Wall clock time and date at job start Tue Mar 31 2020 20:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46759 * 124.35002 * 2 1 4 4 C 1.54484 * 105.47260 * 162.98415 * 3 2 1 5 5 C 1.54628 * 101.76245 * 25.41982 * 4 3 2 6 6 H 1.09002 * 110.48867 * 94.01471 * 5 4 3 7 7 C 1.50701 * 110.48553 * 216.52330 * 5 4 3 8 8 O 1.21273 * 120.00084 * 0.02562 * 7 5 4 9 9 N 1.34784 * 119.99720 * 180.02562 * 7 5 4 10 10 C 1.46507 * 119.99768 * 179.97438 * 9 7 5 11 11 H 1.08998 * 110.21085 * 36.93146 * 10 9 7 12 12 C 1.52527 * 110.24768 * 274.99803 * 10 9 7 13 13 C 1.46238 * 114.27438 * 151.47476 * 12 10 9 14 14 N 1.50164 * 107.53002 * 58.41187 * 13 12 10 15 15 C 1.36940 * 120.53765 * 109.56644 * 14 13 12 16 16 H 1.08005 * 120.00120 * 172.86579 * 15 14 13 17 17 C 1.38814 * 119.99882 * 352.86135 * 15 14 13 18 18 N 1.31614 * 120.00122 * 319.30420 * 17 15 14 19 19 Si 1.86805 * 119.99873 * 139.30214 * 17 15 14 20 20 H 1.48491 * 109.47026 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.46913 * 300.00059 * 19 17 15 22 22 H 1.48500 * 109.47013 * 59.99803 * 19 17 15 23 23 C 1.43430 * 118.92544 * 289.83407 * 14 13 12 24 24 C 1.54411 * 116.38786 * 91.46004 * 23 14 13 25 25 C 1.52998 * 109.44123 * 198.43690 * 24 23 14 26 26 C 1.52999 * 109.23555 * 78.73410 * 24 23 14 27 27 C 1.50121 * 110.36873 * 158.94814 * 10 9 7 28 28 C 1.34421 * 124.34472 * 180.02562 * 2 1 3 29 29 O 1.21280 * 124.94510 * 0.43962 * 28 2 1 30 30 H 1.08999 * 109.47630 * 89.99217 * 1 2 3 31 31 H 1.09002 * 109.47457 * 209.99702 * 1 2 3 32 32 H 1.09002 * 109.47138 * 329.99873 * 1 2 3 33 33 H 1.09001 * 110.24405 * 43.98830 * 3 2 1 34 34 H 1.08995 * 110.24655 * 281.98587 * 3 2 1 35 35 H 1.08999 * 110.97303 * 267.30449 * 4 3 2 36 36 H 1.08998 * 111.00220 * 143.54736 * 4 3 2 37 37 H 0.96996 * 120.00077 * 359.97438 * 9 7 5 38 38 H 1.09004 * 108.51900 * 30.23720 * 12 10 9 39 39 H 1.08995 * 108.52079 * 272.72134 * 12 10 9 40 40 H 1.08996 * 109.85131 * 298.89823 * 13 12 10 41 41 H 1.09009 * 109.89776 * 177.94655 * 13 12 10 42 42 H 0.97001 * 119.99854 * 353.66796 * 18 17 15 43 43 H 1.09001 * 108.15893 * 213.03183 * 23 14 13 44 44 H 1.09000 * 108.16547 * 329.60142 * 23 14 13 45 45 H 1.09001 * 109.47108 * 180.64567 * 25 24 23 46 46 H 1.08998 * 109.47598 * 300.64755 * 25 24 23 47 47 H 1.09005 * 109.47215 * 60.64859 * 25 24 23 48 48 H 1.08994 * 109.47344 * 299.47518 * 26 24 23 49 49 H 1.09000 * 109.47201 * 59.48547 * 26 24 23 50 50 H 1.09004 * 109.46625 * 179.47631 * 26 24 23 51 51 H 1.08995 * 109.20809 * 337.05843 * 27 10 9 52 52 H 1.09000 * 109.20983 * 96.42069 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7486 0.4357 5 6 3.6897 -0.7379 0.0100 6 1 4.1215 -0.8533 -0.9842 7 6 4.4402 -1.5787 1.0104 8 8 4.9454 -1.0582 1.9823 9 7 4.5500 -2.9092 0.8249 10 6 5.2800 -3.7266 1.7972 11 1 5.1066 -3.3551 2.8071 12 6 6.7720 -3.7173 1.4801 13 6 7.6355 -3.9020 2.6458 14 7 7.2689 -5.2143 3.2769 15 6 8.1241 -6.2817 3.2097 16 1 7.9063 -7.1838 3.7622 17 6 9.2709 -6.2043 2.4314 18 7 9.2262 -5.6276 1.2491 19 14 10.8777 -6.9184 3.0620 20 1 11.9436 -6.7090 2.0496 21 1 11.2570 -6.2416 4.3282 22 1 10.7095 -8.3730 3.3095 23 6 6.0059 -5.3334 3.9462 24 6 4.8198 -5.8287 3.0905 25 6 3.5052 -5.4700 3.7862 26 6 4.9119 -7.3477 2.9323 27 6 4.8589 -5.1637 1.6927 28 6 2.2233 -1.1099 -0.0005 29 8 1.7945 -2.2443 -0.0086 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.8984 1.9382 0.7103 34 1 2.3306 1.6429 -1.0003 35 1 3.8269 0.8445 1.5141 36 1 4.4758 1.3007 -0.0962 37 1 4.1456 -3.3255 0.0477 38 1 7.0206 -2.7645 1.0125 39 1 6.9791 -4.5141 0.7659 40 1 7.4754 -3.0917 3.3571 41 1 8.6800 -3.9200 2.3346 42 1 8.3759 -5.3391 0.8821 43 1 6.1276 -6.0236 4.7810 44 1 5.7444 -4.3573 4.3548 45 1 2.6678 -5.8295 3.1882 46 1 3.4757 -5.9372 4.7706 47 1 3.4354 -4.3877 3.8955 48 1 5.8456 -7.6049 2.4324 49 1 4.8845 -7.8177 3.9154 50 1 4.0709 -7.7025 2.3364 51 1 3.8672 -5.2149 1.2433 52 1 5.5670 -5.6999 1.0609 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089461639.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:41 Heat of formation + Delta-G solvation = -37.978284 kcal Electronic energy + Delta-G solvation = -31784.107453 eV Core-core repulsion = 27784.528473 eV Total energy + Delta-G solvation = -3999.578980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.12806 -39.56967 -38.19451 -36.70215 -34.75999 -34.63035 -33.14964 -31.48214 -30.64634 -28.44543 -27.47485 -27.05582 -26.72018 -25.17598 -23.70467 -22.76495 -21.43714 -20.73654 -20.20088 -19.69827 -18.17203 -17.46994 -17.07689 -17.02046 -16.41894 -15.85854 -15.44523 -14.96188 -14.56066 -14.23473 -14.03090 -13.94853 -13.74448 -13.67902 -13.53659 -13.37192 -13.06808 -12.83634 -12.67963 -12.49519 -12.37887 -12.11116 -12.01082 -11.73997 -11.66137 -11.38288 -11.15941 -11.00645 -10.81701 -10.58479 -10.25928 -10.19867 -10.10170 -10.04614 -9.92817 -9.82043 -9.66449 -9.57477 -9.40929 -9.09732 -8.67664 -8.10199 -6.91470 -6.09905 -2.94493 2.14796 2.52174 2.86160 3.36504 3.56148 3.63197 3.79210 3.95880 4.11637 4.57871 4.61981 4.67532 4.86811 4.91529 4.96346 5.14176 5.16175 5.20207 5.23208 5.35380 5.40366 5.43728 5.52748 5.53832 5.76238 5.80710 5.87471 5.97089 6.10237 6.11399 6.19258 6.24022 6.31816 6.39567 6.42657 6.48233 6.58959 6.67396 6.71475 6.75429 6.82123 6.89352 6.96895 7.07451 7.13032 7.28736 7.30112 7.73645 7.81495 8.06616 8.38309 8.59782 9.15673 9.92854 10.38444 11.20499 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018191 B = 0.003246 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.822964 B = 8625.155105 C = 9550.333665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.623 5.623 3 C 0.102 3.898 4 C -0.117 4.117 5 C -0.151 4.151 6 H 0.133 0.867 7 C 0.529 3.471 8 O -0.534 6.534 9 N -0.706 5.706 10 C 0.151 3.849 11 H 0.089 0.911 12 C -0.138 4.138 13 C 0.135 3.865 14 N -0.589 5.589 15 C -0.352 4.352 16 H 0.066 0.934 17 C -0.018 4.018 18 N -0.903 5.903 19 Si 1.036 2.964 20 H -0.289 1.289 21 H -0.296 1.296 22 H -0.296 1.296 23 C 0.170 3.830 24 C -0.092 4.092 25 C -0.134 4.134 26 C -0.128 4.128 27 C -0.104 4.104 28 C 0.528 3.472 29 O -0.516 6.516 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.400 0.600 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.027 0.973 41 H 0.096 0.904 42 H 0.272 0.728 43 H 0.036 0.964 44 H 0.029 0.971 45 H 0.045 0.955 46 H 0.049 0.951 47 H 0.047 0.953 48 H 0.069 0.931 49 H 0.044 0.956 50 H 0.035 0.965 51 H 0.050 0.950 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 13.257 -4.574 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.358 5.358 3 C -0.021 4.021 4 C -0.155 4.155 5 C -0.176 4.176 6 H 0.151 0.849 7 C 0.313 3.687 8 O -0.411 6.411 9 N -0.355 5.355 10 C 0.048 3.952 11 H 0.107 0.893 12 C -0.178 4.178 13 C 0.010 3.990 14 N -0.310 5.310 15 C -0.480 4.480 16 H 0.084 0.916 17 C -0.220 4.220 18 N -0.545 5.545 19 Si 0.867 3.133 20 H -0.215 1.215 21 H -0.224 1.224 22 H -0.223 1.223 23 C 0.040 3.960 24 C -0.096 4.096 25 C -0.192 4.192 26 C -0.186 4.186 27 C -0.142 4.142 28 C 0.314 3.686 29 O -0.391 6.391 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.235 0.765 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.045 0.955 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.063 0.937 50 H 0.054 0.946 51 H 0.068 0.932 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.683 12.813 -4.194 19.934 hybrid contribution -2.018 -0.098 -0.319 2.045 sum -16.700 12.715 -4.513 21.470 Atomic orbital electron populations 1.21565 0.77636 1.03343 1.01956 1.48090 1.06647 1.07307 1.73747 1.22203 0.90622 0.87256 1.02053 1.22609 0.96107 0.91906 1.04875 1.22203 0.94800 0.97984 1.02592 0.84896 1.19608 0.80309 0.82799 0.86029 1.90706 1.48210 1.72105 1.30072 1.46200 1.54732 1.06924 1.27667 1.20399 0.91992 0.90434 0.92423 0.89338 1.21431 0.93734 1.01057 1.01563 1.20512 1.00106 0.86221 0.92122 1.44411 1.14046 1.08073 1.64441 1.19920 1.03617 0.96307 1.28163 0.91572 1.25392 1.01532 1.01335 0.93728 1.70859 1.30344 1.40915 1.12357 0.83940 0.77913 0.75504 0.75979 1.21458 1.22352 1.22275 1.20323 0.84813 0.97494 0.93362 1.21905 0.96573 0.95669 0.95432 1.21818 0.96840 1.00621 0.99885 1.21746 1.01505 0.94711 1.00605 1.21773 1.00321 0.93897 0.98164 1.20349 0.88000 0.84654 0.75607 1.90764 1.78075 1.20710 1.49525 0.92446 0.90560 0.90878 0.89907 0.90731 0.87901 0.88453 0.76487 0.93920 0.90920 0.95506 0.88572 0.91442 0.94550 0.95314 0.93551 0.93183 0.93414 0.91245 0.93691 0.94631 0.93160 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 10.96 59.85 0.66 1.33 16 2 N -0.62 -5.70 3.33 -180.29 -0.60 -6.30 16 3 C 0.10 0.64 7.35 -3.12 -0.02 0.62 16 4 C -0.12 -0.98 6.48 -25.10 -0.16 -1.15 16 5 C -0.15 -1.68 3.32 -91.78 -0.31 -1.98 16 6 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 7 C 0.53 8.23 6.97 -10.98 -0.08 8.16 16 8 O -0.53 -9.99 15.21 5.56 0.08 -9.91 16 9 N -0.71 -11.33 4.75 -55.44 -0.26 -11.59 16 10 C 0.15 2.81 2.10 -69.60 -0.15 2.66 16 11 H 0.09 1.83 5.27 -51.93 -0.27 1.55 16 12 C -0.14 -2.90 4.67 -30.19 -0.14 -3.04 16 13 C 0.13 3.20 5.22 -5.21 -0.03 3.17 16 14 N -0.59 -14.34 2.62 -175.40 -0.46 -14.80 16 15 C -0.35 -9.50 8.78 -15.06 -0.13 -9.64 16 16 H 0.07 1.82 8.05 -52.48 -0.42 1.40 16 17 C -0.02 -0.49 4.53 -17.43 -0.08 -0.57 16 18 N -0.90 -25.91 11.99 55.49 0.67 -25.24 16 19 Si 1.04 25.02 30.06 -169.99 -5.11 19.91 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.17 3.60 3.96 -4.93 -0.02 3.58 16 24 C -0.09 -1.69 0.76 -152.80 -0.12 -1.81 16 25 C -0.13 -2.16 8.20 37.16 0.30 -1.85 16 26 C -0.13 -2.36 8.27 37.16 0.31 -2.05 16 27 C -0.10 -1.91 4.15 -27.19 -0.11 -2.02 16 28 C 0.53 6.49 7.44 -10.86 -0.08 6.41 16 29 O -0.52 -8.04 16.74 5.56 0.09 -7.94 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.64 7.93 -51.93 -0.41 0.23 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 1.08 7.00 -51.93 -0.36 0.71 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 5.86 7.98 -40.82 -0.33 5.53 16 38 H 0.04 0.89 7.90 -51.93 -0.41 0.48 16 39 H 0.07 1.68 4.65 -51.93 -0.24 1.43 16 40 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 41 H 0.10 2.56 5.61 -51.92 -0.29 2.26 16 42 H 0.27 7.65 4.95 -40.82 -0.20 7.45 16 43 H 0.04 0.79 7.80 -51.93 -0.41 0.38 16 44 H 0.03 0.60 6.68 -51.93 -0.35 0.25 16 45 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.78 7.57 -51.93 -0.39 0.39 16 48 H 0.07 1.48 7.45 -51.93 -0.39 1.09 16 49 H 0.04 0.78 8.11 -51.93 -0.42 0.36 16 50 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.05 0.86 7.64 -51.93 -0.40 0.46 16 52 H 0.07 1.52 6.65 -51.93 -0.35 1.17 16 LS Contribution 391.81 15.07 5.90 5.90 Total: -1.00 -32.75 391.81 -8.50 -41.25 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -8.66 Total: 6.91 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -0.15 Total: 1.83 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.66 Total: -57.94 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.18 Total: -17.85 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.11 Total: 19.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.75 -8.50 -41.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089461639.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.269 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds