 4.1195 -0.8535 0.9842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089401511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:15 Heat of formation + Delta-G solvation = -56.014803 kcal Electronic energy + Delta-G solvation = -31201.141793 eV Core-core repulsion = 27200.780691 eV Total energy + Delta-G solvation = -4000.361102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.96204 -41.07443 -39.71480 -37.39142 -36.33000 -35.73511 -34.20484 -33.51569 -31.61721 -29.02507 -28.70216 -28.18492 -27.71560 -27.32484 -25.76803 -24.48815 -23.11100 -21.38604 -21.10331 -20.59062 -19.43984 -18.52808 -18.46212 -17.87064 -17.36808 -17.00122 -16.74200 -16.34571 -15.99360 -15.88475 -15.47322 -15.29354 -14.78454 -14.75981 -14.63374 -14.46801 -14.24554 -14.14946 -13.87496 -13.72637 -13.37674 -13.28137 -13.15738 -12.96434 -12.93511 -12.84474 -12.61922 -12.48849 -12.37883 -12.23440 -12.08739 -11.98187 -11.75761 -11.57380 -11.48857 -11.15354 -11.05354 -10.74811 -10.66938 -10.43428 -9.94544 -9.77175 -8.54102 -7.80882 -5.31969 1.44190 1.45412 1.48525 1.57414 1.64788 1.91854 2.29011 2.52928 3.18770 3.32401 3.35763 3.71718 3.75506 3.83893 3.90015 4.09790 4.16995 4.22006 4.27572 4.36037 4.45341 4.48172 4.50793 4.61044 4.66714 4.77395 4.78500 4.79304 4.85546 4.87698 4.88972 4.91230 4.95052 5.04627 5.09056 5.18829 5.24622 5.31036 5.34374 5.45773 5.46888 5.55826 5.60758 5.66737 5.71707 5.79049 5.92820 5.99415 6.47123 6.65996 7.03747 7.24709 7.32429 8.00277 8.39805 9.22747 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015851 B = 0.002923 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.979116 B = 9577.265018 C =10590.005151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.621 5.621 3 C 0.117 3.883 4 C -0.109 4.109 5 H 0.153 0.847 6 C 0.525 3.475 7 O -0.573 6.573 8 N -0.712 5.712 9 C 0.149 3.851 10 H 0.092 0.908 11 C -0.136 4.136 12 C 0.149 3.851 13 N -0.599 5.599 14 C -0.260 4.260 15 H 0.059 0.941 16 C -0.043 4.043 17 N -0.933 5.933 18 Si 0.959 3.041 19 H -0.269 1.269 20 H -0.290 1.290 21 H -0.296 1.296 22 C 0.205 3.795 23 C -0.083 4.083 24 C -0.147 4.147 25 C -0.126 4.126 26 C -0.091 4.091 27 C -0.139 4.139 28 C 0.510 3.490 29 O -0.580 6.580 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.411 0.589 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.030 0.970 40 H 0.247 0.753 41 H -0.011 1.011 42 H 0.039 0.961 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.076 0.924 48 H 0.046 0.954 49 H 0.053 0.947 50 H 0.086 0.914 51 H 0.134 0.866 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.699 0.896 -12.833 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.354 5.354 3 C -0.005 4.005 4 C -0.131 4.131 5 H 0.171 0.829 6 C 0.311 3.689 7 O -0.453 6.453 8 N -0.362 5.362 9 C 0.046 3.954 10 H 0.109 0.891 11 C -0.177 4.177 12 C 0.022 3.978 13 N -0.320 5.320 14 C -0.390 4.390 15 H 0.077 0.923 16 C -0.239 4.239 17 N -0.579 5.579 18 Si 0.788 3.212 19 H -0.194 1.194 20 H -0.217 1.217 21 H -0.223 1.223 22 C 0.080 3.920 23 C -0.085 4.085 24 C -0.203 4.203 25 C -0.184 4.184 26 C -0.129 4.129 27 C -0.180 4.180 28 C 0.299 3.701 29 O -0.460 6.460 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.248 0.752 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.007 0.993 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.094 0.906 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.104 0.896 51 H 0.152 0.848 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.078 1.021 -12.277 22.710 hybrid contribution 1.236 -1.054 0.653 1.751 sum -17.842 -0.033 -11.624 21.294 Atomic orbital electron populations 1.21750 0.76745 1.03447 1.03511 1.48378 1.07639 1.07232 1.72190 1.22065 0.87988 0.86547 1.03930 1.22223 0.93146 0.93858 1.03840 0.82904 1.20429 0.83750 0.83101 0.81629 1.90715 1.82516 1.33557 1.38485 1.46259 1.05290 1.38740 1.45914 1.20076 0.87266 0.97349 0.90757 0.89079 1.21611 0.98716 1.00409 0.96955 1.20910 0.84848 0.97204 0.94856 1.43769 1.12601 1.33998 1.41657 1.19443 0.89079 0.94796 1.35731 0.92295 1.25789 0.98633 0.98609 1.00875 1.70191 1.08193 1.24361 1.55129 0.85330 0.78775 0.80205 0.76874 1.19358 1.21662 1.22335 1.20828 0.92517 0.91973 0.86655 1.20829 0.96191 0.95282 0.96222 1.22277 0.99136 0.97374 1.01525 1.21758 0.99837 1.00604 0.96210 1.21203 0.94216 0.98367 0.99148 1.22341 0.93845 0.95773 1.06008 1.21226 0.90286 0.84087 0.74475 1.90708 1.79462 1.22854 1.52995 0.91267 0.90726 0.89461 0.90553 0.87076 0.75225 0.92828 0.93298 0.93073 0.95171 0.94325 0.99253 0.94270 0.93738 0.91400 0.91957 0.93467 0.90551 0.93482 0.92823 0.89573 0.84832 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 11.14 127.77 1.42 2.50 16 2 N -0.62 -10.23 3.33 -842.76 -2.81 -13.04 16 3 C 0.12 1.60 6.69 86.82 0.58 2.18 16 4 C -0.11 -1.37 3.54 -10.49 -0.04 -1.40 16 5 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 6 C 0.52 10.55 6.84 87.66 0.60 11.15 16 7 O -0.57 -16.23 14.85 -3.04 -0.05 -16.27 16 8 N -0.71 -14.18 4.90 -452.04 -2.21 -16.40 16 9 C 0.15 4.13 1.77 43.01 0.08 4.21 16 10 H 0.09 2.73 4.02 -2.38 -0.01 2.72 16 11 C -0.14 -4.57 5.17 29.39 0.15 -4.42 16 12 C 0.15 6.11 5.58 87.38 0.49 6.60 16 13 N -0.60 -28.46 2.25 -698.35 -1.57 -30.03 16 14 C -0.26 -13.82 9.41 84.03 0.79 -13.03 16 15 H 0.06 3.12 7.85 -2.91 -0.02 3.10 16 16 C -0.04 -2.37 4.97 84.86 0.42 -1.95 16 17 N -0.93 -53.97 11.00 21.65 0.24 -53.73 16 18 Si 0.96 44.36 29.57 68.60 2.03 46.39 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 21 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 22 C 0.21 9.33 3.53 86.49 0.31 9.64 16 23 C -0.08 -2.73 0.75 -52.50 -0.04 -2.77 16 24 C -0.15 -4.42 6.76 71.98 0.49 -3.93 16 25 C -0.13 -3.56 8.15 71.98 0.59 -2.97 16 26 C -0.09 -2.61 4.38 29.81 0.13 -2.48 16 27 C -0.14 -2.08 6.40 30.59 0.20 -1.88 16 28 C 0.51 10.88 8.03 87.90 0.71 11.59 16 29 O -0.58 -17.41 17.35 -3.03 -0.05 -17.46 16 30 H 0.07 1.07 7.53 -2.39 -0.02 1.06 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 1.37 7.01 -2.39 -0.02 1.35 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.41 5.85 8.59 -92.71 -0.80 5.05 16 36 H 0.05 1.79 7.67 -2.38 -0.02 1.77 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 2.03 5.22 -2.39 -0.01 2.01 16 39 H 0.03 1.30 7.99 -2.39 -0.02 1.29 16 40 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 41 H -0.01 -0.55 7.83 -2.39 -0.02 -0.57 16 42 H 0.04 2.03 6.31 -2.39 -0.02 2.01 16 43 H 0.04 1.37 8.13 -2.39 -0.02 1.35 16 44 H 0.07 1.70 7.90 -2.39 -0.02 1.69 16 45 H 0.06 2.04 3.16 -2.38 -0.01 2.04 16 46 H 0.05 1.38 8.12 -2.39 -0.02 1.36 16 47 H 0.08 1.67 8.08 -2.39 -0.02 1.65 16 48 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 49 H 0.05 1.85 7.48 -2.39 -0.02 1.83 16 50 H 0.09 1.91 7.63 -2.39 -0.02 1.89 16 51 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.10 1.77 7.89 -2.39 -0.02 1.75 16 Total: -1.00 -72.82 391.40 2.56 -70.25 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.13 Total: 17.26 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 6.87 Total: 13.02 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -6.36 Total: -113.20 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.10 Total: -33.73 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -72.82 2.56 -70.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089401511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.239 kcal (2) G-P(sol) polarization free energy of solvation -72.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds